RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 PMS1P54277 932 aaKnown RBP16.3■□□□□ 0.2
VRK3-217ENST00000599538 CXCL9Q07325 125 aa16.3■□□□□ 0.2
VRK3-217ENST00000599538 TBX2Q13207 712 aaPredicted RBP16.3■□□□□ 0.2
VRK3-217ENST00000599538 GRB10Q13322 594 aa16.3■□□□□ 0.2
VRK3-217ENST00000599538 CCAR2Q8N163 923 aaKnown RBP16.3■□□□□ 0.2
VRK3-217ENST00000599538 OGFOD1Q8N543 542 aa16.3■□□□□ 0.2
VRK3-217ENST00000599538 GMCL1P1Q8NEA9 526 aa16.3■□□□□ 0.2
VRK3-217ENST00000599538 NELFBQ8WX92 580 aa16.3■□□□□ 0.2
VRK3-217ENST00000599538 HAS1Q92839 578 aa16.3■□□□□ 0.2
VRK3-217ENST00000599538 TMOD2Q9NZR1 351 aa16.3■□□□□ 0.2
VRK3-217ENST00000599538 MEIS2O14770 477 aa16.29■□□□□ 0.2
VRK3-217ENST00000599538 TNNT1P13805 278 aa16.29■□□□□ 0.2
VRK3-217ENST00000599538 PAK1Q13153 545 aa16.29■□□□□ 0.2
VRK3-217ENST00000599538 USH1GQ495M9 461 aa16.29■□□□□ 0.2
VRK3-217ENST00000599538 SPDYE2Q495Y8 402 aa16.29■□□□□ 0.2
VRK3-217ENST00000599538 MIGA2Q7L4E1 593 aa16.29■□□□□ 0.2
VRK3-217ENST00000599538 SLC16A10Q8TF71 515 aa16.29■□□□□ 0.2
VRK3-217ENST00000599538 FAM151AQ8WW52 585 aa16.29■□□□□ 0.2
VRK3-217ENST00000599538 TSC1Q92574 1164 aa16.29■□□□□ 0.2
VRK3-217ENST00000599538 GMCL1Q96IK5 515 aa16.29■□□□□ 0.2
VRK3-217ENST00000599538 PNMA5Q96PV4 448 aa16.29■□□□□ 0.2
VRK3-217ENST00000599538 LRWD1Q9UFC0 647 aa16.29■□□□□ 0.2
VRK3-217ENST00000599538 ZNRF3Q9ULT6 936 aa16.29■□□□□ 0.2
VRK3-217ENST00000599538 COL2A1P02458 1487 aaPredicted RBP16.29■□□□□ 0.2
VRK3-217ENST00000599538 FXR2P51116 673 aaKnown RBP eCLIP16.28■□□□□ 0.2
VRK3-217ENST00000599538 IKQ13123 557 aaPredicted RBP16.28■□□□□ 0.2
VRK3-217ENST00000599538 ORC2Q13416 577 aaPredicted RBP16.28■□□□□ 0.2
VRK3-217ENST00000599538 GRIPAP1Q4V328 841 aa16.28■□□□□ 0.2
VRK3-217ENST00000599538 PPP4R3AQ6IN85 833 aa16.28■□□□□ 0.2
VRK3-217ENST00000599538 TRIM9Q9C026 710 aa16.28■□□□□ 0.2
VRK3-217ENST00000599538 TMX1Q9H3N1 280 aa16.28■□□□□ 0.2
VRK3-217ENST00000599538 BLOC1S4Q9NUP1 217 aa16.28■□□□□ 0.2
VRK3-217ENST00000599538 RMND1Q9NWS8 449 aa16.28■□□□□ 0.2
VRK3-217ENST00000599538 ADD3Q9UEY8 706 aaKnown RBP16.28■□□□□ 0.2
VRK3-217ENST00000599538 DDX25Q9UHL0 483 aaKnown RBP16.28■□□□□ 0.2
VRK3-217ENST00000599538 RWDD2AQ9UIY3 292 aa16.28■□□□□ 0.2
VRK3-217ENST00000599538 HDAC9Q9UKV0 1011 aa16.28■□□□□ 0.2
VRK3-217ENST00000599538 KIF13BQ9NQT8 1826 aa16.28■□□□□ 0.2
VRK3-217ENST00000599538 BMP3P12645 472 aa16.28■□□□□ 0.2
VRK3-217ENST00000599538 ADKP55263 362 aaKnown RBP16.28■□□□□ 0.2
VRK3-217ENST00000599538 NBPF9Q3BBW0 867 aa16.28■□□□□ 0.2
VRK3-217ENST00000599538 SPECC1LQ69YQ0 1117 aa16.28■□□□□ 0.2
VRK3-217ENST00000599538 KCNK18Q7Z418 384 aa16.28■□□□□ 0.2
VRK3-217ENST00000599538 TMEM139Q8IV31 216 aa16.28■□□□□ 0.2
VRK3-217ENST00000599538 NIM1KQ8IY84 436 aa16.28■□□□□ 0.2
VRK3-217ENST00000599538 ADSSL1Q8N142 457 aa16.28■□□□□ 0.2
VRK3-217ENST00000599538 MYRIPQ8NFW9 859 aa16.28■□□□□ 0.2
VRK3-217ENST00000599538 HPS3Q969F9 1004 aa16.28■□□□□ 0.2
VRK3-217ENST00000599538 HERC5Q9UII4 1024 aaKnown RBP16.28■□□□□ 0.2
VRK3-217ENST00000599538 RHOBTB3O94955 611 aa16.27■□□□□ 0.2
VRK3-217ENST00000599538 CCT6AP40227 531 aaKnown RBP16.27■□□□□ 0.2
VRK3-217ENST00000599538 KCNB1Q14721 858 aa16.27■□□□□ 0.2
VRK3-217ENST00000599538 ECM1Q16610 540 aa16.27■□□□□ 0.2
VRK3-217ENST00000599538 SYDE2Q5VT97 1194 aa16.27■□□□□ 0.2
VRK3-217ENST00000599538 CCDC84Q86UT8 332 aaPredicted RBP16.27■□□□□ 0.2
VRK3-217ENST00000599538 PRIMPOLQ96LW4 560 aa16.27■□□□□ 0.2
VRK3-217ENST00000599538 OPLAHO14841 1288 aa16.27■□□□□ 0.19
VRK3-217ENST00000599538 MCM6Q14566 821 aa16.27■□□□□ 0.19
VRK3-217ENST00000599538 NYAP1Q6ZVC0 841 aa16.27■□□□□ 0.19
VRK3-217ENST00000599538 TC2NQ8N9U0 490 aa16.27■□□□□ 0.19
VRK3-217ENST00000599538 ANO3Q9BYT9 981 aa16.27■□□□□ 0.19
VRK3-217ENST00000599538 PIM2Q9P1W9 311 aa16.27■□□□□ 0.19
VRK3-217ENST00000599538 WNT10BO00744 389 aa16.26■□□□□ 0.19
VRK3-217ENST00000599538 RIOK3O14730 519 aaKnown RBP16.26■□□□□ 0.19
VRK3-217ENST00000599538 EGFRP00533 1210 aa16.26■□□□□ 0.19
VRK3-217ENST00000599538 FCER1AP12319 257 aa16.26■□□□□ 0.19
VRK3-217ENST00000599538 STK4Q13043 487 aa16.26■□□□□ 0.19
VRK3-217ENST00000599538 KRT31Q15323 416 aa16.26■□□□□ 0.19
VRK3-217ENST00000599538 CEP135Q66GS9 1140 aa16.26■□□□□ 0.19
VRK3-217ENST00000599538 IRF2BP1Q8IU81 584 aa16.26■□□□□ 0.19
VRK3-217ENST00000599538 GIMAP8Q8ND71 665 aaPredicted RBP16.26■□□□□ 0.19
VRK3-217ENST00000599538 AMNQ9BXJ7 453 aa16.26■□□□□ 0.19
VRK3-217ENST00000599538 CUEDC2Q9H467 287 aa16.26■□□□□ 0.19
VRK3-217ENST00000599538 PBX1P40424 430 aa16.25■□□□□ 0.19
VRK3-217ENST00000599538 ZYXQ15942 572 aaKnown RBP16.25■□□□□ 0.19
VRK3-217ENST00000599538 FBXO11Q86XK2 927 aa16.25■□□□□ 0.19
VRK3-217ENST00000599538 CREBRFQ8IUR6 639 aa16.25■□□□□ 0.19
VRK3-217ENST00000599538 SNX29Q8TEQ0 813 aa16.25■□□□□ 0.19
VRK3-217ENST00000599538 EEF2KMTQ96G04 330 aa16.25■□□□□ 0.19
VRK3-217ENST00000599538 CALML4Q96GE6 196 aa16.25■□□□□ 0.19
VRK3-217ENST00000599538 C7orf25Q9BPX7 421 aa16.25■□□□□ 0.19
VRK3-217ENST00000599538 GLIS2Q9BZE0 524 aaPredicted RBP16.25■□□□□ 0.19
VRK3-217ENST00000599538 PPP1R1BQ9UD71 204 aaPredicted RBP16.25■□□□□ 0.19
VRK3-217ENST00000599538 ZBTB21Q9ULJ3 1066 aa16.25■□□□□ 0.19
VRK3-217ENST00000599538 PRR12Q9ULL5 1215 aa16.25■□□□□ 0.19
VRK3-217ENST00000599538 MYMKA6NI61 221 aa16.25■□□□□ 0.19
VRK3-217ENST00000599538 MYL1P05976 194 aa16.25■□□□□ 0.19
VRK3-217ENST00000599538 ASIC1P78348 528 aa16.25■□□□□ 0.19
VRK3-217ENST00000599538 TMEM266Q2M3C6 531 aa16.25■□□□□ 0.19
VRK3-217ENST00000599538 AGBL3Q8NEM8 1001 aa16.25■□□□□ 0.19
VRK3-217ENST00000599538 ZNF592Q92610 1267 aa16.25■□□□□ 0.19
VRK3-217ENST00000599538 PPP1R13BQ96KQ4 1090 aa16.25■□□□□ 0.19
VRK3-217ENST00000599538 KCND1Q9NSA2 647 aa16.25■□□□□ 0.19
VRK3-217ENST00000599538 PGAP2Q9UHJ9 254 aa16.25■□□□□ 0.19
VRK3-217ENST00000599538 PDE4DQ08499 809 aa16.24■□□□□ 0.19
VRK3-217ENST00000599538 PDIA5Q14554 519 aa16.24■□□□□ 0.19
VRK3-217ENST00000599538 PTPN14Q15678 1187 aa16.24■□□□□ 0.19
VRK3-217ENST00000599538 FAM83BQ5T0W9 1011 aa16.24■□□□□ 0.19
VRK3-217ENST00000599538 BTNL9Q6UXG8 535 aa16.24■□□□□ 0.19
VRK3-217ENST00000599538 CRYGNQ8WXF5 182 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms