RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 PDGFCQ9NRA1 345 aa16.51■□□□□ 0.23
SHKBP1-218ENST00000598907 ZDBF2Q9HCK1 2354 aa16.51■□□□□ 0.23
SHKBP1-218ENST00000598907 SIP14410 1827 aa16.5■□□□□ 0.23
SHKBP1-218ENST00000598907 GFRA3O60609 400 aa16.5■□□□□ 0.23
SHKBP1-218ENST00000598907 SUPT20HL2P0C7V6 817 aa16.5■□□□□ 0.23
SHKBP1-218ENST00000598907 GSPT1P15170 499 aaKnown RBP16.5■□□□□ 0.23
SHKBP1-218ENST00000598907 ZP2Q05996 745 aa16.5■□□□□ 0.23
SHKBP1-218ENST00000598907 RETREG2Q8NC44 543 aa16.5■□□□□ 0.23
SHKBP1-218ENST00000598907 KIFC2Q96AC6 838 aa16.5■□□□□ 0.23
SHKBP1-218ENST00000598907 HAUS7Q99871 368 aa16.5■□□□□ 0.23
SHKBP1-218ENST00000598907 FAM86C1Q9NVL1 165 aa16.5■□□□□ 0.23
SHKBP1-218ENST00000598907 BAZ2AQ9UIF9 1905 aaKnown RBP16.5■□□□□ 0.23
SHKBP1-218ENST00000598907 RBAK-RBAKDNI3L0D1 243 aa16.49■□□□□ 0.23
SHKBP1-218ENST00000598907 ZBED4O75132 1171 aa16.49■□□□□ 0.23
SHKBP1-218ENST00000598907 IQCF3P0C7M6 154 aa16.49■□□□□ 0.23
SHKBP1-218ENST00000598907 CDK8P49336 464 aa16.49■□□□□ 0.23
SHKBP1-218ENST00000598907 PTPN5P54829 565 aa16.49■□□□□ 0.23
SHKBP1-218ENST00000598907 WDR5P61964 334 aaKnown RBP16.49■□□□□ 0.23
SHKBP1-218ENST00000598907 DEFB103AP81534 67 aa16.49■□□□□ 0.23
SHKBP1-218ENST00000598907 CCDC17Q96LX7 622 aa16.49■□□□□ 0.23
SHKBP1-218ENST00000598907 CFAP54Q96N23 3096 aa16.49■□□□□ 0.23
SHKBP1-218ENST00000598907 TGS1Q96RS0 853 aaKnown RBP16.49■□□□□ 0.23
SHKBP1-218ENST00000598907 BOLA2Q9H3K6 86 aa16.49■□□□□ 0.23
SHKBP1-218ENST00000598907 KANSL2Q9H9L4 492 aa16.49■□□□□ 0.23
SHKBP1-218ENST00000598907 FBXO40Q9UH90 709 aa16.49■□□□□ 0.23
SHKBP1-218ENST00000598907 MUTYHQ9UIF7 546 aa16.49■□□□□ 0.23
SHKBP1-218ENST00000598907 PRKAB2O43741 272 aa16.48■□□□□ 0.23
SHKBP1-218ENST00000598907 BAIAP3O94812 1187 aa16.48■□□□□ 0.23
SHKBP1-218ENST00000598907 MYL3P08590 195 aa16.48■□□□□ 0.23
SHKBP1-218ENST00000598907 PDE6AP16499 860 aa16.48■□□□□ 0.23
SHKBP1-218ENST00000598907 PUS10Q3MIT2 529 aaKnown RBP16.48■□□□□ 0.23
SHKBP1-218ENST00000598907 BMP2KLQ5H9B9 411 aa16.48■□□□□ 0.23
SHKBP1-218ENST00000598907 IER5LQ5T953 404 aa16.48■□□□□ 0.23
SHKBP1-218ENST00000598907 FAM117BQ6P1L5 589 aa16.48■□□□□ 0.23
SHKBP1-218ENST00000598907 ARMT1Q9H993 441 aa16.48■□□□□ 0.23
SHKBP1-218ENST00000598907 TET1Q8NFU7 2136 aa16.48■□□□□ 0.23
SHKBP1-218ENST00000598907 SOWAHBA6NEL2 793 aa16.47■□□□□ 0.23
SHKBP1-218ENST00000598907 IRS1P35568 1242 aa16.47■□□□□ 0.23
SHKBP1-218ENST00000598907 FOXK2Q01167 660 aa16.47■□□□□ 0.23
SHKBP1-218ENST00000598907 SLC9C2Q5TAH2 1124 aa16.47■□□□□ 0.23
SHKBP1-218ENST00000598907 PRPF38AQ8NAV1 312 aaKnown RBP16.47■□□□□ 0.23
SHKBP1-218ENST00000598907 NEK9Q8TD19 979 aa16.47■□□□□ 0.23
SHKBP1-218ENST00000598907 NOD1Q9Y239 953 aa16.47■□□□□ 0.23
SHKBP1-218ENST00000598907 ZNF532Q9HCE3 1301 aa16.46■□□□□ 0.23
SHKBP1-218ENST00000598907 LINC01553A4QN01 128 aa16.46■□□□□ 0.23
SHKBP1-218ENST00000598907 ATP2A1O14983 1001 aa16.46■□□□□ 0.23
SHKBP1-218ENST00000598907 NDUFB10O96000 172 aa16.46■□□□□ 0.23
SHKBP1-218ENST00000598907 CHMP4BP1P59074 171 aa16.46■□□□□ 0.23
SHKBP1-218ENST00000598907 ERVK-21P61565 698 aa16.46■□□□□ 0.23
SHKBP1-218ENST00000598907 FAM133AQ8N9E0 248 aa16.46■□□□□ 0.23
SHKBP1-218ENST00000598907 CHST13Q8NET6 341 aa16.46■□□□□ 0.23
SHKBP1-218ENST00000598907 FBXO22Q8NEZ5 403 aa16.46■□□□□ 0.23
SHKBP1-218ENST00000598907 MYH7P12883 1935 aa16.46■□□□□ 0.23
SHKBP1-218ENST00000598907 ASB14A6NK59 587 aa16.45■□□□□ 0.22
SHKBP1-218ENST00000598907 PITPNM1O00562 1244 aa16.45■□□□□ 0.22
SHKBP1-218ENST00000598907 SDSP20132 328 aa16.45■□□□□ 0.22
SHKBP1-218ENST00000598907 PURAQ00577 322 aaKnown RBP16.45■□□□□ 0.22
SHKBP1-218ENST00000598907 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.45■□□□□ 0.22
SHKBP1-218ENST00000598907 ADHFE1Q8IWW8 467 aa16.45■□□□□ 0.22
SHKBP1-218ENST00000598907 C17orf80Q9BSJ5 609 aa16.45■□□□□ 0.22
SHKBP1-218ENST00000598907 ACAD9Q9H845 621 aa16.45■□□□□ 0.22
SHKBP1-218ENST00000598907 SLC38A10Q9HBR0 1119 aa16.45■□□□□ 0.22
SHKBP1-218ENST00000598907 A1CFQ9NQ94 594 aaKnown RBP16.45■□□□□ 0.22
SHKBP1-218ENST00000598907 POLR3EQ9NVU0 708 aa16.45■□□□□ 0.22
SHKBP1-218ENST00000598907 ISY1Q9ULR0 285 aaKnown RBP16.45■□□□□ 0.22
SHKBP1-218ENST00000598907 FAM50BQ9Y247 325 aa16.45■□□□□ 0.22
SHKBP1-218ENST00000598907 F5H6K3 240 aa16.44■□□□□ 0.22
SHKBP1-218ENST00000598907 KLRC3Q07444 240 aa16.44■□□□□ 0.22
SHKBP1-218ENST00000598907 BFSP2Q13515 415 aa16.44■□□□□ 0.22
SHKBP1-218ENST00000598907 CLUL1Q15846 466 aa16.44■□□□□ 0.22
SHKBP1-218ENST00000598907 NBPF20Q3BBV1 942 aa16.44■□□□□ 0.22
SHKBP1-218ENST00000598907 TAPT1Q6NXT6 567 aa16.44■□□□□ 0.22
SHKBP1-218ENST00000598907 KIAA1211Q6ZU35 1233 aa16.44■□□□□ 0.22
SHKBP1-218ENST00000598907 C16orf86Q6ZW13 317 aa16.44■□□□□ 0.22
SHKBP1-218ENST00000598907 AMOTL1Q8IY63 956 aa16.44■□□□□ 0.22
SHKBP1-218ENST00000598907 STK11IPQ8N1F8 1099 aa16.44■□□□□ 0.22
SHKBP1-218ENST00000598907 EVI5LQ96CN4 794 aa16.44■□□□□ 0.22
SHKBP1-218ENST00000598907 UPF3BQ9BZI7 483 aaKnown RBP16.44■□□□□ 0.22
SHKBP1-218ENST00000598907 GPHNQ9NQX3 736 aaPredicted RBP16.44■□□□□ 0.22
SHKBP1-218ENST00000598907 RNF146Q9NTX7 359 aa16.44■□□□□ 0.22
SHKBP1-218ENST00000598907 PAG1Q9NWQ8 432 aa16.44■□□□□ 0.22
SHKBP1-218ENST00000598907 PRKAG3Q9UGI9 489 aa16.44■□□□□ 0.22
SHKBP1-218ENST00000598907 C19orf67A6NJJ6 358 aa16.43■□□□□ 0.22
SHKBP1-218ENST00000598907 MBD4O95243 580 aa16.43■□□□□ 0.22
SHKBP1-218ENST00000598907 GJB5O95377 273 aa16.43■□□□□ 0.22
SHKBP1-218ENST00000598907 TCF15Q12870 199 aa16.43■□□□□ 0.22
SHKBP1-218ENST00000598907 C12orf60Q5U649 245 aa16.43■□□□□ 0.22
SHKBP1-218ENST00000598907 IQSEC1Q6DN90 963 aa16.43■□□□□ 0.22
SHKBP1-218ENST00000598907 TMED8Q6PL24 325 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-218ENST00000598907 TICAM2Q86XR7 235 aa16.43■□□□□ 0.22
SHKBP1-218ENST00000598907 DNAJC2Q99543 621 aaKnown RBP16.43■□□□□ 0.22
SHKBP1-218ENST00000598907 RAD9AQ99638 391 aa16.43■□□□□ 0.22
SHKBP1-218ENST00000598907 MTG1Q9BT17 334 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-218ENST00000598907 ZFHX2Q9C0A1 2572 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-218ENST00000598907 GREB1LQ9C091 1923 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-218ENST00000598907 USP17L12C9JPN9 530 aa16.42■□□□□ 0.22
SHKBP1-218ENST00000598907 USP17L21D6R901 530 aa16.42■□□□□ 0.22
SHKBP1-218ENST00000598907 GOLIM4O00461 696 aa16.42■□□□□ 0.22
SHKBP1-218ENST00000598907 TTF1Q15361 905 aaPredicted RBP16.42■□□□□ 0.22
SHKBP1-218ENST00000598907 SLFNL1Q499Z3 407 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms