RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 LARGE1O95461 756 aa6.64□□□□□ -1.35
CPNE3-208ENST00000614678 EIF2AK2P19525 551 aaKnown RBP6.64□□□□□ -1.35
CPNE3-208ENST00000614678 MCM5P33992 734 aa6.64□□□□□ -1.35
CPNE3-208ENST00000614678 TOB2Q14106 344 aaPredicted RBP6.64□□□□□ -1.35
CPNE3-208ENST00000614678 C8orf34Q49A92 452 aa6.64□□□□□ -1.35
CPNE3-208ENST00000614678 FAM160B2Q86V87 743 aa6.64□□□□□ -1.35
CPNE3-208ENST00000614678 AIFM3Q96NN9 605 aa6.64□□□□□ -1.35
CPNE3-208ENST00000614678 OGDHLQ9ULD0 1010 aa6.64□□□□□ -1.35
CPNE3-208ENST00000614678 RGS20O76081 388 aa6.64□□□□□ -1.35
CPNE3-208ENST00000614678 SMPD1P17405 629 aa6.64□□□□□ -1.35
CPNE3-208ENST00000614678 UBE2SQ16763 222 aa6.64□□□□□ -1.35
CPNE3-208ENST00000614678 TAPT1Q6NXT6 567 aa6.64□□□□□ -1.35
CPNE3-208ENST00000614678 APOA5Q6Q788 366 aa6.64□□□□□ -1.35
CPNE3-208ENST00000614678 FCHSD1Q86WN1 690 aa6.64□□□□□ -1.35
CPNE3-208ENST00000614678 TICAM2Q86XR7 235 aa6.64□□□□□ -1.35
CPNE3-208ENST00000614678 GTF3C2Q8WUA4 911 aaPredicted RBP6.64□□□□□ -1.35
CPNE3-208ENST00000614678 ZNF236Q9UL36 1845 aa6.64□□□□□ -1.35
CPNE3-208ENST00000614678 KCNA4P22459 653 aa6.64□□□□□ -1.35
CPNE3-208ENST00000614678 ACVR2BQ13705 512 aa6.64□□□□□ -1.35
CPNE3-208ENST00000614678 MFSD14CQ5VZR4 134 aa6.64□□□□□ -1.35
CPNE3-208ENST00000614678 RNF207Q6ZRF8 634 aa6.64□□□□□ -1.35
CPNE3-208ENST00000614678 PCDHA1Q9Y5I3 950 aa6.64□□□□□ -1.35
CPNE3-208ENST00000614678 KLF18A0A0U1RQI7 1052 aa6.63□□□□□ -1.35
CPNE3-208ENST00000614678 PCP11498 1178 aaKnown RBP6.63□□□□□ -1.35
CPNE3-208ENST00000614678 FUT2Q10981 343 aa6.63□□□□□ -1.35
CPNE3-208ENST00000614678 LRRC41Q15345 812 aa6.63□□□□□ -1.35
CPNE3-208ENST00000614678 C7orf61Q8IZ16 206 aa6.63□□□□□ -1.35
CPNE3-208ENST00000614678 SYTL5Q8TDW5 730 aaPredicted RBP6.63□□□□□ -1.35
CPNE3-208ENST00000614678 GTF3C3Q9Y5Q9 886 aa6.63□□□□□ -1.35
CPNE3-208ENST00000614678 SYNRGQ9UMZ2 1314 aa6.63□□□□□ -1.35
CPNE3-208ENST00000614678 PLA2G6O60733 806 aa6.63□□□□□ -1.35
CPNE3-208ENST00000614678 ALDH5A1P51649 535 aaPredicted RBP6.63□□□□□ -1.35
CPNE3-208ENST00000614678 PSMC6P62333 389 aa6.63□□□□□ -1.35
CPNE3-208ENST00000614678 LY6KQ17RY6 165 aa6.63□□□□□ -1.35
CPNE3-208ENST00000614678 CASC1Q6TDU7 716 aa6.63□□□□□ -1.35
CPNE3-208ENST00000614678 DHX32Q7L7V1 743 aaKnown RBP6.63□□□□□ -1.35
CPNE3-208ENST00000614678 MTMR8Q96EF0 704 aa6.63□□□□□ -1.35
CPNE3-208ENST00000614678 RIOX1Q9H6W3 641 aa6.63□□□□□ -1.35
CPNE3-208ENST00000614678 LRRC37A2A6NM11 1700 aa6.63□□□□□ -1.35
CPNE3-208ENST00000614678 SEPT4O43236 478 aa6.63□□□□□ -1.35
CPNE3-208ENST00000614678 ADAMTS4O75173 837 aa6.63□□□□□ -1.35
CPNE3-208ENST00000614678 CHMP4BP1P59074 171 aa6.63□□□□□ -1.35
CPNE3-208ENST00000614678 SP2Q02086 613 aa6.63□□□□□ -1.35
CPNE3-208ENST00000614678 GPATCH4Q5T3I0 446 aaKnown RBP6.63□□□□□ -1.35
CPNE3-208ENST00000614678 FBXO11Q86XK2 927 aa6.63□□□□□ -1.35
CPNE3-208ENST00000614678 ABRAQ8N0Z2 381 aa6.63□□□□□ -1.35
CPNE3-208ENST00000614678 FANCBQ8NB91 859 aa6.63□□□□□ -1.35
CPNE3-208ENST00000614678 CHST13Q8NET6 341 aa6.63□□□□□ -1.35
CPNE3-208ENST00000614678 KCNB2Q92953 911 aa6.63□□□□□ -1.35
CPNE3-208ENST00000614678 XPNPEP3Q9NQH7 507 aa6.63□□□□□ -1.35
CPNE3-208ENST00000614678 RTEL1Q9NZ71 1219 aa6.63□□□□□ -1.35
CPNE3-208ENST00000614678 COLQQ9Y215 455 aaPredicted RBP6.63□□□□□ -1.35
CPNE3-208ENST00000614678 ZBTB5O15062 677 aa6.62□□□□□ -1.35
CPNE3-208ENST00000614678 COL6A1P12109 1028 aa6.62□□□□□ -1.35
CPNE3-208ENST00000614678 ASPRV1Q53RT3 343 aa6.62□□□□□ -1.35
CPNE3-208ENST00000614678 CATIPQ7Z7H3 387 aa6.62□□□□□ -1.35
CPNE3-208ENST00000614678 CYP2W1Q8TAV3 490 aa6.62□□□□□ -1.35
CPNE3-208ENST00000614678 TMEM260Q9NX78 707 aa6.62□□□□□ -1.35
CPNE3-208ENST00000614678 SYNPO2Q9UMS6 1093 aa6.62□□□□□ -1.35
CPNE3-208ENST00000614678 MYH7BA7E2Y1 1941 aa6.62□□□□□ -1.35
CPNE3-208ENST00000614678 ERICH2A1L162 156 aa6.62□□□□□ -1.35
CPNE3-208ENST00000614678 CCDC69A6NI79 296 aa6.62□□□□□ -1.35
CPNE3-208ENST00000614678 C6orf222P0C671 652 aaPredicted RBP6.62□□□□□ -1.35
CPNE3-208ENST00000614678 OAZ1P54368 228 aa6.62□□□□□ -1.35
CPNE3-208ENST00000614678 KCNA10Q16322 511 aa6.62□□□□□ -1.35
CPNE3-208ENST00000614678 CXCL17Q6UXB2 119 aa6.62□□□□□ -1.35
CPNE3-208ENST00000614678 SEPT14Q6ZU15 432 aa6.62□□□□□ -1.35
CPNE3-208ENST00000614678 RASGRP4Q8TDF6 673 aa6.62□□□□□ -1.35
CPNE3-208ENST00000614678 SLC12A7Q9Y666 1083 aa6.62□□□□□ -1.35
CPNE3-208ENST00000614678 V9GY48 417 aaPredicted RBP6.62□□□□□ -1.35
CPNE3-208ENST00000614678 GRIN2DO15399 1336 aa6.62□□□□□ -1.35
CPNE3-208ENST00000614678 DYNC1LI2O43237 492 aaPredicted RBP6.62□□□□□ -1.35
CPNE3-208ENST00000614678 MDM2Q00987 491 aaPredicted RBP6.62□□□□□ -1.35
CPNE3-208ENST00000614678 CHRDL2Q6WN34 429 aa6.62□□□□□ -1.35
CPNE3-208ENST00000614678 NECAB1Q8N987 351 aa6.62□□□□□ -1.35
CPNE3-208ENST00000614678 GJA10Q969M2 543 aa6.62□□□□□ -1.35
CPNE3-208ENST00000614678 KIAA1217Q5T5P2 1943 aa6.62□□□□□ -1.35
CPNE3-208ENST00000614678 CNTNAP5Q8WYK1 1306 aa6.62□□□□□ -1.35
CPNE3-208ENST00000614678 RPS6KB1P23443 525 aa6.61□□□□□ -1.35
CPNE3-208ENST00000614678 ST3GAL1Q11201 340 aa6.61□□□□□ -1.35
CPNE3-208ENST00000614678 TSGA10IPQ3SY00 556 aa6.61□□□□□ -1.35
CPNE3-208ENST00000614678 TRIM60Q495X7 471 aa6.61□□□□□ -1.35
CPNE3-208ENST00000614678 WWC2Q6AWC2 1192 aa6.61□□□□□ -1.35
CPNE3-208ENST00000614678 KIF2CQ99661 725 aa6.61□□□□□ -1.35
CPNE3-208ENST00000614678 PKD2L1Q9P0L9 805 aa6.61□□□□□ -1.35
CPNE3-208ENST00000614678 MYO9BQ13459 2157 aa6.61□□□□□ -1.35
CPNE3-208ENST00000614678 MEIS2O14770 477 aa6.61□□□□□ -1.35
CPNE3-208ENST00000614678 CD2BP2O95400 341 aaKnown RBP6.61□□□□□ -1.35
CPNE3-208ENST00000614678 MYCLP12524 364 aaPredicted RBP6.61□□□□□ -1.35
CPNE3-208ENST00000614678 FOSBP53539 338 aa6.61□□□□□ -1.35
CPNE3-208ENST00000614678 CCSAPQ6IQ19 270 aaPredicted RBP6.61□□□□□ -1.35
CPNE3-208ENST00000614678 TMTC3Q6ZXV5 915 aa6.61□□□□□ -1.35
CPNE3-208ENST00000614678 ZBTB10Q96DT7 871 aa6.61□□□□□ -1.35
CPNE3-208ENST00000614678 RMDN3Q96TC7 470 aa6.61□□□□□ -1.35
CPNE3-208ENST00000614678 RBM27Q9P2N5 1060 aaKnown RBP6.61□□□□□ -1.35
CPNE3-208ENST00000614678 TPCN1Q9ULQ1 816 aa6.61□□□□□ -1.35
CPNE3-208ENST00000614678 GNEQ9Y223 722 aaKnown RBP6.61□□□□□ -1.35
CPNE3-208ENST00000614678 CNPY2Q9Y2B0 182 aa6.61□□□□□ -1.35
CPNE3-208ENST00000614678 UMODL1Q5DID0 1318 aa6.61□□□□□ -1.35
CPNE3-208ENST00000614678 GOLGA8BA8MQT2 603 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms