RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 PWP2Q15269 919 aaKnown RBP23.98■■□□□ 1.43
CLN3-240ENST00000631023 LHX8Q68G74 356 aa23.98■■□□□ 1.43
CLN3-240ENST00000631023 SLC30A10Q6XR72 485 aa23.98■■□□□ 1.43
CLN3-240ENST00000631023 TMTC3Q6ZXV5 915 aa23.98■■□□□ 1.43
CLN3-240ENST00000631023 ANKLE1Q8NAG6 615 aa23.98■■□□□ 1.43
CLN3-240ENST00000631023 PIBF1Q8WXW3 757 aa23.98■■□□□ 1.43
CLN3-240ENST00000631023 MPHOSPH6Q99547 160 aaKnown RBP23.98■■□□□ 1.43
CLN3-240ENST00000631023 ABHD16BQ9H3Z7 469 aa23.98■■□□□ 1.43
CLN3-240ENST00000631023 CCDC196A0A1B0GTZ2 297 aa23.97■■□□□ 1.43
CLN3-240ENST00000631023 GOLGA8AA7E2F4 631 aa23.97■■□□□ 1.43
CLN3-240ENST00000631023 GOLGA8BA8MQT2 603 aa23.97■■□□□ 1.43
CLN3-240ENST00000631023 PPP1R11O60927 126 aaPredicted RBP23.97■■□□□ 1.43
CLN3-240ENST00000631023 SAMD3Q8N6K7 520 aa23.97■■□□□ 1.43
CLN3-240ENST00000631023 DNERQ8NFT8 737 aa23.97■■□□□ 1.43
CLN3-240ENST00000631023 MKI67P46013 3256 aaKnown RBP23.96■■□□□ 1.43
CLN3-240ENST00000631023 B4DLN1 442 aa23.96■■□□□ 1.43
CLN3-240ENST00000631023 MRPL12P52815 198 aaKnown RBP23.96■■□□□ 1.43
CLN3-240ENST00000631023 CMTR1Q8N1G2 835 aaKnown RBP23.96■■□□□ 1.43
CLN3-240ENST00000631023 MAP3K20Q9NYL2 800 aaKnown RBP23.96■■□□□ 1.43
CLN3-240ENST00000631023 FARP2O94887 1054 aaPredicted RBP23.95■■□□□ 1.43
CLN3-240ENST00000631023 SEC24BO95487 1268 aa23.95■■□□□ 1.43
CLN3-240ENST00000631023 ZNF865P0CJ78 1059 aaPredicted RBP23.95■■□□□ 1.43
CLN3-240ENST00000631023 METAP2P50579 478 aaKnown RBP eCLIP23.95■■□□□ 1.43
CLN3-240ENST00000631023 ACVR2BQ13705 512 aa23.95■■□□□ 1.43
CLN3-240ENST00000631023 CCDC82Q8N4S0 544 aa23.95■■□□□ 1.43
CLN3-240ENST00000631023 PURBQ96QR8 312 aaKnown RBP23.95■■□□□ 1.43
CLN3-240ENST00000631023 UPF3BQ9BZI7 483 aaKnown RBP23.95■■□□□ 1.43
CLN3-240ENST00000631023 ZHX1Q9UKY1 873 aaPredicted RBP23.95■■□□□ 1.43
CLN3-240ENST00000631023 CFBP00751 764 aa23.95■■□□□ 1.42
CLN3-240ENST00000631023 AKR1A1P14550 325 aa23.95■■□□□ 1.42
CLN3-240ENST00000631023 ALDH5A1P51649 535 aaPredicted RBP23.95■■□□□ 1.42
CLN3-240ENST00000631023 C8orf34Q49A92 452 aa23.95■■□□□ 1.42
CLN3-240ENST00000631023 TBC1D5Q92609 795 aa23.95■■□□□ 1.42
CLN3-240ENST00000631023 PDRG1Q9NUG6 133 aa23.95■■□□□ 1.42
CLN3-240ENST00000631023 FAM184BQ9ULE4 1060 aa23.95■■□□□ 1.42
CLN3-240ENST00000631023 RARBP10826 455 aa23.94■■□□□ 1.42
CLN3-240ENST00000631023 GTF3C3Q9Y5Q9 886 aa23.94■■□□□ 1.42
CLN3-240ENST00000631023 ASTN1O14525 1302 aa23.93■■□□□ 1.42
CLN3-240ENST00000631023 EVCP57679 992 aa23.93■■□□□ 1.42
CLN3-240ENST00000631023 ARRDC4Q8NCT1 418 aa23.93■■□□□ 1.42
CLN3-240ENST00000631023 SYTL5Q8TDW5 730 aaPredicted RBP23.93■■□□□ 1.42
CLN3-240ENST00000631023 MORC4Q8TE76 937 aa23.93■■□□□ 1.42
CLN3-240ENST00000631023 GHRHRQ02643 423 aa23.92■■□□□ 1.42
CLN3-240ENST00000631023 ANO1Q5XXA6 986 aa23.92■■□□□ 1.42
CLN3-240ENST00000631023 OPLAHO14841 1288 aa23.91■■□□□ 1.42
CLN3-240ENST00000631023 HSD17B4P51659 736 aa23.91■■□□□ 1.42
CLN3-240ENST00000631023 TOB2Q14106 344 aaPredicted RBP23.91■■□□□ 1.42
CLN3-240ENST00000631023 NECAB2Q7Z6G3 386 aa23.91■■□□□ 1.42
CLN3-240ENST00000631023 NSUN6Q8TEA1 469 aaKnown RBP23.91■■□□□ 1.42
CLN3-240ENST00000631023 IL17RAQ96F46 866 aa23.91■■□□□ 1.42
CLN3-240ENST00000631023 FAM217BQ9NTX9 383 aaPredicted RBP23.91■■□□□ 1.42
CLN3-240ENST00000631023 KIAA1217Q5T5P2 1943 aa23.91■■□□□ 1.42
CLN3-240ENST00000631023 GCOM1H8Y6P7 765 aaPredicted RBP23.91■■□□□ 1.42
CLN3-240ENST00000631023 POLR2MP0CAP2 368 aa23.91■■□□□ 1.42
CLN3-240ENST00000631023 CDC27P30260 824 aa23.91■■□□□ 1.42
CLN3-240ENST00000631023 PDE4DQ08499 809 aa23.91■■□□□ 1.42
CLN3-240ENST00000631023 CCDC144BQ3MJ40 725 aa23.91■■□□□ 1.42
CLN3-240ENST00000631023 UBE2Q1Q7Z7E8 422 aa23.91■■□□□ 1.42
CLN3-240ENST00000631023 PAWRQ96IZ0 340 aaKnown RBP23.91■■□□□ 1.42
CLN3-240ENST00000631023 RMDN3Q96TC7 470 aa23.91■■□□□ 1.42
CLN3-240ENST00000631023 VTA1Q9NP79 307 aa23.91■■□□□ 1.42
CLN3-240ENST00000631023 NID2Q14112 1375 aa23.9■■□□□ 1.42
CLN3-240ENST00000631023 TNRC18O15417 2968 aaPredicted RBP23.9■■□□□ 1.42
CLN3-240ENST00000631023 CNTNAP5Q8WYK1 1306 aa23.9■■□□□ 1.42
CLN3-240ENST00000631023 PDIA3P30101 505 aaKnown RBP23.9■■□□□ 1.42
CLN3-240ENST00000631023 ADD1P35611 737 aaKnown RBP23.9■■□□□ 1.42
CLN3-240ENST00000631023 ZNF274Q96GC6 653 aaPredicted RBP23.9■■□□□ 1.42
CLN3-240ENST00000631023 TAAR1Q96RJ0 339 aa23.9■■□□□ 1.42
CLN3-240ENST00000631023 IWS1Q96ST2 819 aa23.9■■□□□ 1.42
CLN3-240ENST00000631023 KATNBL1Q9H079 304 aa23.9■■□□□ 1.42
CLN3-240ENST00000631023 V9GY48 417 aaPredicted RBP23.9■■□□□ 1.42
CLN3-240ENST00000631023 LRRC37A2A6NM11 1700 aa23.89■■□□□ 1.42
CLN3-240ENST00000631023 hCG_1642624A0A1W2PR95 340 aa23.89■■□□□ 1.41
CLN3-240ENST00000631023 FUT2Q10981 343 aa23.89■■□□□ 1.41
CLN3-240ENST00000631023 ARHGEF16Q5VV41 709 aa23.89■■□□□ 1.41
CLN3-240ENST00000631023 EEPD1Q7L9B9 569 aa23.89■■□□□ 1.41
CLN3-240ENST00000631023 CUL5Q93034 780 aa23.89■■□□□ 1.41
CLN3-240ENST00000631023 ALDH8A1Q9H2A2 487 aaPredicted RBP23.89■■□□□ 1.41
CLN3-240ENST00000631023 XPNPEP3Q9NQH7 507 aa23.89■■□□□ 1.41
CLN3-240ENST00000631023 COL20A1Q9P218 1284 aa23.89■■□□□ 1.41
CLN3-240ENST00000631023 DUSP11O75319 330 aaKnown RBP23.88■■□□□ 1.41
CLN3-240ENST00000631023 EDNRBP24530 442 aa23.88■■□□□ 1.41
CLN3-240ENST00000631023 ANKRD1Q15327 319 aa23.88■■□□□ 1.41
CLN3-240ENST00000631023 HTATIP2Q9BUP3 242 aa23.88■■□□□ 1.41
CLN3-240ENST00000631023 DNM1LO00429 736 aa23.87■■□□□ 1.41
CLN3-240ENST00000631023 HOXA13P31271 388 aaPredicted RBP23.87■■□□□ 1.41
CLN3-240ENST00000631023 TNFAIP2Q03169 654 aa23.87■■□□□ 1.41
CLN3-240ENST00000631023 IQSEC1Q6DN90 963 aa23.87■■□□□ 1.41
CLN3-240ENST00000631023 HEATR3Q7Z4Q2 680 aa23.87■■□□□ 1.41
CLN3-240ENST00000631023 FBXO16Q8IX29 292 aaPredicted RBP23.87■■□□□ 1.41
CLN3-240ENST00000631023 RBM27Q9P2N5 1060 aaKnown RBP23.87■■□□□ 1.41
CLN3-240ENST00000631023 DDX49Q9Y6V7 483 aaKnown RBP23.87■■□□□ 1.41
CLN3-240ENST00000631023 KBTBD13C9JR72 458 aa23.86■■□□□ 1.41
CLN3-240ENST00000631023 MYCNP04198 464 aaPredicted RBP23.86■■□□□ 1.41
CLN3-240ENST00000631023 MNX1P50219 401 aaPredicted RBP23.86■■□□□ 1.41
CLN3-240ENST00000631023 NOL8Q76FK4 1167 aaKnown RBP23.86■■□□□ 1.41
CLN3-240ENST00000631023 RNF180Q86T96 592 aa23.86■■□□□ 1.41
CLN3-240ENST00000631023 DIS3LQ8TF46 1054 aaKnown RBP23.86■■□□□ 1.41
CLN3-240ENST00000631023 C11orf49Q9H6J7 331 aa23.86■■□□□ 1.41
CLN3-240ENST00000631023 SPC25Q9HBM1 224 aa23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms