RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 CEP131Q9UPN4 1083 aa6.59□□□□□ -1.35
LINC00540-201ENST00000611481 NRXN1Q9ULB1 1477 aa6.59□□□□□ -1.36
LINC00540-201ENST00000611481 E9PCH4 1651 aa6.58□□□□□ -1.36
LINC00540-201ENST00000611481 ANKRD30AQ9BXX3 1397 aa6.58□□□□□ -1.36
LINC00540-201ENST00000611481 PAPPAQ13219 1627 aa6.58□□□□□ -1.36
LINC00540-201ENST00000611481 CTCFP49711 727 aaPredicted RBP6.58□□□□□ -1.36
LINC00540-201ENST00000611481 ZC3H6P61129 1189 aaKnown RBP6.58□□□□□ -1.36
LINC00540-201ENST00000611481 SEPT6Q14141 434 aa6.58□□□□□ -1.36
LINC00540-201ENST00000611481 CCDC85BQ15834 202 aaPredicted RBP6.58□□□□□ -1.36
LINC00540-201ENST00000611481 DDB1Q16531 1140 aa6.58□□□□□ -1.36
LINC00540-201ENST00000611481 ZNF605Q86T29 641 aa6.58□□□□□ -1.36
LINC00540-201ENST00000611481 TSPYL5Q86VY4 417 aaPredicted RBP6.58□□□□□ -1.36
LINC00540-201ENST00000611481 MCATQ8IVS2 390 aaKnown RBP6.58□□□□□ -1.36
LINC00540-201ENST00000611481 SYTL4Q96C24 671 aaPredicted RBP6.58□□□□□ -1.36
LINC00540-201ENST00000611481 ASB16Q96NS5 453 aa6.58□□□□□ -1.36
LINC00540-201ENST00000611481 GPR62Q9BZJ7 368 aa6.58□□□□□ -1.36
LINC00540-201ENST00000611481 ZCCHC4Q9H5U6 513 aa6.58□□□□□ -1.36
LINC00540-201ENST00000611481 KCNH3Q9ULD8 1083 aa6.58□□□□□ -1.36
LINC00540-201ENST00000611481 THRAP3Q9Y2W1 955 aaKnown RBP6.58□□□□□ -1.36
LINC00540-201ENST00000611481 PCDHB5Q9Y5E4 795 aa6.58□□□□□ -1.36
LINC00540-201ENST00000611481 RGPD8O14715 1765 aaPredicted RBP6.58□□□□□ -1.36
LINC00540-201ENST00000611481 COL24A1Q17RW2 1714 aa6.58□□□□□ -1.36
LINC00540-201ENST00000611481 ZBTB7CA1YPR0 619 aa6.57□□□□□ -1.36
LINC00540-201ENST00000611481 LBX1P52954 281 aa6.57□□□□□ -1.36
LINC00540-201ENST00000611481 NR0B2Q15466 257 aa6.57□□□□□ -1.36
LINC00540-201ENST00000611481 SMC1BQ8NDV3 1235 aa6.57□□□□□ -1.36
LINC00540-201ENST00000611481 STK26Q9P289 416 aa6.57□□□□□ -1.36
LINC00540-201ENST00000611481 YBX2Q9Y2T7 364 aaKnown RBP6.57□□□□□ -1.36
LINC00540-201ENST00000611481 PHRF1Q9P1Y6 1649 aaKnown RBP6.57□□□□□ -1.36
LINC00540-201ENST00000611481 PLEKHH1Q9ULM0 1364 aa6.57□□□□□ -1.36
LINC00540-201ENST00000611481 PNPLA7Q6ZV29 1317 aa6.56□□□□□ -1.36
LINC00540-201ENST00000611481 MYOCOSA0A1B0GUC4 107 aa6.56□□□□□ -1.36
LINC00540-201ENST00000611481 BMP7P18075 431 aa6.56□□□□□ -1.36
LINC00540-201ENST00000611481 TMEM132EQ6IEE7 984 aa6.56□□□□□ -1.36
LINC00540-201ENST00000611481 AGMOQ6ZNB7 445 aa6.56□□□□□ -1.36
LINC00540-201ENST00000611481 SPPL2CQ8IUH8 684 aa6.56□□□□□ -1.36
LINC00540-201ENST00000611481 MARCH10Q8NA82 808 aaPredicted RBP6.56□□□□□ -1.36
LINC00540-201ENST00000611481 DTWD2Q8NBA8 298 aa6.56□□□□□ -1.36
LINC00540-201ENST00000611481 INTS4Q96HW7 963 aaKnown RBP6.56□□□□□ -1.36
LINC00540-201ENST00000611481 ARID3AQ99856 593 aa6.56□□□□□ -1.36
LINC00540-201ENST00000611481 MIR1-1HGQ9H1L0 117 aa6.56□□□□□ -1.36
LINC00540-201ENST00000611481 ADAM30Q9UKF2 790 aa6.56□□□□□ -1.36
LINC00540-201ENST00000611481 CNOT6Q9ULM6 557 aaKnown RBP6.56□□□□□ -1.36
LINC00540-201ENST00000611481 CD2APQ9Y5K6 639 aa6.56□□□□□ -1.36
LINC00540-201ENST00000611481 ALS2Q96Q42 1657 aa6.55□□□□□ -1.36
LINC00540-201ENST00000611481 IGSF1Q8N6C5 1336 aa6.55□□□□□ -1.36
LINC00540-201ENST00000611481 LRRC37A3O60309 1634 aa6.55□□□□□ -1.36
LINC00540-201ENST00000611481 TEX51A0A1B0GUA7 166 aa6.55□□□□□ -1.36
LINC00540-201ENST00000611481 BRD1O95696 1058 aa6.55□□□□□ -1.36
LINC00540-201ENST00000611481 EIF4BP23588 611 aaKnown RBP6.55□□□□□ -1.36
LINC00540-201ENST00000611481 SNX17Q15036 470 aa6.55□□□□□ -1.36
LINC00540-201ENST00000611481 TIGD5Q53EQ6 642 aa6.55□□□□□ -1.36
LINC00540-201ENST00000611481 ZNF385BQ569K4 471 aa6.55□□□□□ -1.36
LINC00540-201ENST00000611481 ZNF552Q9H707 407 aaPredicted RBP6.55□□□□□ -1.36
LINC00540-201ENST00000611481 TFCP2L1Q9NZI6 479 aa6.55□□□□□ -1.36
LINC00540-201ENST00000611481 PCDHA11Q9Y5I1 949 aa6.55□□□□□ -1.36
LINC00540-201ENST00000611481 DAPK1P53355 1430 aa6.55□□□□□ -1.36
LINC00540-201ENST00000611481 TRPM3Q9HCF6 1732 aaPredicted RBP6.55□□□□□ -1.36
LINC00540-201ENST00000611481 CRYBG1Q9Y4K1 1723 aa6.55□□□□□ -1.36
LINC00540-201ENST00000611481 PDIA4P13667 645 aaKnown RBP6.54□□□□□ -1.36
LINC00540-201ENST00000611481 PDE6BP35913 854 aa6.54□□□□□ -1.36
LINC00540-201ENST00000611481 CHRNEQ04844 493 aa6.54□□□□□ -1.36
LINC00540-201ENST00000611481 TSNAXIP1Q2TAA8 658 aa6.54□□□□□ -1.36
LINC00540-201ENST00000611481 TCERG1LQ5VWI1 586 aa6.54□□□□□ -1.36
LINC00540-201ENST00000611481 PPP1R13LQ8WUF5 828 aa6.54□□□□□ -1.36
LINC00540-201ENST00000611481 CYB5D2Q8WUJ1 264 aa6.54□□□□□ -1.36
LINC00540-201ENST00000611481 ACSF2Q96CM8 615 aaPredicted RBP6.54□□□□□ -1.36
LINC00540-201ENST00000611481 GPRASP1Q5JY77 1395 aa6.54□□□□□ -1.36
LINC00540-201ENST00000611481 BCL9O00512 1426 aa6.53□□□□□ -1.36
LINC00540-201ENST00000611481 RFXAPO00287 272 aa6.53□□□□□ -1.36
LINC00540-201ENST00000611481 FOXD2O60548 495 aaPredicted RBP6.53□□□□□ -1.36
LINC00540-201ENST00000611481 LDHBP07195 334 aaKnown RBP6.53□□□□□ -1.36
LINC00540-201ENST00000611481 GNA15P30679 374 aa6.53□□□□□ -1.36
LINC00540-201ENST00000611481 LIG3P49916 1009 aa6.53□□□□□ -1.36
LINC00540-201ENST00000611481 DUSP4Q13115 394 aa6.53□□□□□ -1.36
LINC00540-201ENST00000611481 TMEM151BQ8IW70 566 aa6.53□□□□□ -1.36
LINC00540-201ENST00000611481 KCNC2Q96PR1 638 aa6.53□□□□□ -1.36
LINC00540-201ENST00000611481 HIRIP3Q9BW71 556 aaPredicted RBP6.53□□□□□ -1.36
LINC00540-201ENST00000611481 GPR160Q9UJ42 338 aa6.53□□□□□ -1.36
LINC00540-201ENST00000611481 KCTD3Q9Y597 815 aa6.53□□□□□ -1.36
LINC00540-201ENST00000611481 CLTCL1P53675 1640 aa6.53□□□□□ -1.36
LINC00540-201ENST00000611481 ANKRD50Q9ULJ7 1429 aa6.52□□□□□ -1.37
LINC00540-201ENST00000611481 KCPQ6ZWJ8 1503 aa6.52□□□□□ -1.37
LINC00540-201ENST00000611481 P4HBP07237 508 aaKnown RBP6.52□□□□□ -1.37
LINC00540-201ENST00000611481 RPL6Q02878 288 aaKnown RBP6.52□□□□□ -1.37
LINC00540-201ENST00000611481 MAP3K11Q16584 847 aa6.52□□□□□ -1.37
LINC00540-201ENST00000611481 DIEXFQ68CQ4 756 aaKnown RBP6.52□□□□□ -1.37
LINC00540-201ENST00000611481 ANKS4BQ8N8V4 417 aa6.52□□□□□ -1.37
LINC00540-201ENST00000611481 RNF141Q8WVD5 230 aa6.52□□□□□ -1.37
LINC00540-201ENST00000611481 GCM1Q9NP62 436 aa6.52□□□□□ -1.37
LINC00540-201ENST00000611481 QSER1Q2KHR3 1735 aa6.52□□□□□ -1.37
LINC00540-201ENST00000611481 IFT172Q9UG01 1749 aa6.52□□□□□ -1.37
LINC00540-201ENST00000611481 KDM2BQ8NHM5 1336 aa6.51□□□□□ -1.37
LINC00540-201ENST00000611481 CICQ96RK0 1608 aaPredicted RBP6.51□□□□□ -1.37
LINC00540-201ENST00000611481 A0A0G2JLL6 359 aaPredicted RBP6.51□□□□□ -1.37
LINC00540-201ENST00000611481 HSPA8P11142 646 aaKnown RBP6.51□□□□□ -1.37
LINC00540-201ENST00000611481 YARSP54577 528 aaKnown RBP6.51□□□□□ -1.37
LINC00540-201ENST00000611481 SGPP1Q9BX95 441 aa6.51□□□□□ -1.37
LINC00540-201ENST00000611481 AKAP12Q02952 1782 aa6.51□□□□□ -1.37
LINC00540-201ENST00000611481 CRB1P82279 1406 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms