RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 PPP2R5DQ14738 602 aa5.71□□□□□ -1.5
SCN1A-211ENST00000635893 ZNF394Q53GI3 561 aa5.71□□□□□ -1.5
SCN1A-211ENST00000635893 NT5DC1Q5TFE4 455 aa5.71□□□□□ -1.5
SCN1A-211ENST00000635893 TSPAN17Q96FV3 270 aa5.71□□□□□ -1.5
SCN1A-211ENST00000635893 WHRNQ9P202 907 aa5.71□□□□□ -1.5
SCN1A-211ENST00000635893 SLC12A7Q9Y666 1083 aa5.71□□□□□ -1.5
SCN1A-211ENST00000635893 AURKAO14965 403 aa5.7□□□□□ -1.5
SCN1A-211ENST00000635893 ZNF16P17020 682 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-211ENST00000635893 MC3RP41968 323 aa5.7□□□□□ -1.5
SCN1A-211ENST00000635893 TRIM26Q12899 539 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-211ENST00000635893 COL9A2Q14055 689 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-211ENST00000635893 ZXDCQ2QGD7 858 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-211ENST00000635893 LZTR1Q8N653 840 aa5.7□□□□□ -1.5
SCN1A-211ENST00000635893 PEX11GQ96HA9 241 aa5.7□□□□□ -1.5
SCN1A-211ENST00000635893 CRBNQ96SW2 442 aa5.7□□□□□ -1.5
SCN1A-211ENST00000635893 HAUS7Q99871 368 aa5.7□□□□□ -1.5
SCN1A-211ENST00000635893 BACH2Q9BYV9 841 aa5.7□□□□□ -1.5
SCN1A-211ENST00000635893 NUDT5Q9UKK9 219 aa5.7□□□□□ -1.5
SCN1A-211ENST00000635893 PCDHGB7Q9Y5F8 929 aa5.7□□□□□ -1.5
SCN1A-211ENST00000635893 LTBP3Q9NS15 1303 aa5.7□□□□□ -1.5
SCN1A-211ENST00000635893 K7ESM1 405 aa5.69□□□□□ -1.5
SCN1A-211ENST00000635893 PMLP29590 882 aa5.69□□□□□ -1.5
SCN1A-211ENST00000635893 RBM10P98175 930 aaKnown RBP5.69□□□□□ -1.5
SCN1A-211ENST00000635893 DLX2Q07687 328 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-211ENST00000635893 SLC9A5Q14940 896 aa5.69□□□□□ -1.5
SCN1A-211ENST00000635893 GNPTABQ3T906 1256 aa5.69□□□□□ -1.5
SCN1A-211ENST00000635893 HEATR6Q6AI08 1181 aaKnown RBP5.69□□□□□ -1.5
SCN1A-211ENST00000635893 CARFQ8N187 725 aa5.69□□□□□ -1.5
SCN1A-211ENST00000635893 NETO2Q8NC67 525 aa5.69□□□□□ -1.5
SCN1A-211ENST00000635893 ADCY4Q8NFM4 1077 aa5.69□□□□□ -1.5
SCN1A-211ENST00000635893 CPA5Q8WXQ8 436 aa5.69□□□□□ -1.5
SCN1A-211ENST00000635893 MCMBPQ9BTE3 642 aa5.69□□□□□ -1.5
SCN1A-211ENST00000635893 KLHL25Q9H0H3 589 aa5.69□□□□□ -1.5
SCN1A-211ENST00000635893 GBP3Q9H0R5 595 aa5.69□□□□□ -1.5
SCN1A-211ENST00000635893 STXBP3O00186 592 aa5.68□□□□□ -1.5
SCN1A-211ENST00000635893 SEPHS1P49903 392 aa5.68□□□□□ -1.5
SCN1A-211ENST00000635893 FERMT3Q86UX7 667 aa5.68□□□□□ -1.5
SCN1A-211ENST00000635893 PHAXQ9H814 394 aaKnown RBP5.68□□□□□ -1.5
SCN1A-211ENST00000635893 RXFP1Q9HBX9 757 aa5.68□□□□□ -1.5
SCN1A-211ENST00000635893 DDX41Q9UJV9 622 aaKnown RBP5.68□□□□□ -1.5
SCN1A-211ENST00000635893 RWDD3Q9Y3V2 267 aa5.68□□□□□ -1.5
SCN1A-211ENST00000635893 NOBOXO60393 691 aa5.67□□□□□ -1.5
SCN1A-211ENST00000635893 PPM1BO75688 479 aa5.67□□□□□ -1.5
SCN1A-211ENST00000635893 ZBTB7AO95365 584 aa5.67□□□□□ -1.5
SCN1A-211ENST00000635893 GJA9P57773 515 aa5.67□□□□□ -1.5
SCN1A-211ENST00000635893 RACK1P63244 317 aaKnown RBP5.67□□□□□ -1.5
SCN1A-211ENST00000635893 CACNB2Q08289 660 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-211ENST00000635893 HHIPL2Q6UWX4 724 aa5.67□□□□□ -1.5
SCN1A-211ENST00000635893 CCDC81Q6ZN84 652 aa5.67□□□□□ -1.5
SCN1A-211ENST00000635893 ADAT2Q7Z6V5 191 aaKnown RBP5.67□□□□□ -1.5
SCN1A-211ENST00000635893 C19orf47Q8N9M1 422 aaKnown RBP5.67□□□□□ -1.5
SCN1A-211ENST00000635893 SPATA32Q96LK8 384 aa5.67□□□□□ -1.5
SCN1A-211ENST00000635893 BCAS3Q9H6U6 928 aa5.67□□□□□ -1.5
SCN1A-211ENST00000635893 NTMQ9P121 344 aa5.67□□□□□ -1.5
SCN1A-211ENST00000635893 FBLN5Q9UBX5 448 aa5.67□□□□□ -1.5
SCN1A-211ENST00000635893 BACE2Q9Y5Z0 518 aa5.67□□□□□ -1.5
SCN1A-211ENST00000635893 TRBV23OR9-2A0A075B6M9 112 aa5.66□□□□□ -1.5
SCN1A-211ENST00000635893 C2orf71A6NGG8 1288 aa5.66□□□□□ -1.5
SCN1A-211ENST00000635893 PPP1R11O60927 126 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-211ENST00000635893 VAMP4O75379 141 aa5.66□□□□□ -1.5
SCN1A-211ENST00000635893 PAMP19021 973 aa5.66□□□□□ -1.5
SCN1A-211ENST00000635893 SARSP49591 514 aaKnown RBP5.66□□□□□ -1.5
SCN1A-211ENST00000635893 EIF6P56537 245 aaKnown RBP5.66□□□□□ -1.5
SCN1A-211ENST00000635893 AMPD2Q01433 879 aa5.66□□□□□ -1.5
SCN1A-211ENST00000635893 SLC7A5Q01650 507 aa5.66□□□□□ -1.5
SCN1A-211ENST00000635893 GRB10Q13322 594 aa5.66□□□□□ -1.5
SCN1A-211ENST00000635893 ZNF827Q17R98 1081 aa5.66□□□□□ -1.5
SCN1A-211ENST00000635893 DPY19L1Q2PZI1 675 aa5.66□□□□□ -1.5
SCN1A-211ENST00000635893 ARHGEF39Q8N4T4 335 aa5.66□□□□□ -1.5
SCN1A-211ENST00000635893 SMARCC2Q8TAQ2 1214 aa5.66□□□□□ -1.5
SCN1A-211ENST00000635893 USP33Q8TEY7 942 aa5.66□□□□□ -1.5
SCN1A-211ENST00000635893 DDX1Q92499 740 aaKnown RBP5.66□□□□□ -1.5
SCN1A-211ENST00000635893 RCC1LQ96I51 464 aaKnown RBP5.66□□□□□ -1.5
SCN1A-211ENST00000635893 MTA3Q9BTC8 594 aa5.66□□□□□ -1.5
SCN1A-211ENST00000635893 LNPKQ9C0E8 428 aa5.66□□□□□ -1.5
SCN1A-211ENST00000635893 GINM1Q9NU53 330 aa5.66□□□□□ -1.5
SCN1A-211ENST00000635893 CGGBP1Q9UFW8 167 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-211ENST00000635893 PALD1Q9ULE6 856 aa5.66□□□□□ -1.5
SCN1A-211ENST00000635893 MYRFQ9Y2G1 1151 aa5.66□□□□□ -1.5
SCN1A-211ENST00000635893 NPHP3-ACAD11A0A0J9YXS1 232 aa5.65□□□□□ -1.5
SCN1A-211ENST00000635893 EPHX1P07099 455 aa5.65□□□□□ -1.5
SCN1A-211ENST00000635893 INSRRP14616 1297 aa5.65□□□□□ -1.5
SCN1A-211ENST00000635893 CNR2P34972 360 aa5.65□□□□□ -1.5
SCN1A-211ENST00000635893 SOX9P48436 509 aa5.65□□□□□ -1.5
SCN1A-211ENST00000635893 WWC2Q6AWC2 1192 aa5.65□□□□□ -1.5
SCN1A-211ENST00000635893 TTLL7Q6ZT98 887 aa5.65□□□□□ -1.5
SCN1A-211ENST00000635893 CPNE8Q86YQ8 564 aa5.65□□□□□ -1.5
SCN1A-211ENST00000635893 OR6P1Q8NGX9 317 aa5.65□□□□□ -1.5
SCN1A-211ENST00000635893 FGD4Q96M96 766 aa5.65□□□□□ -1.5
SCN1A-211ENST00000635893 NOX5Q96PH1 765 aa5.65□□□□□ -1.5
SCN1A-211ENST00000635893 GPR20Q99678 358 aa5.65□□□□□ -1.5
SCN1A-211ENST00000635893 SPATA6Q9NWH7 488 aaPredicted RBP5.65□□□□□ -1.5
SCN1A-211ENST00000635893 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.65□□□□□ -1.5
SCN1A-211ENST00000635893 GULP1Q9UBP9 304 aa5.65□□□□□ -1.5
SCN1A-211ENST00000635893 PCDHB10Q9UN67 800 aa5.65□□□□□ -1.5
SCN1A-211ENST00000635893 DUSP10Q9Y6W6 482 aa5.65□□□□□ -1.5
SCN1A-211ENST00000635893 A0A1W2PQH9 124 aa5.64□□□□□ -1.51
SCN1A-211ENST00000635893 MAGEA10P43363 369 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-211ENST00000635893 GIPRP48546 466 aa5.64□□□□□ -1.51
SCN1A-211ENST00000635893 PAK2Q13177 524 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms