RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 CTR9Q6PD62 1173 aa17.43■□□□□ 0.38
CLN3-249ENST00000636685 STK11IPQ8N1F8 1099 aa17.43■□□□□ 0.38
CLN3-249ENST00000636685 MFSD14AQ96MC6 490 aa17.43■□□□□ 0.38
CLN3-249ENST00000636685 MTG1Q9BT17 334 aaPredicted RBP17.43■□□□□ 0.38
CLN3-249ENST00000636685 CLIP2Q9UDT6 1046 aa17.43■□□□□ 0.38
CLN3-249ENST00000636685 C5orf42Q9H799 3197 aa17.43■□□□□ 0.38
CLN3-249ENST00000636685 RASA1P20936 1047 aa17.42■□□□□ 0.38
CLN3-249ENST00000636685 BFSP2Q13515 415 aa17.42■□□□□ 0.38
CLN3-249ENST00000636685 GPNMBQ14956 572 aa17.42■□□□□ 0.38
CLN3-249ENST00000636685 DUSP28Q4G0W2 176 aa17.42■□□□□ 0.38
CLN3-249ENST00000636685 TMEM57Q8N5G2 664 aa17.42■□□□□ 0.38
CLN3-249ENST00000636685 FRAT1Q92837 279 aaPredicted RBP17.42■□□□□ 0.38
CLN3-249ENST00000636685 C19orf67A6NJJ6 358 aa17.41■□□□□ 0.38
CLN3-249ENST00000636685 IPO8O15397 1037 aaKnown RBP17.41■□□□□ 0.38
CLN3-249ENST00000636685 CHGBP05060 677 aa17.41■□□□□ 0.38
CLN3-249ENST00000636685 TCTN1Q2MV58 587 aa17.41■□□□□ 0.38
CLN3-249ENST00000636685 FAM117BQ6P1L5 589 aa17.41■□□□□ 0.38
CLN3-249ENST00000636685 TRERF1Q96PN7 1200 aa17.41■□□□□ 0.38
CLN3-249ENST00000636685 PURBQ96QR8 312 aaKnown RBP17.41■□□□□ 0.38
CLN3-249ENST00000636685 RAD9AQ99638 391 aa17.41■□□□□ 0.38
CLN3-249ENST00000636685 VTA1Q9NP79 307 aa17.41■□□□□ 0.38
CLN3-249ENST00000636685 GPHNQ9NQX3 736 aaPredicted RBP17.41■□□□□ 0.38
CLN3-249ENST00000636685 ZBED9Q6R2W3 1325 aa17.41■□□□□ 0.38
CLN3-249ENST00000636685 MYH7P12883 1935 aa17.41■□□□□ 0.38
CLN3-249ENST00000636685 GJB5O95377 273 aa17.4■□□□□ 0.38
CLN3-249ENST00000636685 IRS1P35568 1242 aa17.4■□□□□ 0.38
CLN3-249ENST00000636685 ADD2P35612 726 aa17.4■□□□□ 0.38
CLN3-249ENST00000636685 CPT1AP50416 773 aa17.4■□□□□ 0.38
CLN3-249ENST00000636685 IER5LQ5T953 404 aa17.4■□□□□ 0.38
CLN3-249ENST00000636685 NFRKBQ6P4R8 1299 aa17.4■□□□□ 0.38
CLN3-249ENST00000636685 DDRGK1Q96HY6 314 aa17.4■□□□□ 0.38
CLN3-249ENST00000636685 C17orf80Q9BSJ5 609 aa17.4■□□□□ 0.38
CLN3-249ENST00000636685 WDR11Q9BZH6 1224 aa17.4■□□□□ 0.38
CLN3-249ENST00000636685 IL1RAPL2Q9NP60 686 aa17.4■□□□□ 0.38
CLN3-249ENST00000636685 EXOC6BQ9Y2D4 811 aa17.4■□□□□ 0.38
CLN3-249ENST00000636685 SLC4A4Q9Y6R1 1079 aa17.4■□□□□ 0.38
CLN3-249ENST00000636685 ZFHX2Q9C0A1 2572 aaPredicted RBP17.4■□□□□ 0.38
CLN3-249ENST00000636685 ALAS1P13196 640 aa17.39■□□□□ 0.37
CLN3-249ENST00000636685 EP400NLQ6ZTU2 488 aa17.39■□□□□ 0.37
CLN3-249ENST00000636685 ADHFE1Q8IWW8 467 aa17.39■□□□□ 0.37
CLN3-249ENST00000636685 LRRC47Q8N1G4 583 aaKnown RBP17.39■□□□□ 0.37
CLN3-249ENST00000636685 FBXO22Q8NEZ5 403 aa17.39■□□□□ 0.37
CLN3-249ENST00000636685 OR6J1Q8NGC5 347 aa17.39■□□□□ 0.37
CLN3-249ENST00000636685 CRBNQ96SW2 442 aa17.39■□□□□ 0.37
CLN3-249ENST00000636685 CYP39A1Q9NYL5 469 aa17.39■□□□□ 0.37
CLN3-249ENST00000636685 PRKAG3Q9UGI9 489 aa17.39■□□□□ 0.37
CLN3-249ENST00000636685 MUTYHQ9UIF7 546 aa17.39■□□□□ 0.37
CLN3-249ENST00000636685 NOD1Q9Y239 953 aa17.39■□□□□ 0.37
CLN3-249ENST00000636685 PTPRZ1P23471 2315 aaPredicted RBP17.38■□□□□ 0.37
CLN3-249ENST00000636685 IGKV6D-41A0A0C4DH26 115 aa17.38■□□□□ 0.37
CLN3-249ENST00000636685 PTPN5P54829 565 aa17.38■□□□□ 0.37
CLN3-249ENST00000636685 LRRFIP1Q32MZ4 808 aaKnown RBP17.38■□□□□ 0.37
CLN3-249ENST00000636685 MUM1L1Q5H9M0 696 aa17.38■□□□□ 0.37
CLN3-249ENST00000636685 CNKSR3Q6P9H4 555 aa17.38■□□□□ 0.37
CLN3-249ENST00000636685 MORC4Q8TE76 937 aa17.38■□□□□ 0.37
CLN3-249ENST00000636685 CHMP4CQ96CF2 233 aa17.38■□□□□ 0.37
CLN3-249ENST00000636685 MRPL38Q96DV4 380 aaKnown RBP17.38■□□□□ 0.37
CLN3-249ENST00000636685 MKNK2Q9HBH9 465 aa17.38■□□□□ 0.37
CLN3-249ENST00000636685 ISY1Q9ULR0 285 aaKnown RBP17.38■□□□□ 0.37
CLN3-249ENST00000636685 CACNA1HO95180 2353 aa17.38■□□□□ 0.37
CLN3-249ENST00000636685 TMEM232C9JQI7 657 aa17.37■□□□□ 0.37
CLN3-249ENST00000636685 BMP3P12645 472 aa17.37■□□□□ 0.37
CLN3-249ENST00000636685 CHMP4BP1P59074 171 aa17.37■□□□□ 0.37
CLN3-249ENST00000636685 SNAP25P60880 206 aa17.37■□□□□ 0.37
CLN3-249ENST00000636685 TKFCQ3LXA3 575 aa17.37■□□□□ 0.37
CLN3-249ENST00000636685 SLFN13Q68D06 897 aa17.37■□□□□ 0.37
CLN3-249ENST00000636685 AFAP1L1Q8TED9 768 aa17.37■□□□□ 0.37
CLN3-249ENST00000636685 MKL1Q969V6 931 aa17.37■□□□□ 0.37
CLN3-249ENST00000636685 UPF3BQ9BZI7 483 aaKnown RBP17.37■□□□□ 0.37
CLN3-249ENST00000636685 FAM50BQ9Y247 325 aa17.37■□□□□ 0.37
CLN3-249ENST00000636685 MICAL3Q7RTP6 2002 aa17.37■□□□□ 0.37
CLN3-249ENST00000636685 GFRA3O60609 400 aa17.36■□□□□ 0.37
CLN3-249ENST00000636685 FDX1P10109 184 aa17.36■□□□□ 0.37
CLN3-249ENST00000636685 PTPN11Q06124 597 aaPredicted RBP17.36■□□□□ 0.37
CLN3-249ENST00000636685 PTGISQ16647 500 aa17.36■□□□□ 0.37
CLN3-249ENST00000636685 TCEAL5Q5H9L2 206 aa17.36■□□□□ 0.37
CLN3-249ENST00000636685 NSMFQ6X4W1 530 aa17.36■□□□□ 0.37
CLN3-249ENST00000636685 PABPC5Q96DU9 382 aaKnown RBP17.36■□□□□ 0.37
CLN3-249ENST00000636685 CEP95Q96GE4 821 aa17.36■□□□□ 0.37
CLN3-249ENST00000636685 CTAGE1Q96RT6 745 aa17.36■□□□□ 0.37
CLN3-249ENST00000636685 ARPP21Q9UBL0 812 aaPredicted RBP17.36■□□□□ 0.37
CLN3-249ENST00000636685 ATG2AQ2TAZ0 1938 aa17.35■□□□□ 0.37
CLN3-249ENST00000636685 RBM47A0AV96 593 aaKnown RBP17.35■□□□□ 0.37
CLN3-249ENST00000636685 NBNO60934 754 aa17.35■□□□□ 0.37
CLN3-249ENST00000636685 CXCL10P02778 98 aa17.35■□□□□ 0.37
CLN3-249ENST00000636685 SELPP16109 830 aa17.35■□□□□ 0.37
CLN3-249ENST00000636685 FOXK2Q01167 660 aa17.35■□□□□ 0.37
CLN3-249ENST00000636685 TCF15Q12870 199 aa17.35■□□□□ 0.37
CLN3-249ENST00000636685 PTPROQ16827 1216 aa17.35■□□□□ 0.37
CLN3-249ENST00000636685 TIGD5Q53EQ6 642 aa17.35■□□□□ 0.37
CLN3-249ENST00000636685 HERC4Q5GLZ8 1057 aaPredicted RBP17.35■□□□□ 0.37
CLN3-249ENST00000636685 LRRC8DQ7L1W4 858 aa17.35■□□□□ 0.37
CLN3-249ENST00000636685 ERC1Q8IUD2 1116 aa17.35■□□□□ 0.37
CLN3-249ENST00000636685 RPAP2Q8IXW5 612 aaPredicted RBP17.35■□□□□ 0.37
CLN3-249ENST00000636685 CCDC155Q8N6L0 562 aa17.35■□□□□ 0.37
CLN3-249ENST00000636685 BANK1Q8NDB2 785 aa17.35■□□□□ 0.37
CLN3-249ENST00000636685 GMCL1P1Q8NEA9 526 aa17.35■□□□□ 0.37
CLN3-249ENST00000636685 CAGE1Q8TC20 777 aa17.35■□□□□ 0.37
CLN3-249ENST00000636685 DHX38Q92620 1227 aaKnown RBP17.35■□□□□ 0.37
CLN3-249ENST00000636685 FAM86C1Q9NVL1 165 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms