RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, human

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCN1A-222	ENST00000642141	KIAA0355	O15063	1070 aa		12.03	□□□□□ -0.48
SCN1A-222	ENST00000642141	CST5	P28325	142 aa	Predicted RBP	12.03	□□□□□ -0.48
SCN1A-222	ENST00000642141	PDE4D	Q08499	809 aa		12.03	□□□□□ -0.48
SCN1A-222	ENST00000642141	CDC37	Q16543	378 aa	Predicted RBP	12.03	□□□□□ -0.48
SCN1A-222	ENST00000642141	CCDC178	Q5BJE1	867 aa		12.03	□□□□□ -0.48
SCN1A-222	ENST00000642141	ANKRD33	Q7Z3H0	272 aa		12.03	□□□□□ -0.48
SCN1A-222	ENST00000642141	RUFY2	Q8WXA3	655 aa		12.03	□□□□□ -0.48
SCN1A-222	ENST00000642141	ANKS1A	Q92625	1134 aa		12.03	□□□□□ -0.48
SCN1A-222	ENST00000642141	WDR11	Q9BZH6	1224 aa		12.03	□□□□□ -0.48
SCN1A-222	ENST00000642141	SENP2	Q9HC62	589 aa		12.03	□□□□□ -0.48
SCN1A-222	ENST00000642141	ADD3	Q9UEY8	706 aa	Known RBP	12.03	□□□□□ -0.48
SCN1A-222	ENST00000642141	ARVCF	O00192	962 aa		12.02	□□□□□ -0.49
SCN1A-222	ENST00000642141	CYP21A2	P08686	494 aa		12.02	□□□□□ -0.49
SCN1A-222	ENST00000642141	CDK7	P50613	346 aa		12.02	□□□□□ -0.49
SCN1A-222	ENST00000642141	CHMP4BP1	P59074	171 aa		12.02	□□□□□ -0.49
SCN1A-222	ENST00000642141	TRDN	Q13061	729 aa		12.02	□□□□□ -0.49
SCN1A-222	ENST00000642141	QRICH1	Q2TAL8	776 aa		12.02	□□□□□ -0.49
SCN1A-222	ENST00000642141	ASPRV1	Q53RT3	343 aa		12.02	□□□□□ -0.49
SCN1A-222	ENST00000642141	PIBF1	Q8WXW3	757 aa		12.02	□□□□□ -0.49
SCN1A-222	ENST00000642141	COPS5	Q92905	334 aa		12.02	□□□□□ -0.49
SCN1A-222	ENST00000642141	PPP1R12C	Q9BZL4	782 aa		12.02	□□□□□ -0.49
SCN1A-222	ENST00000642141	TRPV6	Q9H1D0	765 aa		12.02	□□□□□ -0.49
SCN1A-222	ENST00000642141	JMJD4	Q9H9V9	463 aa		12.02	□□□□□ -0.49
SCN1A-222	ENST00000642141	VTA1	Q9NP79	307 aa		12.02	□□□□□ -0.49
SCN1A-222	ENST00000642141		U3KPZ7	1027 aa	Predicted RBP	12.02	□□□□□ -0.49
SCN1A-222	ENST00000642141	ELP1	O95163	1332 aa		12.02	□□□□□ -0.49
SCN1A-222	ENST00000642141		A0A0U1RQG5	324 aa	Predicted RBP	12.01	□□□□□ -0.49
SCN1A-222	ENST00000642141	KLRF2	D3W0D1	207 aa		12.01	□□□□□ -0.49
SCN1A-222	ENST00000642141		E7EWF7	191 aa		12.01	□□□□□ -0.49
SCN1A-222	ENST00000642141	IFIT3	O14879	490 aa	Known RBP	12.01	□□□□□ -0.49
SCN1A-222	ENST00000642141	TIMP1	P01033	207 aa		12.01	□□□□□ -0.49
SCN1A-222	ENST00000642141	MYL3	P08590	195 aa		12.01	□□□□□ -0.49
SCN1A-222	ENST00000642141	CYP2C18	P33260	490 aa		12.01	□□□□□ -0.49
SCN1A-222	ENST00000642141	FPGS	Q05932	587 aa		12.01	□□□□□ -0.49
SCN1A-222	ENST00000642141	SEC23A	Q15436	765 aa		12.01	□□□□□ -0.49
SCN1A-222	ENST00000642141	FBXO11	Q86XK2	927 aa		12.01	□□□□□ -0.49
SCN1A-222	ENST00000642141	OR6J1	Q8NGC5	347 aa		12.01	□□□□□ -0.49
SCN1A-222	ENST00000642141	MORC4	Q8TE76	937 aa		12.01	□□□□□ -0.49
SCN1A-222	ENST00000642141	RNPC3	Q96LT9	517 aa	Known RBP	12.01	□□□□□ -0.49
SCN1A-222	ENST00000642141	TOX2	Q96NM4	488 aa		12.01	□□□□□ -0.49
SCN1A-222	ENST00000642141	TAAR1	Q96RJ0	339 aa		12.01	□□□□□ -0.49
SCN1A-222	ENST00000642141	MTMR10	Q9NXD2	777 aa		12.01	□□□□□ -0.49
SCN1A-222	ENST00000642141	COL20A1	Q9P218	1284 aa		12.01	□□□□□ -0.49
SCN1A-222	ENST00000642141	GRIN2D	O15399	1336 aa		12.01	□□□□□ -0.49
SCN1A-222	ENST00000642141	WDR19	Q8NEZ3	1342 aa		12.01	□□□□□ -0.49
SCN1A-222	ENST00000642141	LTBP2	Q14767	1821 aa		12	□□□□□ -0.49
SCN1A-222	ENST00000642141	LAMA4	Q16363	1823 aa		12	□□□□□ -0.49
SCN1A-222	ENST00000642141	SGSM2	O43147	1006 aa		12	□□□□□ -0.49
SCN1A-222	ENST00000642141	ACR	P10323	421 aa		12	□□□□□ -0.49
SCN1A-222	ENST00000642141	ITGA7	Q13683	1181 aa		12	□□□□□ -0.49
SCN1A-222	ENST00000642141	DUSP28	Q4G0W2	176 aa		12	□□□□□ -0.49
SCN1A-222	ENST00000642141	SEPT14	Q6ZU15	432 aa		12	□□□□□ -0.49
SCN1A-222	ENST00000642141	STOX1	Q6ZVD7	989 aa		12	□□□□□ -0.49
SCN1A-222	ENST00000642141	RALYL	Q86SE5	291 aa	Known RBP	12	□□□□□ -0.49
SCN1A-222	ENST00000642141	HOMER1	Q86YM7	354 aa		12	□□□□□ -0.49
SCN1A-222	ENST00000642141	FAM126B	Q8IXS8	530 aa		12	□□□□□ -0.49
SCN1A-222	ENST00000642141	GPHN	Q9NQX3	736 aa	Predicted RBP	12	□□□□□ -0.49
SCN1A-222	ENST00000642141	MAD2L2	Q9UI95	211 aa		12	□□□□□ -0.49
SCN1A-222	ENST00000642141	TBX21	Q9UL17	535 aa		12	□□□□□ -0.49
SCN1A-222	ENST00000642141	LCT	P09848	1927 aa		11.99	□□□□□ -0.49
SCN1A-222	ENST00000642141	TLR3	O15455	904 aa	Known RBP	11.99	□□□□□ -0.49
SCN1A-222	ENST00000642141	ZEB2	O60315	1214 aa		11.99	□□□□□ -0.49
SCN1A-222	ENST00000642141	PPP1R11	O60927	126 aa	Predicted RBP	11.99	□□□□□ -0.49
SCN1A-222	ENST00000642141	CFB	P00751	764 aa		11.99	□□□□□ -0.49
SCN1A-222	ENST00000642141	TXN	P10599	105 aa	Known RBP	11.99	□□□□□ -0.49
SCN1A-222	ENST00000642141	CSF2RA	P15509	400 aa		11.99	□□□□□ -0.49
SCN1A-222	ENST00000642141	NKX3-2	P78367	333 aa		11.99	□□□□□ -0.49
SCN1A-222	ENST00000642141	SLC35G1	Q2M3R5	365 aa		11.99	□□□□□ -0.49
SCN1A-222	ENST00000642141	TMEM67	Q5HYA8	995 aa		11.99	□□□□□ -0.49
SCN1A-222	ENST00000642141	GPR153	Q6NV75	609 aa		11.99	□□□□□ -0.49
SCN1A-222	ENST00000642141	SYTL5	Q8TDW5	730 aa	Predicted RBP	11.99	□□□□□ -0.49
SCN1A-222	ENST00000642141	ZFP91	Q96JP5	570 aa	Predicted RBP	11.99	□□□□□ -0.49
SCN1A-222	ENST00000642141	PNMA2	Q9UL42	364 aa		11.99	□□□□□ -0.49
SCN1A-222	ENST00000642141	RBM8A	Q9Y5S9	174 aa	Known RBP	11.99	□□□□□ -0.49
SCN1A-222	ENST00000642141	ABCB11	O95342	1321 aa		11.99	□□□□□ -0.49
SCN1A-222	ENST00000642141	UMODL1	Q5DID0	1318 aa		11.99	□□□□□ -0.49
SCN1A-222	ENST00000642141	MROH7	Q68CQ1	1323 aa		11.99	□□□□□ -0.49
SCN1A-222	ENST00000642141	RAD50	Q92878	1312 aa		11.99	□□□□□ -0.49
SCN1A-222	ENST00000642141	RBM47	A0AV96	593 aa	Known RBP	11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	ERICH2	A1L162	156 aa		11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	SORBS3	O60504	671 aa		11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	B4GALT4	O60513	344 aa		11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	ARIH2	O95376	493 aa		11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	CD4	P01730	458 aa		11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	EIF2AK2	P19525	551 aa	Known RBP	11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	HOXA13	P31271	388 aa	Predicted RBP	11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	CCL23	P55773	120 aa		11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	COL9A3	Q14050	684 aa	Predicted RBP	11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	WTAP	Q15007	396 aa		11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	PPP2R5B	Q15173	497 aa		11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	LY6K	Q17RY6	165 aa		11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	MFSD5	Q6N075	450 aa		11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	C16orf59	Q7L2K0	433 aa		11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	SLC17A8	Q8NDX2	589 aa		11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	RGS22	Q8NE09	1264 aa		11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	DNER	Q8NFT8	737 aa		11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	NCOA7	Q8NI08	942 aa		11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	MAP4K1	Q92918	833 aa		11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	PIGS	Q96S52	555 aa		11.98	□□□□□ -0.49
SCN1A-222	ENST00000642141	RMDN3	Q96TC7	470 aa		11.98	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms