RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 CXXC1Q9P0U4 656 aaPredicted RBP28.02■■■□□ 2.08
CPSF1-214ENST00000622776 LOC102724159A0A0B4J2E5 919 aa28.01■■■□□ 2.07
CPSF1-214ENST00000622776 HSPD1P10809 573 aaKnown RBP28.01■■■□□ 2.07
CPSF1-214ENST00000622776 CCL23P55773 120 aa28.01■■■□□ 2.07
CPSF1-214ENST00000622776 PWP2Q15269 919 aaKnown RBP28.01■■■□□ 2.07
CPSF1-214ENST00000622776 TICAM2Q86XR7 235 aa28.01■■■□□ 2.07
CPSF1-214ENST00000622776 CRBNQ96SW2 442 aa28.01■■■□□ 2.07
CPSF1-214ENST00000622776 PTPDC1A2A3K4 754 aa28■■■□□ 2.07
CPSF1-214ENST00000622776 RAB30Q15771 203 aa28■■■□□ 2.07
CPSF1-214ENST00000622776 GAS2L1Q99501 681 aaPredicted RBP28■■■□□ 2.07
CPSF1-214ENST00000622776 WDR11Q9BZH6 1224 aa28■■■□□ 2.07
CPSF1-214ENST00000622776 PRDM12Q9H4Q4 367 aa28■■■□□ 2.07
CPSF1-214ENST00000622776 MSRAQ9UJ68 235 aa28■■■□□ 2.07
CPSF1-214ENST00000622776 NCOR1O75376 2440 aa28■■■□□ 2.07
CPSF1-214ENST00000622776 CHD9Q3L8U1 2897 aa28■■■□□ 2.07
CPSF1-214ENST00000622776 ZMYM6O95789 1325 aa27.99■■■□□ 2.07
CPSF1-214ENST00000622776 SPTBN5Q9NRC6 3674 aaKnown RBP27.99■■■□□ 2.07
CPSF1-214ENST00000622776 PDHBP11177 359 aa27.99■■■□□ 2.07
CPSF1-214ENST00000622776 HAND2P61296 217 aa27.99■■■□□ 2.07
CPSF1-214ENST00000622776 NMIQ13287 307 aaPredicted RBP27.99■■■□□ 2.07
CPSF1-214ENST00000622776 HDAC1Q13547 482 aaPredicted RBP27.99■■■□□ 2.07
CPSF1-214ENST00000622776 OTOP2Q7RTS6 562 aa27.99■■■□□ 2.07
CPSF1-214ENST00000622776 ZNF589Q86UQ0 364 aaPredicted RBP27.99■■■□□ 2.07
CPSF1-214ENST00000622776 CLEC4DQ8WXI8 215 aa27.99■■■□□ 2.07
CPSF1-214ENST00000622776 WNT8AQ9H1J5 351 aa27.99■■■□□ 2.07
CPSF1-214ENST00000622776 RBM47A0AV96 593 aaKnown RBP27.98■■■□□ 2.07
CPSF1-214ENST00000622776 SLC30A10Q6XR72 485 aa27.98■■■□□ 2.07
CPSF1-214ENST00000622776 SYMPKQ92797 1274 aaKnown RBP27.98■■■□□ 2.07
CPSF1-214ENST00000622776 TTC14Q96N46 770 aa27.98■■■□□ 2.07
CPSF1-214ENST00000622776 ALDH8A1Q9H2A2 487 aaPredicted RBP27.98■■■□□ 2.07
CPSF1-214ENST00000622776 POLR3EQ9NVU0 708 aa27.98■■■□□ 2.07
CPSF1-214ENST00000622776 PNMA2Q9UL42 364 aa27.98■■■□□ 2.07
CPSF1-214ENST00000622776 CALML3P27482 149 aa27.97■■■□□ 2.07
CPSF1-214ENST00000622776 ZNF543Q08ER8 600 aa27.97■■■□□ 2.07
CPSF1-214ENST00000622776 RNF207Q6ZRF8 634 aa27.97■■■□□ 2.07
CPSF1-214ENST00000622776 PCP11498 1178 aaKnown RBP27.96■■■□□ 2.07
CPSF1-214ENST00000622776 AKNAD1Q5T1N1 836 aa27.96■■■□□ 2.07
CPSF1-214ENST00000622776 MFSD6Q6ZSS7 791 aa27.96■■■□□ 2.07
CPSF1-214ENST00000622776 RPUSD2Q8IZ73 545 aaKnown RBP27.96■■■□□ 2.07
CPSF1-214ENST00000622776 CCDC171Q6TFL3 1326 aa27.95■■■□□ 2.07
CPSF1-214ENST00000622776 MYL3P08590 195 aa27.95■■■□□ 2.06
CPSF1-214ENST00000622776 CPT1AP50416 773 aa27.95■■■□□ 2.06
CPSF1-214ENST00000622776 PURAQ00577 322 aaKnown RBP27.95■■■□□ 2.06
CPSF1-214ENST00000622776 OR6J1Q8NGC5 347 aa27.95■■■□□ 2.06
CPSF1-214ENST00000622776 NKX2-4Q9H2Z4 354 aa27.95■■■□□ 2.06
CPSF1-214ENST00000622776 WDR19Q8NEZ3 1342 aa27.94■■■□□ 2.06
CPSF1-214ENST00000622776 TRIM6-TRIM34B2RNG4 842 aa27.94■■■□□ 2.06
CPSF1-214ENST00000622776 SUPT20HL2P0C7V6 817 aa27.94■■■□□ 2.06
CPSF1-214ENST00000622776 SNHG28P0DPA3 235 aa27.94■■■□□ 2.06
CPSF1-214ENST00000622776 RPS6P62753 249 aaKnown RBP27.94■■■□□ 2.06
CPSF1-214ENST00000622776 PDE4DQ08499 809 aa27.94■■■□□ 2.06
CPSF1-214ENST00000622776 TJAP1Q5JTD0 557 aa27.94■■■□□ 2.06
CPSF1-214ENST00000622776 TBC1D10CQ8IV04 446 aa27.94■■■□□ 2.06
CPSF1-214ENST00000622776 PPM1EQ8WY54 764 aa27.94■■■□□ 2.06
CPSF1-214ENST00000622776 VWCEQ96DN2 955 aa27.94■■■□□ 2.06
CPSF1-214ENST00000622776 SCLYQ96I15 445 aa27.94■■■□□ 2.06
CPSF1-214ENST00000622776 SLC28A3Q9HAS3 691 aa27.94■■■□□ 2.06
CPSF1-214ENST00000622776 PRDM6Q9NQX0 595 aa27.94■■■□□ 2.06
CPSF1-214ENST00000622776 TRMT13Q9NUP7 481 aaKnown RBP27.94■■■□□ 2.06
CPSF1-214ENST00000622776 YBX2Q9Y2T7 364 aaKnown RBP27.94■■■□□ 2.06
CPSF1-214ENST00000622776 CYP2C9P11712 490 aa27.93■■■□□ 2.06
CPSF1-214ENST00000622776 EDNRBP24530 442 aa27.93■■■□□ 2.06
CPSF1-214ENST00000622776 ADGRE1Q14246 886 aa27.93■■■□□ 2.06
CPSF1-214ENST00000622776 MPHOSPH6Q99547 160 aaKnown RBP27.93■■■□□ 2.06
CPSF1-214ENST00000622776 MTG1Q9BT17 334 aaPredicted RBP27.93■■■□□ 2.06
CPSF1-214ENST00000622776 LNPKQ9C0E8 428 aa27.93■■■□□ 2.06
CPSF1-214ENST00000622776 GPHNQ9NQX3 736 aaPredicted RBP27.93■■■□□ 2.06
CPSF1-214ENST00000622776 SLC4A7Q9Y6M7 1214 aa27.93■■■□□ 2.06
CPSF1-214ENST00000622776 TNKSO95271 1327 aa27.92■■■□□ 2.06
CPSF1-214ENST00000622776 NKRFO15226 690 aaKnown RBP eCLIP27.92■■■□□ 2.06
CPSF1-214ENST00000622776 PPP2R5BQ15173 497 aa27.92■■■□□ 2.06
CPSF1-214ENST00000622776 BRDTQ58F21 947 aaPredicted RBP27.92■■■□□ 2.06
CPSF1-214ENST00000622776 DNERQ8NFT8 737 aa27.92■■■□□ 2.06
CPSF1-214ENST00000622776 RILPL2Q969X0 211 aa27.92■■■□□ 2.06
CPSF1-214ENST00000622776 RNF41Q9H4P4 317 aaPredicted RBP27.92■■■□□ 2.06
CPSF1-214ENST00000622776 SCFD2Q8WU76 684 aa27.91■■■□□ 2.06
CPSF1-214ENST00000622776 SCN10AQ9Y5Y9 1956 aa27.91■■■□□ 2.06
CPSF1-214ENST00000622776 CHD7Q9P2D1 2997 aa27.9■■■□□ 2.06
CPSF1-214ENST00000622776 ZBBXA8MT70 800 aa27.9■■■□□ 2.06
CPSF1-214ENST00000622776 RABGGTBP53611 331 aa27.9■■■□□ 2.06
CPSF1-214ENST00000622776 MFAP1P55081 439 aaKnown RBP27.9■■■□□ 2.06
CPSF1-214ENST00000622776 NBPF20Q3BBV1 942 aa27.9■■■□□ 2.06
CPSF1-214ENST00000622776 GPATCH4Q5T3I0 446 aaKnown RBP27.9■■■□□ 2.06
CPSF1-214ENST00000622776 ESR2Q92731 530 aa27.9■■■□□ 2.06
CPSF1-214ENST00000622776 RAD50Q92878 1312 aa27.9■■■□□ 2.06
CPSF1-214ENST00000622776 GBF1Q92538 1859 aa27.89■■■□□ 2.06
CPSF1-214ENST00000622776 PFKMP08237 780 aa27.89■■■□□ 2.06
CPSF1-214ENST00000622776 GOLGA8HP0CJ92 632 aa27.89■■■□□ 2.06
CPSF1-214ENST00000622776 SDSP20132 328 aa27.89■■■□□ 2.06
CPSF1-214ENST00000622776 IGFBP4P22692 258 aa27.89■■■□□ 2.06
CPSF1-214ENST00000622776 FAM47CQ5HY64 1035 aa27.89■■■□□ 2.06
CPSF1-214ENST00000622776 COPS5Q92905 334 aa27.89■■■□□ 2.06
CPSF1-214ENST00000622776 ZKSCAN3Q9BRR0 538 aa27.89■■■□□ 2.06
CPSF1-214ENST00000622776 NEDD4P46934 1319 aa27.89■■■□□ 2.05
CPSF1-214ENST00000622776 A6NJR5 290 aa27.88■■■□□ 2.05
CPSF1-214ENST00000622776 B4DLN1 442 aa27.88■■■□□ 2.05
CPSF1-214ENST00000622776 KPNA6O60684 536 aa27.88■■■□□ 2.05
CPSF1-214ENST00000622776 MRPL12P52815 198 aaKnown RBP27.88■■■□□ 2.05
CPSF1-214ENST00000622776 TTLL4Q14679 1199 aa27.88■■■□□ 2.05
CPSF1-214ENST00000622776 USH1GQ495M9 461 aa27.88■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms