RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 RAD51AP2Q09MP3 1159 aa22.38■■□□□ 1.17
UPF1-207ENST00000599848 MYL10Q9BUA6 226 aa22.38■■□□□ 1.17
UPF1-207ENST00000599848 CASQ2O14958 399 aaPredicted RBP22.37■■□□□ 1.17
UPF1-207ENST00000599848 PRPF38AQ8NAV1 312 aaKnown RBP22.37■■□□□ 1.17
UPF1-207ENST00000599848 KRT12Q99456 494 aa22.37■■□□□ 1.17
UPF1-207ENST00000599848 LRRC4Q9HBW1 653 aa22.37■■□□□ 1.17
UPF1-207ENST00000599848 GTPBP6O43824 516 aaPredicted RBP22.37■■□□□ 1.17
UPF1-207ENST00000599848 MMP10P09238 476 aa22.37■■□□□ 1.17
UPF1-207ENST00000599848 ARHGAP4P98171 946 aa22.37■■□□□ 1.17
UPF1-207ENST00000599848 RDH13Q8NBN7 331 aa22.37■■□□□ 1.17
UPF1-207ENST00000599848 NCOA5Q9HCD5 579 aaKnown RBP22.37■■□□□ 1.17
UPF1-207ENST00000599848 KCNJ14Q9UNX9 436 aa22.37■■□□□ 1.17
UPF1-207ENST00000599848 DBNDD1Q9H9R9 158 aa22.37■■□□□ 1.17
UPF1-207ENST00000599848 KMT5AQ9NQR1 393 aa22.37■■□□□ 1.17
UPF1-207ENST00000599848 GKAP1Q5VSY0 366 aaPredicted RBP22.37■■□□□ 1.17
UPF1-207ENST00000599848 URGCPQ8TCY9 931 aa22.37■■□□□ 1.17
UPF1-207ENST00000599848 VPS37BQ9H9H4 285 aa22.37■■□□□ 1.17
UPF1-207ENST00000599848 SSH3Q8TE77 659 aa22.36■■□□□ 1.17
UPF1-207ENST00000599848 DISC1Q9NRI5 854 aa22.36■■□□□ 1.17
UPF1-207ENST00000599848 NFE2L3Q9Y4A8 694 aa22.36■■□□□ 1.17
UPF1-207ENST00000599848 UGGT1Q9NYU2 1555 aa22.36■■□□□ 1.17
UPF1-207ENST00000599848 RAD17O75943 681 aa22.36■■□□□ 1.17
UPF1-207ENST00000599848 U2AF1L4Q8WU68 220 aaKnown RBP22.36■■□□□ 1.17
UPF1-207ENST00000599848 SKA2Q8WVK7 121 aaPredicted RBP22.36■■□□□ 1.17
UPF1-207ENST00000599848 MAPK8IP1Q9UQF2 711 aa22.36■■□□□ 1.17
UPF1-207ENST00000599848 DLATP10515 647 aaKnown RBP22.36■■□□□ 1.17
UPF1-207ENST00000599848 BEND3Q5T5X7 828 aa22.36■■□□□ 1.17
UPF1-207ENST00000599848 SLFN12LQ6IEE8 588 aa22.36■■□□□ 1.17
UPF1-207ENST00000599848 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.36■■□□□ 1.174e-7■■■□□ 18.4
UPF1-207ENST00000599848 TAB2Q9NYJ8 693 aa22.36■■□□□ 1.17
UPF1-207ENST00000599848 AATKQ6ZMQ8 1374 aa22.36■■□□□ 1.17
UPF1-207ENST00000599848 TECP42680 631 aa22.35■■□□□ 1.17
UPF1-207ENST00000599848 RECQLP46063 649 aaPredicted RBP22.35■■□□□ 1.17
UPF1-207ENST00000599848 BSPRYQ5W0U4 402 aa22.35■■□□□ 1.17
UPF1-207ENST00000599848 ANGPTL3Q9Y5C1 460 aa22.35■■□□□ 1.17
UPF1-207ENST00000599848 RNF219Q5W0B1 726 aaPredicted RBP22.35■■□□□ 1.17
UPF1-207ENST00000599848 TMEM179Q6ZVK1 233 aa22.35■■□□□ 1.17
UPF1-207ENST00000599848 CTAGE3PQ8IX95 158 aa22.35■■□□□ 1.17
UPF1-207ENST00000599848 GANCQ8TET4 914 aa22.35■■□□□ 1.17
UPF1-207ENST00000599848 PPFIA4O75335 1185 aa22.35■■□□□ 1.17
UPF1-207ENST00000599848 ADGRL2O95490 1459 aa22.35■■□□□ 1.17
UPF1-207ENST00000599848 IRX4P78413 519 aa22.35■■□□□ 1.17
UPF1-207ENST00000599848 RBBP5Q15291 538 aaKnown RBP22.35■■□□□ 1.17
UPF1-207ENST00000599848 CDC37Q16543 378 aaPredicted RBP22.35■■□□□ 1.17
UPF1-207ENST00000599848 B4GALNT4Q76KP1 1039 aa22.35■■□□□ 1.17
UPF1-207ENST00000599848 HVCN1Q96D96 273 aa22.35■■□□□ 1.17
UPF1-207ENST00000599848 TNFAIP2Q03169 654 aa22.34■■□□□ 1.17
UPF1-207ENST00000599848 SEPT2Q15019 361 aa22.34■■□□□ 1.17
UPF1-207ENST00000599848 HSPA8P11142 646 aaKnown RBP22.34■■□□□ 1.17
UPF1-207ENST00000599848 ARL4AP40617 200 aa22.34■■□□□ 1.17
UPF1-207ENST00000599848 TOPORSQ9NS56 1045 aaPredicted RBP22.34■■□□□ 1.17
UPF1-207ENST00000599848 GSTA1P08263 222 aa22.34■■□□□ 1.17
UPF1-207ENST00000599848 GSTA2P09210 222 aa22.34■■□□□ 1.17
UPF1-207ENST00000599848 RRAGAQ7L523 313 aa22.34■■□□□ 1.17
UPF1-207ENST00000599848 CEP170P1Q96L14 293 aa22.34■■□□□ 1.17
UPF1-207ENST00000599848 TNNQ9UQP3 1299 aa22.34■■□□□ 1.17
UPF1-207ENST00000599848 ZBTB1Q9Y2K1 713 aa22.34■■□□□ 1.17
UPF1-207ENST00000599848 CEP170Q5SW79 1584 aa22.34■■□□□ 1.17
UPF1-207ENST00000599848 SIX6OS1Q8N1H7 587 aa22.34■■□□□ 1.17
UPF1-207ENST00000599848 KDM5CP41229 1560 aa22.34■■□□□ 1.17
UPF1-207ENST00000599848 LONRF2Q1L5Z9 754 aa22.33■■□□□ 1.17
UPF1-207ENST00000599848 ARL13BQ3SXY8 428 aa22.33■■□□□ 1.17
UPF1-207ENST00000599848 MYSM1Q5VVJ2 828 aa22.33■■□□□ 1.17
UPF1-207ENST00000599848 PPM1KQ8N3J5 372 aa22.33■■□□□ 1.17
UPF1-207ENST00000599848 IFIH1Q9BYX4 1025 aaKnown RBP22.33■■□□□ 1.17
UPF1-207ENST00000599848 VCX3AQ9NNX9 186 aa22.33■■□□□ 1.17
UPF1-207ENST00000599848 RHOXF2BP0C7M4 288 aa22.33■■□□□ 1.17
UPF1-207ENST00000599848 LRMPQ12912 555 aa22.33■■□□□ 1.17
UPF1-207ENST00000599848 RHOXF2Q9BQY4 288 aa22.33■■□□□ 1.17
UPF1-207ENST00000599848 RNF26Q9BY78 433 aaPredicted RBP22.33■■□□□ 1.17
UPF1-207ENST00000599848 IRAK4Q9NWZ3 460 aa22.33■■□□□ 1.17
UPF1-207ENST00000599848 PALLDQ8WX93 1383 aa22.33■■□□□ 1.17
UPF1-207ENST00000599848 TBC1D8O95759 1140 aa22.33■■□□□ 1.17
UPF1-207ENST00000599848 PODNQ7Z5L7 613 aa22.33■■□□□ 1.17
UPF1-207ENST00000599848 TRIM58Q8NG06 486 aa22.33■■□□□ 1.17
UPF1-207ENST00000599848 MCUR1Q96AQ8 359 aa22.33■■□□□ 1.17
UPF1-207ENST00000599848 MYL1P05976 194 aa22.33■■□□□ 1.16
UPF1-207ENST00000599848 TROVE2P10155 538 aaKnown RBP eCLIP22.33■■□□□ 1.16
UPF1-207ENST00000599848 ATP11AP98196 1134 aa22.33■■□□□ 1.16
UPF1-207ENST00000599848 CEP85LQ5SZL2 805 aa22.33■■□□□ 1.16
UPF1-207ENST00000599848 ANKRD20A3Q5VUR7 823 aa22.33■■□□□ 1.16
UPF1-207ENST00000599848 GREM2Q9H772 168 aa22.33■■□□□ 1.16
UPF1-207ENST00000599848 JAK3P52333 1124 aa22.33■■□□□ 1.16
UPF1-207ENST00000599848 BFSP1Q12934 665 aa22.32■■□□□ 1.16
UPF1-207ENST00000599848 PPFIA1Q13136 1202 aa22.32■■□□□ 1.16
UPF1-207ENST00000599848 DSTYKQ6XUX3 929 aa22.32■■□□□ 1.16
UPF1-207ENST00000599848 SDR42E1Q8WUS8 393 aa22.32■■□□□ 1.16
UPF1-207ENST00000599848 SLC38A10Q9HBR0 1119 aa22.32■■□□□ 1.16
UPF1-207ENST00000599848 AFF2P51816 1311 aa22.32■■□□□ 1.16
UPF1-207ENST00000599848 KIF21AQ7Z4S6 1674 aa22.32■■□□□ 1.16
UPF1-207ENST00000599848 ADAM9Q13443 819 aa22.32■■□□□ 1.16
UPF1-207ENST00000599848 KDM5DQ9BY66 1539 aa22.32■■□□□ 1.16
UPF1-207ENST00000599848 LDHAP00338 332 aaKnown RBP22.32■■□□□ 1.16
UPF1-207ENST00000599848 MYL3P08590 195 aa22.32■■□□□ 1.16
UPF1-207ENST00000599848 MYL7Q01449 175 aa22.32■■□□□ 1.16
UPF1-207ENST00000599848 ADALQ6DHV7 355 aa22.32■■□□□ 1.16
UPF1-207ENST00000599848 SYT10Q6XYQ8 523 aa22.32■■□□□ 1.16
UPF1-207ENST00000599848 FAM149B1Q96BN6 582 aa22.32■■□□□ 1.16
UPF1-207ENST00000599848 MYOM2P54296 1465 aa22.31■■□□□ 1.16
UPF1-207ENST00000599848 MNAT1P51948 309 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms