RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 SPATS2Q86XZ4 545 aaKnown RBP12.18□□□□□ -0.46
CLN3-244ENST00000636147 CCDC26Q8TAB7 109 aa12.18□□□□□ -0.46
CLN3-244ENST00000636147 ZIM3Q96PE6 472 aa12.18□□□□□ -0.46
CLN3-244ENST00000636147 A0A087X0B3 334 aa12.18□□□□□ -0.46
CLN3-244ENST00000636147 EIF4E1BA6NMX2 242 aaKnown RBP12.18□□□□□ -0.46
CLN3-244ENST00000636147 RNF225M0QZC1 329 aaPredicted RBP12.18□□□□□ -0.46
CLN3-244ENST00000636147 SYF2O95926 243 aaKnown RBP12.18□□□□□ -0.46
CLN3-244ENST00000636147 GNAQP50148 359 aa12.18□□□□□ -0.46
CLN3-244ENST00000636147 LLGL1Q15334 1064 aa12.18□□□□□ -0.46
CLN3-244ENST00000636147 NTRK3Q16288 839 aa12.18□□□□□ -0.46
CLN3-244ENST00000636147 OR2W6PQ8NHA6 318 aa12.18□□□□□ -0.46
CLN3-244ENST00000636147 SNX29Q8TEQ0 813 aa12.18□□□□□ -0.46
CLN3-244ENST00000636147 ANO9A1A5B4 782 aa12.17□□□□□ -0.46
CLN3-244ENST00000636147 TARSL2A2RTX5 802 aaKnown RBP12.17□□□□□ -0.46
CLN3-244ENST00000636147 GSG1L2A8MUP6 293 aa12.17□□□□□ -0.46
CLN3-244ENST00000636147 PSMD14O00487 310 aa12.17□□□□□ -0.46
CLN3-244ENST00000636147 CTNND1O60716 968 aaKnown RBP12.17□□□□□ -0.46
CLN3-244ENST00000636147 PLCG1P19174 1290 aa12.17□□□□□ -0.46
CLN3-244ENST00000636147 CCNE1P24864 410 aa12.17□□□□□ -0.46
CLN3-244ENST00000636147 SEPT7Q16181 437 aaKnown RBP12.17□□□□□ -0.46
CLN3-244ENST00000636147 HERC4Q5GLZ8 1057 aaPredicted RBP12.17□□□□□ -0.46
CLN3-244ENST00000636147 NLRP14Q86W24 1093 aa12.17□□□□□ -0.46
CLN3-244ENST00000636147 KIRREL3Q8IZU9 778 aa12.17□□□□□ -0.46
CLN3-244ENST00000636147 CCT8L2Q96SF2 557 aa12.17□□□□□ -0.46
CLN3-244ENST00000636147 DISC1Q9NRI5 854 aa12.17□□□□□ -0.46
CLN3-244ENST00000636147 KLC4Q9NSK0 619 aa12.17□□□□□ -0.46
CLN3-244ENST00000636147 ATP8A1Q9Y2Q0 1164 aa12.17□□□□□ -0.46
CLN3-244ENST00000636147 CD2APQ9Y5K6 639 aa12.17□□□□□ -0.46
CLN3-244ENST00000636147 STK36Q9NRP7 1315 aa12.17□□□□□ -0.46
CLN3-244ENST00000636147 ABCB4P21439 1286 aa12.17□□□□□ -0.46
CLN3-244ENST00000636147 NBPF3Q9H094 633 aa12.17□□□□□ -0.46
CLN3-244ENST00000636147 NDST4Q9H3R1 872 aa12.17□□□□□ -0.46
CLN3-244ENST00000636147 ATG3Q9NT62 314 aa12.17□□□□□ -0.46
CLN3-244ENST00000636147 RBM12Q9NTZ6 932 aaKnown RBP12.17□□□□□ -0.46
CLN3-244ENST00000636147 GEMIN8Q9NWZ8 242 aaKnown RBP12.17□□□□□ -0.46
CLN3-244ENST00000636147 BIN2Q9UBW5 565 aaPredicted RBP12.17□□□□□ -0.46
CLN3-244ENST00000636147 SAP30BPQ9UHR5 308 aaKnown RBP12.17□□□□□ -0.46
CLN3-244ENST00000636147 CAPN11Q9UMQ6 739 aa12.17□□□□□ -0.46
CLN3-244ENST00000636147 UTP11Q9Y3A2 253 aaKnown RBP12.17□□□□□ -0.46
CLN3-244ENST00000636147 LRRC53A6NM62 1247 aa12.17□□□□□ -0.46
CLN3-244ENST00000636147 MPHOSPH10O00566 681 aaKnown RBP12.17□□□□□ -0.46
CLN3-244ENST00000636147 PPP1R37O75864 691 aa12.17□□□□□ -0.46
CLN3-244ENST00000636147 LSP1P33241 339 aa12.17□□□□□ -0.46
CLN3-244ENST00000636147 FAM133BQ5BKY9 247 aaKnown RBP12.17□□□□□ -0.46
CLN3-244ENST00000636147 ENAHQ8N8S7 591 aaPredicted RBP12.17□□□□□ -0.46
CLN3-244ENST00000636147 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.17□□□□□ -0.46
CLN3-244ENST00000636147 RNPC3Q96LT9 517 aaKnown RBP12.17□□□□□ -0.46
CLN3-244ENST00000636147 NSRP1Q9H0G5 558 aaKnown RBP12.17□□□□□ -0.46
CLN3-244ENST00000636147 TFCP2L1Q9NZI6 479 aa12.17□□□□□ -0.46
CLN3-244ENST00000636147 TSKSQ9UJT2 592 aa12.17□□□□□ -0.46
CLN3-244ENST00000636147 SUFUQ9UMX1 484 aa12.17□□□□□ -0.46
CLN3-244ENST00000636147 CLGNO14967 610 aa12.16□□□□□ -0.46
CLN3-244ENST00000636147 PALMO75781 387 aa12.16□□□□□ -0.46
CLN3-244ENST00000636147 KCTD19Q17RG1 926 aaPredicted RBP12.16□□□□□ -0.46
CLN3-244ENST00000636147 RETREG2Q8NC44 543 aa12.16□□□□□ -0.46
CLN3-244ENST00000636147 CPVLQ9H3G5 476 aa12.16□□□□□ -0.46
CLN3-244ENST00000636147 ASAP1Q9ULH1 1129 aa12.16□□□□□ -0.46
CLN3-244ENST00000636147 PRPF3O43395 683 aaKnown RBP12.16□□□□□ -0.46
CLN3-244ENST00000636147 FCER1AP12319 257 aa12.16□□□□□ -0.46
CLN3-244ENST00000636147 NONOQ15233 471 aaKnown RBP eCLIP12.16□□□□□ -0.46
CLN3-244ENST00000636147 EARS2Q5JPH6 523 aaKnown RBP12.16□□□□□ -0.46
CLN3-244ENST00000636147 LRCH2Q5VUJ6 765 aa12.16□□□□□ -0.46
CLN3-244ENST00000636147 TBC1D1Q86TI0 1168 aaPredicted RBP12.16□□□□□ -0.46
CLN3-244ENST00000636147 DHTKD1Q96HY7 919 aaPredicted RBP12.16□□□□□ -0.46
CLN3-244ENST00000636147 THAP9Q9H5L6 903 aa12.16□□□□□ -0.46
CLN3-244ENST00000636147 EPB41L4AQ9HCS5 686 aaPredicted RBP12.16□□□□□ -0.46
CLN3-244ENST00000636147 ANKIB1Q9P2G1 1089 aa12.16□□□□□ -0.46
CLN3-244ENST00000636147 CAPN6Q9Y6Q1 641 aa12.16□□□□□ -0.46
CLN3-244ENST00000636147 WDR19Q8NEZ3 1342 aa12.16□□□□□ -0.46
CLN3-244ENST00000636147 PLEKHG1Q9ULL1 1385 aa12.16□□□□□ -0.46
CLN3-244ENST00000636147 ZSCAN5CA6NGD5 496 aaPredicted RBP12.16□□□□□ -0.46
CLN3-244ENST00000636147 PDE2AO00408 941 aaPredicted RBP12.16□□□□□ -0.46
CLN3-244ENST00000636147 IL2RBP14784 551 aa12.16□□□□□ -0.46
CLN3-244ENST00000636147 SARSP49591 514 aaKnown RBP12.16□□□□□ -0.46
CLN3-244ENST00000636147 EIF6P56537 245 aaKnown RBP12.16□□□□□ -0.46
CLN3-244ENST00000636147 MDM2Q00987 491 aaPredicted RBP12.16□□□□□ -0.46
CLN3-244ENST00000636147 DHX9Q08211 1270 aaKnown RBP12.16□□□□□ -0.46
CLN3-244ENST00000636147 HLFQ16534 295 aa12.16□□□□□ -0.46
CLN3-244ENST00000636147 CDKAL1Q5VV42 579 aa12.16□□□□□ -0.46
CLN3-244ENST00000636147 CCDC24Q8N4L8 307 aa12.16□□□□□ -0.46
CLN3-244ENST00000636147 PNMA1Q8ND90 353 aa12.16□□□□□ -0.46
CLN3-244ENST00000636147 TMOD1P28289 359 aa12.15□□□□□ -0.46
CLN3-244ENST00000636147 GNA11P29992 359 aa12.15□□□□□ -0.46
CLN3-244ENST00000636147 ZNF76P36508 570 aa12.15□□□□□ -0.46
CLN3-244ENST00000636147 SLCO1A2P46721 670 aa12.15□□□□□ -0.46
CLN3-244ENST00000636147 HERVK_113P62684 666 aa12.15□□□□□ -0.46
CLN3-244ENST00000636147 HDLBPQ00341 1268 aaKnown RBP12.15□□□□□ -0.46
CLN3-244ENST00000636147 CACNB1Q02641 598 aaPredicted RBP12.15□□□□□ -0.46
CLN3-244ENST00000636147 CCDC50Q8IVM0 306 aa12.15□□□□□ -0.46
CLN3-244ENST00000636147 ANKRD42Q8N9B4 389 aa12.15□□□□□ -0.46
CLN3-244ENST00000636147 FAM133AQ8N9E0 248 aa12.15□□□□□ -0.46
CLN3-244ENST00000636147 CCDC63Q8NA47 563 aa12.15□□□□□ -0.46
CLN3-244ENST00000636147 ZNF473Q8WTR7 871 aaKnown RBP12.15□□□□□ -0.46
CLN3-244ENST00000636147 LMBR1Q8WVP7 490 aa12.15□□□□□ -0.46
CLN3-244ENST00000636147 TAOK3Q9H2K8 898 aa12.15□□□□□ -0.46
CLN3-244ENST00000636147 XDHP47989 1333 aa12.15□□□□□ -0.46
CLN3-244ENST00000636147 ITIH6Q6UXX5 1313 aa12.15□□□□□ -0.46
CLN3-244ENST00000636147 SWAP70Q9UH65 585 aa12.15□□□□□ -0.46
CLN3-244ENST00000636147 FBXO3Q9UK99 471 aa12.15□□□□□ -0.46
CLN3-244ENST00000636147 SLC1A4P43007 532 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms