RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 MRPL12P52815 198 aaKnown RBP19.26■□□□□ 0.67
SHKBP1-216ENST00000598201 HIRAP54198 1017 aaPredicted RBP19.26■□□□□ 0.67
SHKBP1-216ENST00000598201 FANCCQ00597 558 aa19.26■□□□□ 0.67
SHKBP1-216ENST00000598201 USP50Q70EL3 339 aaPredicted RBP19.26■□□□□ 0.67
SHKBP1-216ENST00000598201 FAM83AQ86UY5 434 aa19.26■□□□□ 0.67
SHKBP1-216ENST00000598201 TRMT44Q8IYL2 757 aaKnown RBP19.26■□□□□ 0.67
SHKBP1-216ENST00000598201 MTMR9Q96QG7 549 aa19.26■□□□□ 0.67
SHKBP1-216ENST00000598201 PLIN2Q99541 437 aa19.26■□□□□ 0.67
SHKBP1-216ENST00000598201 ZBTB21Q9ULJ3 1066 aa19.26■□□□□ 0.67
SHKBP1-216ENST00000598201 BMP3P12645 472 aa19.26■□□□□ 0.67
SHKBP1-216ENST00000598201 ORC2Q13416 577 aaPredicted RBP19.26■□□□□ 0.67
SHKBP1-216ENST00000598201 ARID5BQ14865 1188 aa19.26■□□□□ 0.67
SHKBP1-216ENST00000598201 PNMA8AQ86V59 439 aaPredicted RBP19.26■□□□□ 0.67
SHKBP1-216ENST00000598201 SMYD4Q8IYR2 804 aaPredicted RBP19.26■□□□□ 0.67
SHKBP1-216ENST00000598201 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.26■□□□□ 0.67
SHKBP1-216ENST00000598201 USP17L15C9J2P7 530 aa19.25■□□□□ 0.67
SHKBP1-216ENST00000598201 USP17L13C9JLJ4 530 aa19.25■□□□□ 0.67
SHKBP1-216ENST00000598201 USP17L11C9JVI0 530 aa19.25■□□□□ 0.67
SHKBP1-216ENST00000598201 USP17L18D6R9N7 530 aa19.25■□□□□ 0.67
SHKBP1-216ENST00000598201 USP17L22D6RA61 530 aa19.25■□□□□ 0.67
SHKBP1-216ENST00000598201 USP17L17D6RBQ6 530 aa19.25■□□□□ 0.67
SHKBP1-216ENST00000598201 USP17L19D6RCP7 530 aa19.25■□□□□ 0.67
SHKBP1-216ENST00000598201 USP17L20D6RJB6 530 aa19.25■□□□□ 0.67
SHKBP1-216ENST00000598201 MYO1BO43795 1136 aa19.25■□□□□ 0.67
SHKBP1-216ENST00000598201 GTPBP6O43824 516 aaPredicted RBP19.25■□□□□ 0.67
SHKBP1-216ENST00000598201 TECP42680 631 aa19.25■□□□□ 0.67
SHKBP1-216ENST00000598201 USP17L24Q0WX57 530 aa19.25■□□□□ 0.67
SHKBP1-216ENST00000598201 SYDE2Q5VT97 1194 aa19.25■□□□□ 0.67
SHKBP1-216ENST00000598201 USP17L6PQ6QN14 398 aa19.25■□□□□ 0.67
SHKBP1-216ENST00000598201 CACTINQ8WUQ7 758 aaKnown RBP19.25■□□□□ 0.67
SHKBP1-216ENST00000598201 DACH1Q9UI36 760 aa19.25■□□□□ 0.67
SHKBP1-216ENST00000598201 TBC1D12O60347 775 aa19.24■□□□□ 0.67
SHKBP1-216ENST00000598201 TAL1P17542 331 aaPredicted RBP19.24■□□□□ 0.67
SHKBP1-216ENST00000598201 IKQ13123 557 aaPredicted RBP19.24■□□□□ 0.67
SHKBP1-216ENST00000598201 EAPPQ56P03 285 aaPredicted RBP19.24■□□□□ 0.67
SHKBP1-216ENST00000598201 RRAGBQ5VZM2 374 aa19.24■□□□□ 0.67
SHKBP1-216ENST00000598201 ENOX1Q8TC92 643 aaKnown RBP19.24■□□□□ 0.67
SHKBP1-216ENST00000598201 AK8Q96MA6 479 aa19.24■□□□□ 0.67
SHKBP1-216ENST00000598201 TXKP42681 527 aa19.24■□□□□ 0.67
SHKBP1-216ENST00000598201 CALCRLQ16602 461 aa19.24■□□□□ 0.67
SHKBP1-216ENST00000598201 HSP90AA4PQ58FG1 418 aa19.24■□□□□ 0.67
SHKBP1-216ENST00000598201 BTNL9Q6UXG8 535 aa19.24■□□□□ 0.67
SHKBP1-216ENST00000598201 FILIP1Q7Z7B0 1213 aa19.24■□□□□ 0.67
SHKBP1-216ENST00000598201 ZNF784Q8NCA9 323 aaPredicted RBP19.24■□□□□ 0.67
SHKBP1-216ENST00000598201 RASSF8Q8NHQ8 419 aa19.24■□□□□ 0.67
SHKBP1-216ENST00000598201 KIAA1524Q8TCG1 905 aa19.24■□□□□ 0.67
SHKBP1-216ENST00000598201 MMTAG2Q9BU76 263 aaKnown RBP19.24■□□□□ 0.67
SHKBP1-216ENST00000598201 TMX2Q9Y320 296 aa19.24■□□□□ 0.67
SHKBP1-216ENST00000598201 CABP7Q86V35 215 aa19.23■□□□□ 0.67
SHKBP1-216ENST00000598201 IGSF22Q8N9C0 903 aa19.23■□□□□ 0.67
SHKBP1-216ENST00000598201 ARHGEF10LQ9HCE6 1279 aa19.23■□□□□ 0.67
SHKBP1-216ENST00000598201 SYNPO2Q9UMS6 1093 aa19.23■□□□□ 0.67
SHKBP1-216ENST00000598201 NFE2L3Q9Y4A8 694 aa19.23■□□□□ 0.67
SHKBP1-216ENST00000598201 PPP1R3GB7ZBB8 358 aa19.23■□□□□ 0.67
SHKBP1-216ENST00000598201 OFD1O75665 1012 aa19.23■□□□□ 0.67
SHKBP1-216ENST00000598201 ERCC5P28715 1186 aaPredicted RBP19.23■□□□□ 0.67
SHKBP1-216ENST00000598201 P2RX7Q99572 595 aaKnown RBP19.23■□□□□ 0.67
SHKBP1-216ENST00000598201 MEIS2O14770 477 aa19.22■□□□□ 0.67
SHKBP1-216ENST00000598201 ZNF18P17022 549 aa19.22■□□□□ 0.67
SHKBP1-216ENST00000598201 PLCG1P19174 1290 aa19.22■□□□□ 0.67
SHKBP1-216ENST00000598201 CAP2P40123 477 aa19.22■□□□□ 0.67
SHKBP1-216ENST00000598201 USH1GQ495M9 461 aa19.22■□□□□ 0.67
SHKBP1-216ENST00000598201 PPP4R3AQ6IN85 833 aa19.22■□□□□ 0.67
SHKBP1-216ENST00000598201 KLHL10Q6JEL2 608 aa19.22■□□□□ 0.67
SHKBP1-216ENST00000598201 AMNQ9BXJ7 453 aa19.22■□□□□ 0.67
SHKBP1-216ENST00000598201 PRR12Q9ULL5 1215 aa19.22■□□□□ 0.67
SHKBP1-216ENST00000598201 MAP3K10Q02779 954 aa19.21■□□□□ 0.67
SHKBP1-216ENST00000598201 RASA3Q14644 834 aa19.21■□□□□ 0.67
SHKBP1-216ENST00000598201 NOLC1Q14978 699 aaKnown RBP eCLIP19.21■□□□□ 0.67
SHKBP1-216ENST00000598201 CCDC84Q86UT8 332 aaPredicted RBP19.21■□□□□ 0.67
SHKBP1-216ENST00000598201 FBXO11Q86XK2 927 aa19.21■□□□□ 0.67
SHKBP1-216ENST00000598201 NAP1L5Q96NT1 182 aaPredicted RBP19.21■□□□□ 0.67
SHKBP1-216ENST00000598201 GLIS2Q9BZE0 524 aaPredicted RBP19.21■□□□□ 0.67
SHKBP1-216ENST00000598201 KBTBD4Q9NVX7 518 aa19.21■□□□□ 0.67
SHKBP1-216ENST00000598201 ASTN2O75129 1339 aaPredicted RBP19.21■□□□□ 0.67
SHKBP1-216ENST00000598201 MYH7BA7E2Y1 1941 aa19.21■□□□□ 0.67
SHKBP1-216ENST00000598201 SERPINC1P01008 464 aa19.21■□□□□ 0.67
SHKBP1-216ENST00000598201 RPN1P04843 607 aaKnown RBP19.21■□□□□ 0.67
SHKBP1-216ENST00000598201 POTEIP0CG38 1075 aa19.21■□□□□ 0.67
SHKBP1-216ENST00000598201 POTEJP0CG39 1038 aa19.21■□□□□ 0.67
SHKBP1-216ENST00000598201 STX17P56962 302 aa19.21■□□□□ 0.67
SHKBP1-216ENST00000598201 UBASH3AP57075 661 aa19.21■□□□□ 0.67
SHKBP1-216ENST00000598201 FAM83BQ5T0W9 1011 aa19.21■□□□□ 0.67
SHKBP1-216ENST00000598201 LRRC8AQ8IWT6 810 aa19.21■□□□□ 0.67
SHKBP1-216ENST00000598201 SAMSN1Q9NSI8 373 aaKnown RBP19.21■□□□□ 0.67
SHKBP1-216ENST00000598201 CLEC11AQ9Y240 323 aa19.21■□□□□ 0.67
SHKBP1-216ENST00000598201 FXR2P51116 673 aaKnown RBP eCLIP19.2■□□□□ 0.66
SHKBP1-216ENST00000598201 TMC6Q7Z403 805 aa19.2■□□□□ 0.66
SHKBP1-216ENST00000598201 ZC3H15Q8WU90 426 aaKnown RBP19.2■□□□□ 0.66
SHKBP1-216ENST00000598201 HAS1Q92839 578 aa19.2■□□□□ 0.66
SHKBP1-216ENST00000598201 GJA10Q969M2 543 aa19.2■□□□□ 0.66
SHKBP1-216ENST00000598201 GLT8D2Q9H1C3 349 aa19.2■□□□□ 0.66
SHKBP1-216ENST00000598201 GOPCQ9HD26 462 aa19.2■□□□□ 0.66
SHKBP1-216ENST00000598201 DDX25Q9UHL0 483 aaKnown RBP19.2■□□□□ 0.66
SHKBP1-216ENST00000598201 OPLAHO14841 1288 aa19.2■□□□□ 0.66
SHKBP1-216ENST00000598201 ZYXQ15942 572 aaKnown RBP19.2■□□□□ 0.66
SHKBP1-216ENST00000598201 CT47A1Q5JQC4 288 aaPredicted RBP19.2■□□□□ 0.66
SHKBP1-216ENST00000598201 ANGEL2Q5VTE6 544 aaKnown RBP19.2■□□□□ 0.66
SHKBP1-216ENST00000598201 TEPSINQ96N21 525 aa19.2■□□□□ 0.66
SHKBP1-216ENST00000598201 ANO3Q9BYT9 981 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms