RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 PURBQ96QR8 312 aaKnown RBP19.12■□□□□ 0.65
CCDC28A-202ENST00000611852 UNC93B1Q9H1C4 597 aa19.12■□□□□ 0.65
CCDC28A-202ENST00000611852 RBBP6Q7Z6E9 1792 aaKnown RBP19.12■□□□□ 0.65
CCDC28A-202ENST00000611852 RPTORQ8N122 1335 aa19.12■□□□□ 0.65
CCDC28A-202ENST00000611852 PFKFB2O60825 505 aa19.11■□□□□ 0.65
CCDC28A-202ENST00000611852 CCL5P13501 91 aa19.11■□□□□ 0.65
CCDC28A-202ENST00000611852 IFNAR1P17181 557 aa19.11■□□□□ 0.65
CCDC28A-202ENST00000611852 GHRHRQ02643 423 aa19.11■□□□□ 0.65
CCDC28A-202ENST00000611852 SLKQ9H2G2 1235 aaPredicted RBP19.11■□□□□ 0.65
CCDC28A-202ENST00000611852 CFBP00751 764 aa19.1■□□□□ 0.65
CCDC28A-202ENST00000611852 HSD17B4P51659 736 aa19.1■□□□□ 0.65
CCDC28A-202ENST00000611852 SCRN1Q12765 414 aa19.1■□□□□ 0.65
CCDC28A-202ENST00000611852 RABEP1Q15276 862 aa19.1■□□□□ 0.65
CCDC28A-202ENST00000611852 ME3Q16798 604 aa19.1■□□□□ 0.65
CCDC28A-202ENST00000611852 PHKBQ93100 1093 aa19.1■□□□□ 0.65
CCDC28A-202ENST00000611852 RNF208Q9H0X6 261 aa19.1■□□□□ 0.65
CCDC28A-202ENST00000611852 SYNGAP1Q96PV0 1343 aa19.1■□□□□ 0.65
CCDC28A-202ENST00000611852 KIAA0100Q14667 2235 aaKnown RBP19.1■□□□□ 0.65
CCDC28A-202ENST00000611852 PRPF3O43395 683 aaKnown RBP19.1■□□□□ 0.65
CCDC28A-202ENST00000611852 PPFIA3O75145 1194 aa19.1■□□□□ 0.65
CCDC28A-202ENST00000611852 WWC2Q6AWC2 1192 aa19.1■□□□□ 0.65
CCDC28A-202ENST00000611852 HEATR3Q7Z4Q2 680 aa19.1■□□□□ 0.65
CCDC28A-202ENST00000611852 SYTL5Q8TDW5 730 aaPredicted RBP19.1■□□□□ 0.65
CCDC28A-202ENST00000611852 GPKOWQ92917 476 aaPredicted RBP eCLIP19.1■□□□□ 0.65
CCDC28A-202ENST00000611852 HMX1Q9NP08 348 aaPredicted RBP19.1■□□□□ 0.65
CCDC28A-202ENST00000611852 ADD3Q9UEY8 706 aaKnown RBP19.1■□□□□ 0.65
CCDC28A-202ENST00000611852 BRCA2P51587 3418 aa19.09■□□□□ 0.65
CCDC28A-202ENST00000611852 CPLX1O14810 134 aa19.09■□□□□ 0.65
CCDC28A-202ENST00000611852 LARGE1O95461 756 aa19.09■□□□□ 0.65
CCDC28A-202ENST00000611852 SNAI1O95863 264 aaPredicted RBP19.09■□□□□ 0.65
CCDC28A-202ENST00000611852 CYBAP13498 195 aa19.09■□□□□ 0.65
CCDC28A-202ENST00000611852 PFKFB3Q16875 520 aaPredicted RBP19.09■□□□□ 0.65
CCDC28A-202ENST00000611852 ARMCX2Q7L311 632 aa19.09■□□□□ 0.65
CCDC28A-202ENST00000611852 SAMD3Q8N6K7 520 aa19.09■□□□□ 0.65
CCDC28A-202ENST00000611852 TRPV1Q8NER1 839 aa19.09■□□□□ 0.65
CCDC28A-202ENST00000611852 TMEM106CQ9BVX2 250 aa19.09■□□□□ 0.65
CCDC28A-202ENST00000611852 RNF26Q9BY78 433 aaPredicted RBP19.09■□□□□ 0.65
CCDC28A-202ENST00000611852 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.09■□□□□ 0.65
CCDC28A-202ENST00000611852 PAK6Q9NQU5 681 aaPredicted RBP19.09■□□□□ 0.65
CCDC28A-202ENST00000611852 MAP3K20Q9NYL2 800 aaKnown RBP19.09■□□□□ 0.65
CCDC28A-202ENST00000611852 COL20A1Q9P218 1284 aa19.09■□□□□ 0.65
CCDC28A-202ENST00000611852 RBM27Q9P2N5 1060 aaKnown RBP19.09■□□□□ 0.65
CCDC28A-202ENST00000611852 MCM3APO60318 1980 aa19.09■□□□□ 0.65
CCDC28A-202ENST00000611852 ASB14A6NK59 587 aa19.08■□□□□ 0.64
CCDC28A-202ENST00000611852 hCG_1984214I3L0E3 225 aa19.08■□□□□ 0.64
CCDC28A-202ENST00000611852 CCND3P30281 292 aaPredicted RBP19.08■□□□□ 0.64
CCDC28A-202ENST00000611852 ALDH5A1P51649 535 aaPredicted RBP19.08■□□□□ 0.64
CCDC28A-202ENST00000611852 PKN1Q16512 942 aa19.08■□□□□ 0.64
CCDC28A-202ENST00000611852 PRAMEF19Q5SWL8 479 aa19.08■□□□□ 0.64
CCDC28A-202ENST00000611852 ZNF713Q8N859 430 aaPredicted RBP19.08■□□□□ 0.64
CCDC28A-202ENST00000611852 DNERQ8NFT8 737 aa19.08■□□□□ 0.64
CCDC28A-202ENST00000611852 SLC26A6Q9BXS9 759 aa19.08■□□□□ 0.64
CCDC28A-202ENST00000611852 NRBP1Q9UHY1 535 aa19.08■□□□□ 0.64
CCDC28A-202ENST00000611852 LIMCH1Q9UPQ0 1083 aa19.08■□□□□ 0.64
CCDC28A-202ENST00000611852 DDX49Q9Y6V7 483 aaKnown RBP19.08■□□□□ 0.64
CCDC28A-202ENST00000611852 GCOM1H8Y6P7 765 aaPredicted RBP19.07■□□□□ 0.64
CCDC28A-202ENST00000611852 POLR2MP0CAP2 368 aa19.07■□□□□ 0.64
CCDC28A-202ENST00000611852 SCG2P13521 617 aa19.07■□□□□ 0.64
CCDC28A-202ENST00000611852 HOXA13P31271 388 aaPredicted RBP19.07■□□□□ 0.64
CCDC28A-202ENST00000611852 TYW1BQ6NUM6 668 aa19.07■□□□□ 0.64
CCDC28A-202ENST00000611852 CPLX2Q6PUV4 134 aaKnown RBP19.07■□□□□ 0.64
CCDC28A-202ENST00000611852 IL27Q8NEV9 243 aa19.07■□□□□ 0.64
CCDC28A-202ENST00000611852 MORC4Q8TE76 937 aa19.07■□□□□ 0.64
CCDC28A-202ENST00000611852 TAAR1Q96RJ0 339 aa19.07■□□□□ 0.64
CCDC28A-202ENST00000611852 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.07■□□□□ 0.64
CCDC28A-202ENST00000611852 BARHL2Q9NY43 387 aa19.07■□□□□ 0.64
CCDC28A-202ENST00000611852 CNPY2Q9Y2B0 182 aa19.07■□□□□ 0.64
CCDC28A-202ENST00000611852 LOC102724159A0A0B4J2E5 919 aa19.06■□□□□ 0.64
CCDC28A-202ENST00000611852 STXBP3O00186 592 aa19.06■□□□□ 0.64
CCDC28A-202ENST00000611852 GJB1P08034 283 aa19.06■□□□□ 0.64
CCDC28A-202ENST00000611852 AKAP17AQ02040 695 aaKnown RBP19.06■□□□□ 0.64
CCDC28A-202ENST00000611852 PWP2Q15269 919 aaKnown RBP19.06■□□□□ 0.64
CCDC28A-202ENST00000611852 NECAB1Q8N987 351 aa19.06■□□□□ 0.64
CCDC28A-202ENST00000611852 GTF3C6Q969F1 213 aa19.06■□□□□ 0.64
CCDC28A-202ENST00000611852 PSTPIP2Q9H939 334 aa19.06■□□□□ 0.64
CCDC28A-202ENST00000611852 POTEFA5A3E0 1075 aa19.05■□□□□ 0.64
CCDC28A-202ENST00000611852 MEIS2O14770 477 aa19.05■□□□□ 0.64
CCDC28A-202ENST00000611852 ZNF865P0CJ78 1059 aaPredicted RBP19.05■□□□□ 0.64
CCDC28A-202ENST00000611852 NAPAP54920 295 aa19.05■□□□□ 0.64
CCDC28A-202ENST00000611852 SOX10P56693 466 aa19.05■□□□□ 0.64
CCDC28A-202ENST00000611852 SSRP1Q08945 709 aaKnown RBP19.05■□□□□ 0.64
CCDC28A-202ENST00000611852 PPP1R18Q6NYC8 613 aa19.05■□□□□ 0.64
CCDC28A-202ENST00000611852 TRIM22Q8IYM9 498 aa19.05■□□□□ 0.64
CCDC28A-202ENST00000611852 DEFB118Q96PH6 123 aa19.05■□□□□ 0.64
CCDC28A-202ENST00000611852 RMDN3Q96TC7 470 aa19.05■□□□□ 0.64
CCDC28A-202ENST00000611852 ABHD16BQ9H3Z7 469 aa19.05■□□□□ 0.64
CCDC28A-202ENST00000611852 PIK3CDO00329 1044 aa19.05■□□□□ 0.64
CCDC28A-202ENST00000611852 ST18O60284 1047 aa19.05■□□□□ 0.64
CCDC28A-202ENST00000611852 CDKL5O76039 1030 aa19.05■□□□□ 0.64
CCDC28A-202ENST00000611852 CTDNEP1O95476 244 aa19.05■□□□□ 0.64
CCDC28A-202ENST00000611852 EDNRBP24530 442 aa19.05■□□□□ 0.64
CCDC28A-202ENST00000611852 CNGA1P29973 690 aa19.05■□□□□ 0.64
CCDC28A-202ENST00000611852 USP17L6PQ6QN14 398 aa19.05■□□□□ 0.64
CCDC28A-202ENST00000611852 NSUN6Q8TEA1 469 aaKnown RBP19.05■□□□□ 0.64
CCDC28A-202ENST00000611852 KATNBL1Q9H079 304 aa19.05■□□□□ 0.64
CCDC28A-202ENST00000611852 SEPT4O43236 478 aa19.04■□□□□ 0.64
CCDC28A-202ENST00000611852 SGPL1O95470 568 aa19.04■□□□□ 0.64
CCDC28A-202ENST00000611852 GJA8P48165 433 aa19.04■□□□□ 0.64
CCDC28A-202ENST00000611852 ACVR2BQ13705 512 aa19.04■□□□□ 0.64
CCDC28A-202ENST00000611852 FCHSD1Q86WN1 690 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms