RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 PCDHA1Q9Y5I3 950 aa16.07■□□□□ 0.16
UPF1-205ENST00000598209 DDX49Q9Y6V7 483 aaKnown RBP16.07■□□□□ 0.16
UPF1-205ENST00000598209 PNMA6FA0A0J9YX94 578 aa16.06■□□□□ 0.16
UPF1-205ENST00000598209 KLF18A0A0U1RQI7 1052 aa16.06■□□□□ 0.16
UPF1-205ENST00000598209 ZBTB43O43298 467 aa16.06■□□□□ 0.16
UPF1-205ENST00000598209 RARBP10826 455 aa16.06■□□□□ 0.16
UPF1-205ENST00000598209 TRAF1Q13077 416 aa16.06■□□□□ 0.16
UPF1-205ENST00000598209 SRBD1Q8N5C6 995 aaKnown RBP16.06■□□□□ 0.16
UPF1-205ENST00000598209 RRP36Q96EU6 259 aaKnown RBP16.06■□□□□ 0.16
UPF1-205ENST00000598209 MAF1Q9H063 256 aa16.06■□□□□ 0.16
UPF1-205ENST00000598209 KATNBL1Q9H079 304 aa16.06■□□□□ 0.16
UPF1-205ENST00000598209 FAM184BQ9ULE4 1060 aa16.06■□□□□ 0.16
UPF1-205ENST00000598209 LOC102724159A0A0B4J2E5 919 aa16.05■□□□□ 0.16
UPF1-205ENST00000598209 PWP2Q15269 919 aaKnown RBP16.05■□□□□ 0.16
UPF1-205ENST00000598209 TMTC3Q6ZXV5 915 aa16.05■□□□□ 0.16
UPF1-205ENST00000598209 CMTR1Q8N1G2 835 aaKnown RBP16.05■□□□□ 0.16
UPF1-205ENST00000598209 DNERQ8NFT8 737 aa16.05■□□□□ 0.16
UPF1-205ENST00000598209 MORC4Q8TE76 937 aa16.05■□□□□ 0.16
UPF1-205ENST00000598209 LENG1Q96BZ8 264 aaPredicted RBP16.05■□□□□ 0.16
UPF1-205ENST00000598209 HTATIP2Q9BUP3 242 aa16.05■□□□□ 0.16
UPF1-205ENST00000598209 C11orf49Q9H6J7 331 aa16.05■□□□□ 0.16
UPF1-205ENST00000598209 NAP1L2Q9ULW6 460 aaPredicted RBP16.05■□□□□ 0.16
UPF1-205ENST00000598209 KIAA1217Q5T5P2 1943 aa16.04■□□□□ 0.16
UPF1-205ENST00000598209 GOLGA8AA7E2F4 631 aa16.04■□□□□ 0.16
UPF1-205ENST00000598209 GOLGA8BA8MQT2 603 aa16.04■□□□□ 0.16
UPF1-205ENST00000598209 OPLAHO14841 1288 aa16.04■□□□□ 0.16
UPF1-205ENST00000598209 CFBP00751 764 aa16.04■□□□□ 0.16
UPF1-205ENST00000598209 APOBRQ0VD83 1088 aa16.04■□□□□ 0.16
UPF1-205ENST00000598209 RTN1Q16799 776 aa16.04■□□□□ 0.16
UPF1-205ENST00000598209 CCDC144BQ3MJ40 725 aa16.04■□□□□ 0.16
UPF1-205ENST00000598209 GJC2Q5T442 439 aaPredicted RBP16.04■□□□□ 0.16
UPF1-205ENST00000598209 RUFY3Q7L099 469 aa16.04■□□□□ 0.16
UPF1-205ENST00000598209 ARRDC4Q8NCT1 418 aa16.04■□□□□ 0.16
UPF1-205ENST00000598209 SYTL5Q8TDW5 730 aaPredicted RBP16.04■□□□□ 0.16
UPF1-205ENST00000598209 BRF1Q92994 677 aa16.04■□□□□ 0.16
UPF1-205ENST00000598209 ZSWIM6Q9HCJ5 1215 aa16.04■□□□□ 0.16
UPF1-205ENST00000598209 XPNPEP3Q9NQH7 507 aa16.04■□□□□ 0.16
UPF1-205ENST00000598209 RBM28Q9NW13 759 aaKnown RBP16.04■□□□□ 0.16
UPF1-205ENST00000598209 COL20A1Q9P218 1284 aa16.04■□□□□ 0.16
UPF1-205ENST00000598209 SEC63Q9UGP8 760 aaKnown RBP16.04■□□□□ 0.16
UPF1-205ENST00000598209 DNM1LO00429 736 aa16.03■□□□□ 0.16
UPF1-205ENST00000598209 EIF5BO60841 1220 aaKnown RBP16.03■□□□□ 0.16
UPF1-205ENST00000598209 MYCNP04198 464 aaPredicted RBP16.03■□□□□ 0.16
UPF1-205ENST00000598209 HSD17B4P51659 736 aa16.03■□□□□ 0.16
UPF1-205ENST00000598209 RCAN1P53805 252 aa16.03■□□□□ 0.16
UPF1-205ENST00000598209 EEPD1Q7L9B9 569 aa16.03■□□□□ 0.16
UPF1-205ENST00000598209 FBXO16Q8IX29 292 aaPredicted RBP16.03■□□□□ 0.16
UPF1-205ENST00000598209 FBXL16Q8N461 479 aa16.03■□□□□ 0.16
UPF1-205ENST00000598209 CCDC82Q8N4S0 544 aa16.03■□□□□ 0.16
UPF1-205ENST00000598209 TAAR1Q96RJ0 339 aa16.03■□□□□ 0.16
UPF1-205ENST00000598209 MPHOSPH6Q99547 160 aaKnown RBP16.03■□□□□ 0.16
UPF1-205ENST00000598209 AGXT2Q9BYV1 514 aa16.03■□□□□ 0.16
UPF1-205ENST00000598209 TM6SF1Q9BZW5 370 aa16.03■□□□□ 0.16
UPF1-205ENST00000598209 CYP46A1Q9Y6A2 500 aa16.03■□□□□ 0.16
UPF1-205ENST00000598209 KBTBD13C9JR72 458 aa16.02■□□□□ 0.16
UPF1-205ENST00000598209 ADCY6O43306 1168 aa16.02■□□□□ 0.16
UPF1-205ENST00000598209 DUSP11O75319 330 aaKnown RBP16.02■□□□□ 0.16
UPF1-205ENST00000598209 PGK1P00558 417 aa16.02■□□□□ 0.16
UPF1-205ENST00000598209 COL6A1P12109 1028 aa16.02■□□□□ 0.16
UPF1-205ENST00000598209 GHRHRQ02643 423 aa16.02■□□□□ 0.16
UPF1-205ENST00000598209 PDE4DQ08499 809 aa16.02■□□□□ 0.16
UPF1-205ENST00000598209 LRRC41Q15345 812 aa16.02■□□□□ 0.16
UPF1-205ENST00000598209 SAMD3Q8N6K7 520 aa16.02■□□□□ 0.16
UPF1-205ENST00000598209 DPF3Q92784 378 aa16.02■□□□□ 0.16
UPF1-205ENST00000598209 VTA1Q9NP79 307 aa16.02■□□□□ 0.16
UPF1-205ENST00000598209 PDGFCQ9NRA1 345 aa16.02■□□□□ 0.16
UPF1-205ENST00000598209 MAP3K20Q9NYL2 800 aaKnown RBP16.02■□□□□ 0.16
UPF1-205ENST00000598209 CNTNAP5Q8WYK1 1306 aa16.01■□□□□ 0.15
UPF1-205ENST00000598209 SYNRGQ9UMZ2 1314 aa16.01■□□□□ 0.15
UPF1-205ENST00000598209 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.01■□□□□ 0.15
UPF1-205ENST00000598209 hCG_1642624A0A1W2PR95 340 aa16.01■□□□□ 0.15
UPF1-205ENST00000598209 B4DLN1 442 aa16.01■□□□□ 0.15
UPF1-205ENST00000598209 EDNRBP24530 442 aa16.01■□□□□ 0.15
UPF1-205ENST00000598209 CDC27P30260 824 aa16.01■□□□□ 0.15
UPF1-205ENST00000598209 HOXA13P31271 388 aaPredicted RBP16.01■□□□□ 0.15
UPF1-205ENST00000598209 ADCYAP1R1P41586 468 aa16.01■□□□□ 0.15
UPF1-205ENST00000598209 METAP2P50579 478 aaKnown RBP eCLIP16.01■□□□□ 0.15
UPF1-205ENST00000598209 MRPL12P52815 198 aaKnown RBP16.01■□□□□ 0.15
UPF1-205ENST00000598209 TNFAIP2Q03169 654 aa16.01■□□□□ 0.15
UPF1-205ENST00000598209 TAPT1Q6NXT6 567 aa16.01■□□□□ 0.15
UPF1-205ENST00000598209 NSUN6Q8TEA1 469 aaKnown RBP16.01■□□□□ 0.15
UPF1-205ENST00000598209 RMDN3Q96TC7 470 aa16.01■□□□□ 0.15
UPF1-205ENST00000598209 UPF3BQ9BZI7 483 aaKnown RBP16.01■□□□□ 0.15
UPF1-205ENST00000598209 FAM217BQ9NTX9 383 aaPredicted RBP16.01■□□□□ 0.15
UPF1-205ENST00000598209 GCOM1H8Y6P7 765 aaPredicted RBP16■□□□□ 0.15
UPF1-205ENST00000598209 ADAMTS4O75173 837 aa16■□□□□ 0.15
UPF1-205ENST00000598209 SEC24BO95487 1268 aa16■□□□□ 0.15
UPF1-205ENST00000598209 POLR2MP0CAP2 368 aa16■□□□□ 0.15
UPF1-205ENST00000598209 ANAPC15P60006 121 aa16■□□□□ 0.15
UPF1-205ENST00000598209 FUT2Q10981 343 aa16■□□□□ 0.15
UPF1-205ENST00000598209 TOB2Q14106 344 aaPredicted RBP16■□□□□ 0.15
UPF1-205ENST00000598209 ARHGEF16Q5VV41 709 aa16■□□□□ 0.15
UPF1-205ENST00000598209 IQSEC1Q6DN90 963 aa16■□□□□ 0.15
UPF1-205ENST00000598209 NOL8Q76FK4 1167 aaKnown RBP16■□□□□ 0.15
UPF1-205ENST00000598209 RNF180Q86T96 592 aa16■□□□□ 0.15
UPF1-205ENST00000598209 SENP6Q9GZR1 1112 aaPredicted RBP16■□□□□ 0.15
UPF1-205ENST00000598209 NID2Q14112 1375 aa16■□□□□ 0.15
UPF1-205ENST00000598209 CCDC196A0A1B0GTZ2 297 aa15.99■□□□□ 0.15
UPF1-205ENST00000598209 SMPD1P17405 629 aa15.99■□□□□ 0.15
UPF1-205ENST00000598209 EIF2AK2P19525 551 aaKnown RBP15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms