RNA–Protein interactions for RNA: ENST00000621016.4

CDH1-214, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 3,304 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-214ENST00000621016 NKRFO15226 690 aaKnown RBP eCLIP11.9□□□□□ -0.5
CDH1-214ENST00000621016 PARP1P09874 1014 aaKnown RBP11.9□□□□□ -0.5
CDH1-214ENST00000621016 CALM1P0DP23 149 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 CALM2P0DP24 149 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 CALM3P0DP25 149 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 KCNB1Q14721 858 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 TCP11X2Q5H9J9 407 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 AMIGO3Q86WK7 504 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 CNGA4Q8IV77 575 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 C3orf20Q8ND61 904 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 PNKPQ96T60 521 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 DUSP10Q9Y6W6 482 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 PKD1L3Q7Z443 1732 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 ZNF142P52746 1687 aaPredicted RBP11.9□□□□□ -0.5
CDH1-214ENST00000621016 MYH2Q9UKX2 1941 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 EBAG9O00559 213 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 FCER1AP12319 257 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 MTIF2P46199 727 aaKnown RBP11.9□□□□□ -0.5
CDH1-214ENST00000621016 RCSD1Q6JBY9 416 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 CSGALNACT2Q8N6G5 542 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 ANKRD13CQ8N6S4 541 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 BRIP1Q9BX63 1249 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 YIPF3Q9GZM5 350 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 SLC39A2Q9NP94 309 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 KCND1Q9NSA2 647 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 ABHD10Q9NUJ1 306 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 AGPAT5Q9NUQ2 364 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 ZNF232Q9UNY5 417 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 NUP188Q5SRE5 1749 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 SLIT2O94813 1529 aa11.9□□□□□ -0.5
CDH1-214ENST00000621016 COL1A1P02452 1464 aaPredicted RBP11.9□□□□□ -0.51
CDH1-214ENST00000621016 MARCH6O60337 910 aa11.89□□□□□ -0.51
CDH1-214ENST00000621016 KCNJ6P48051 423 aa11.89□□□□□ -0.51
CDH1-214ENST00000621016 PFKFB3Q16875 520 aaPredicted RBP11.89□□□□□ -0.51
CDH1-214ENST00000621016 CCDC122Q5T0U0 273 aa11.89□□□□□ -0.51
CDH1-214ENST00000621016 RNF187Q5TA31 235 aaPredicted RBP11.89□□□□□ -0.51
CDH1-214ENST00000621016 GPR161Q8N6U8 529 aaKnown RBP11.89□□□□□ -0.51
CDH1-214ENST00000621016 NOA1Q8NC60 698 aaKnown RBP11.89□□□□□ -0.51
CDH1-214ENST00000621016 CAGE1Q8TC20 777 aa11.89□□□□□ -0.51
CDH1-214ENST00000621016 NGLY1Q96IV0 654 aa11.89□□□□□ -0.51
CDH1-214ENST00000621016 CABS1Q96KC9 395 aa11.89□□□□□ -0.51
CDH1-214ENST00000621016 SH3GL3Q99963 347 aa11.89□□□□□ -0.51
CDH1-214ENST00000621016 LUC7L2Q9Y383 392 aaKnown RBP11.89□□□□□ -0.51
CDH1-214ENST00000621016 KLRF2D3W0D1 207 aa11.89□□□□□ -0.51
CDH1-214ENST00000621016 ATP2C2O75185 946 aa11.89□□□□□ -0.51
CDH1-214ENST00000621016 PDE4DQ08499 809 aa11.89□□□□□ -0.51
CDH1-214ENST00000621016 TSPYL2Q9H2G4 693 aaPredicted RBP11.89□□□□□ -0.51
CDH1-214ENST00000621016 RMI1Q9H9A7 625 aa11.89□□□□□ -0.51
CDH1-214ENST00000621016 KANSL2Q9H9L4 492 aa11.89□□□□□ -0.51
CDH1-214ENST00000621016 PSD3Q9NYI0 1048 aa11.89□□□□□ -0.51
CDH1-214ENST00000621016 TAF1P21675 1872 aa11.89□□□□□ -0.51
CDH1-214ENST00000621016 TPTE2Q6XPS3 522 aa11.89□□□□□ -0.51
CDH1-214ENST00000621016 AMOTL1Q8IY63 956 aa11.89□□□□□ -0.51
CDH1-214ENST00000621016 GSPT2Q8IYD1 628 aaKnown RBP11.89□□□□□ -0.51
CDH1-214ENST00000621016 SPATA20Q8TB22 786 aa11.89□□□□□ -0.51
CDH1-214ENST00000621016 PANX2Q96RD6 677 aa11.89□□□□□ -0.51
CDH1-214ENST00000621016 ACBD3Q9H3P7 528 aa11.89□□□□□ -0.51
CDH1-214ENST00000621016 ZHX3Q9H4I2 956 aa11.89□□□□□ -0.51
CDH1-214ENST00000621016 ABCB6Q9NP58 842 aa11.89□□□□□ -0.51
CDH1-214ENST00000621016 JADE2Q9NQC1 790 aa11.89□□□□□ -0.51
CDH1-214ENST00000621016 FAM207AQ9NSI2 230 aaPredicted RBP11.89□□□□□ -0.51
CDH1-214ENST00000621016 TMEM260Q9NX78 707 aa11.89□□□□□ -0.51
CDH1-214ENST00000621016 TBC1D7Q9P0N9 293 aa11.89□□□□□ -0.51
CDH1-214ENST00000621016 MCM8Q9UJA3 840 aa11.89□□□□□ -0.51
CDH1-214ENST00000621016 BAZ2AQ9UIF9 1905 aaKnown RBP11.88□□□□□ -0.51
CDH1-214ENST00000621016 RIMBP2O15034 1052 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 CYTH3O43739 400 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 GTPBP6O43824 516 aaPredicted RBP11.88□□□□□ -0.51
CDH1-214ENST00000621016 DDAH1O94760 285 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 RBBP5Q15291 538 aaKnown RBP11.88□□□□□ -0.51
CDH1-214ENST00000621016 CDKAL1Q5VV42 579 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 PDXDC2PQ6P474 469 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 KRT26Q7Z3Y9 468 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 FCHSD1Q86WN1 690 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 SMCR8Q8TEV9 937 aaPredicted RBP11.88□□□□□ -0.51
CDH1-214ENST00000621016 TANGO6Q9C0B7 1094 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 KDM4CQ9H3R0 1056 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 EPN1Q9Y6I3 576 aaPredicted RBP11.88□□□□□ -0.51
CDH1-214ENST00000621016 LMTK3Q96Q04 1460 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 LAMB4A4D0S4 1761 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 CTAGE15A4D2H0 777 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 CPP00450 1065 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 CTAGE8P0CG41 777 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 PDHBP11177 359 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 LRRC41Q15345 812 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 TXNRD1Q16881 649 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 SRGAP1Q7Z6B7 1085 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 CTAGE6Q86UF2 777 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 CTAGE4Q8IX94 777 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 GPCPD1Q9NPB8 672 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 CDC23Q9UJX2 597 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 ANAPC4Q9UJX5 808 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 PLCG1P19174 1290 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 ZNF658Q5TYW1 1059 aaPredicted RBP11.88□□□□□ -0.51
CDH1-214ENST00000621016 CYP26C1Q6V0L0 522 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 SH3RF1Q7Z6J0 888 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 FBXO33Q7Z6M2 555 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 COA7Q96BR5 231 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 DISC1Q9NRI5 854 aa11.88□□□□□ -0.51
CDH1-214ENST00000621016 TCP11L1Q9NUJ3 509 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms