RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 IFNKQ9P0W0 207 aa20.76■□□□□ 0.91
CLN3-263ENST00000637871 A0A087WWV3 80 aa20.75■□□□□ 0.91
CLN3-263ENST00000637871 GTPBP6O43824 516 aaPredicted RBP20.75■□□□□ 0.91
CLN3-263ENST00000637871 GH2P01242 217 aa20.75■□□□□ 0.91
CLN3-263ENST00000637871 CAP2P40123 477 aa20.75■□□□□ 0.91
CLN3-263ENST00000637871 DPYDQ12882 1025 aa20.75■□□□□ 0.91
CLN3-263ENST00000637871 TYW1BQ6NUM6 668 aa20.75■□□□□ 0.91
CLN3-263ENST00000637871 USP49Q70CQ1 688 aa20.75■□□□□ 0.91
CLN3-263ENST00000637871 MKL1Q969V6 931 aa20.75■□□□□ 0.91
CLN3-263ENST00000637871 XPO4Q9C0E2 1151 aaKnown RBP20.75■□□□□ 0.91
CLN3-263ENST00000637871 NYAP2Q9P242 653 aa20.75■□□□□ 0.91
CLN3-263ENST00000637871 NRBP1Q9UHY1 535 aa20.75■□□□□ 0.91
CLN3-263ENST00000637871 USP17L5A8MUK1 530 aa20.75■□□□□ 0.91
CLN3-263ENST00000637871 GOLGA8HP0CJ92 632 aa20.75■□□□□ 0.91
CLN3-263ENST00000637871 KCNJ6P48051 423 aa20.75■□□□□ 0.91
CLN3-263ENST00000637871 UBASH3AP57075 661 aa20.75■□□□□ 0.91
CLN3-263ENST00000637871 ZNF543Q08ER8 600 aa20.75■□□□□ 0.91
CLN3-263ENST00000637871 MKRN3Q13064 507 aaKnown RBP20.75■□□□□ 0.91
CLN3-263ENST00000637871 E2F4Q16254 413 aa20.75■□□□□ 0.91
CLN3-263ENST00000637871 ANKRD13AQ8IZ07 590 aa20.75■□□□□ 0.91
CLN3-263ENST00000637871 CACTINQ8WUQ7 758 aaKnown RBP20.75■□□□□ 0.91
CLN3-263ENST00000637871 CREBZFQ9NS37 354 aa20.75■□□□□ 0.91
CLN3-263ENST00000637871 ZBTB21Q9ULJ3 1066 aa20.75■□□□□ 0.91
CLN3-263ENST00000637871 PYCARDQ9ULZ3 195 aa20.75■□□□□ 0.91
CLN3-263ENST00000637871 SYNPO2Q9UMS6 1093 aa20.75■□□□□ 0.91
CLN3-263ENST00000637871 CSADQ9Y600 493 aa20.75■□□□□ 0.91
CLN3-263ENST00000637871 PNMA6FA0A0J9YX94 578 aa20.74■□□□□ 0.91
CLN3-263ENST00000637871 FOXN1O15353 648 aa20.74■□□□□ 0.91
CLN3-263ENST00000637871 SERPINC1P01008 464 aa20.74■□□□□ 0.91
CLN3-263ENST00000637871 GRM1Q13255 1194 aa20.74■□□□□ 0.91
CLN3-263ENST00000637871 ABCB5Q2M3G0 1257 aa20.74■□□□□ 0.91
CLN3-263ENST00000637871 NEK8Q86SG6 692 aa20.74■□□□□ 0.91
CLN3-263ENST00000637871 SCYL3Q8IZE3 742 aa20.74■□□□□ 0.91
CLN3-263ENST00000637871 NAP1L4Q99733 375 aaKnown RBP20.74■□□□□ 0.91
CLN3-263ENST00000637871 KANSL2Q9H9L4 492 aa20.74■□□□□ 0.91
CLN3-263ENST00000637871 PHIPQ8WWQ0 1821 aa20.74■□□□□ 0.91
CLN3-263ENST00000637871 GREB1LQ9C091 1923 aaPredicted RBP20.74■□□□□ 0.91
CLN3-263ENST00000637871 WNT7AO00755 349 aa20.73■□□□□ 0.91
CLN3-263ENST00000637871 CTNND1O60716 968 aaKnown RBP20.73■□□□□ 0.91
CLN3-263ENST00000637871 BMP6P22004 513 aa20.73■□□□□ 0.91
CLN3-263ENST00000637871 HOXA7P31268 230 aaPredicted RBP20.73■□□□□ 0.91
CLN3-263ENST00000637871 CCDC144BQ3MJ40 725 aa20.73■□□□□ 0.91
CLN3-263ENST00000637871 NOM1Q5C9Z4 860 aaKnown RBP20.73■□□□□ 0.91
CLN3-263ENST00000637871 MCTP2Q6DN12 878 aa20.73■□□□□ 0.91
CLN3-263ENST00000637871 ISM2Q6H9L7 571 aa20.73■□□□□ 0.91
CLN3-263ENST00000637871 PAXIP1Q6ZW49 1069 aaPredicted RBP20.73■□□□□ 0.91
CLN3-263ENST00000637871 DCAF4Q8WV16 495 aa20.73■□□□□ 0.91
CLN3-263ENST00000637871 PIGSQ96S52 555 aa20.73■□□□□ 0.91
CLN3-263ENST00000637871 PRR29P0C7W0 189 aa20.72■□□□□ 0.91
CLN3-263ENST00000637871 GJA5P36382 358 aa20.72■□□□□ 0.91
CLN3-263ENST00000637871 SEPT2Q15019 361 aa20.72■□□□□ 0.91
CLN3-263ENST00000637871 INF2Q27J81 1249 aa20.72■□□□□ 0.91
CLN3-263ENST00000637871 NOL9Q5SY16 702 aaKnown RBP20.72■□□□□ 0.91
CLN3-263ENST00000637871 TEX2Q8IWB9 1127 aa20.72■□□□□ 0.91
CLN3-263ENST00000637871 REXO1Q8N1G1 1221 aaKnown RBP20.72■□□□□ 0.91
CLN3-263ENST00000637871 OTUD5Q96G74 571 aa20.72■□□□□ 0.91
CLN3-263ENST00000637871 HSD3B7Q9H2F3 369 aa20.72■□□□□ 0.91
CLN3-263ENST00000637871 MTMR7Q9Y216 660 aa20.72■□□□□ 0.91
CLN3-263ENST00000637871 R3HCC1Q9Y3T6 440 aaKnown RBP20.72■□□□□ 0.91
CLN3-263ENST00000637871 CEP350Q5VT06 3117 aa20.72■□□□□ 0.91
CLN3-263ENST00000637871 A0A087X0B3 334 aa20.71■□□□□ 0.91
CLN3-263ENST00000637871 UBA7P41226 1012 aa20.71■□□□□ 0.91
CLN3-263ENST00000637871 ZNF157P51786 506 aaPredicted RBP20.71■□□□□ 0.91
CLN3-263ENST00000637871 SPATA1Q5VX52 437 aa20.71■□□□□ 0.91
CLN3-263ENST00000637871 CYP4F22Q6NT55 531 aa20.71■□□□□ 0.91
CLN3-263ENST00000637871 PDXDC2PQ6P474 469 aa20.71■□□□□ 0.91
CLN3-263ENST00000637871 FILIP1Q7Z7B0 1213 aa20.71■□□□□ 0.91
CLN3-263ENST00000637871 CCDC112Q8NEF3 446 aa20.71■□□□□ 0.91
CLN3-263ENST00000637871 PICK1Q9NRD5 415 aa20.71■□□□□ 0.91
CLN3-263ENST00000637871 TUBB4AP04350 444 aa20.71■□□□□ 0.91
CLN3-263ENST00000637871 OR52Z1P0C646 297 aa20.71■□□□□ 0.91
CLN3-263ENST00000637871 ZNF18P17022 549 aa20.71■□□□□ 0.91
CLN3-263ENST00000637871 HSPA6P17066 643 aa20.71■□□□□ 0.91
CLN3-263ENST00000637871 PTPRAP18433 802 aa20.71■□□□□ 0.91
CLN3-263ENST00000637871 ADCY7P51828 1080 aa20.71■□□□□ 0.91
CLN3-263ENST00000637871 HOMER1Q86YM7 354 aa20.71■□□□□ 0.91
CLN3-263ENST00000637871 RASAL3Q86YV0 1011 aa20.71■□□□□ 0.91
CLN3-263ENST00000637871 OPTNQ96CV9 577 aa20.71■□□□□ 0.91
CLN3-263ENST00000637871 MTMR8Q96EF0 704 aa20.71■□□□□ 0.91
CLN3-263ENST00000637871 SLC10A4Q96EP9 437 aa20.71■□□□□ 0.91
CLN3-263ENST00000637871 CTAGE1Q96RT6 745 aa20.71■□□□□ 0.91
CLN3-263ENST00000637871 FANCLQ9NW38 375 aa20.71■□□□□ 0.91
CLN3-263ENST00000637871 SKILP12757 684 aa20.7■□□□□ 0.9
CLN3-263ENST00000637871 CDK11BP21127 795 aaKnown RBP20.7■□□□□ 0.9
CLN3-263ENST00000637871 SFPQP23246 707 aaKnown RBP eCLIP20.7■□□□□ 0.9
CLN3-263ENST00000637871 STAT6P42226 847 aa20.7■□□□□ 0.9
CLN3-263ENST00000637871 MRPL12P52815 198 aaKnown RBP20.7■□□□□ 0.9
CLN3-263ENST00000637871 IL17AQ16552 155 aa20.7■□□□□ 0.9
CLN3-263ENST00000637871 RGMBQ6NW40 437 aa20.7■□□□□ 0.9
CLN3-263ENST00000637871 TMEM179Q6ZVK1 233 aa20.7■□□□□ 0.9
CLN3-263ENST00000637871 DISC1Q9NRI5 854 aa20.7■□□□□ 0.9
CLN3-263ENST00000637871 NFE2L3Q9Y4A8 694 aa20.7■□□□□ 0.9
CLN3-263ENST00000637871 BAZ2BQ9UIF8 2168 aaKnown RBP20.7■□□□□ 0.9
CLN3-263ENST00000637871 KIF2AO00139 706 aaPredicted RBP20.69■□□□□ 0.9
CLN3-263ENST00000637871 CCP110O43303 1012 aa20.69■□□□□ 0.9
CLN3-263ENST00000637871 PPP1R2P41236 205 aa20.69■□□□□ 0.9
CLN3-263ENST00000637871 AFMP43652 599 aa20.69■□□□□ 0.9
CLN3-263ENST00000637871 DGKZQ13574 1117 aa20.69■□□□□ 0.9
CLN3-263ENST00000637871 KCNB1Q14721 858 aa20.69■□□□□ 0.9
CLN3-263ENST00000637871 RRAGBQ5VZM2 374 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms