RNA–Protein interactions for RNA: ENST00000596436.5

USHBP1-206, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 487 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-206ENST00000596436 MAP4K1Q92918 833 aa18.72■□□□□ 0.59
USHBP1-206ENST00000596436 TRERF1Q96PN7 1200 aa18.72■□□□□ 0.59
USHBP1-206ENST00000596436 IL23AQ9NPF7 189 aa18.72■□□□□ 0.59
USHBP1-206ENST00000596436 CYP39A1Q9NYL5 469 aa18.72■□□□□ 0.59
USHBP1-206ENST00000596436 Q9Y3F1 56 aa18.72■□□□□ 0.59
USHBP1-206ENST00000596436 GBF1Q92538 1859 aa18.71■□□□□ 0.59
USHBP1-206ENST00000596436 GRXCR1A8MXD5 290 aa18.71■□□□□ 0.59
USHBP1-206ENST00000596436 CYP21A2P08686 494 aa18.71■□□□□ 0.59
USHBP1-206ENST00000596436 SMPD1P17405 629 aa18.71■□□□□ 0.59
USHBP1-206ENST00000596436 MCCP23508 829 aa18.71■□□□□ 0.59
USHBP1-206ENST00000596436 CYP2C18P33260 490 aa18.71■□□□□ 0.59
USHBP1-206ENST00000596436 FSCN1Q16658 493 aaKnown RBP18.71■□□□□ 0.59
USHBP1-206ENST00000596436 CXCL17Q6UXB2 119 aa18.71■□□□□ 0.59
USHBP1-206ENST00000596436 VTI1AQ96AJ9 217 aa18.71■□□□□ 0.59
USHBP1-206ENST00000596436 PPP1R12CQ9BZL4 782 aa18.71■□□□□ 0.59
USHBP1-206ENST00000596436 RNF41Q9H4P4 317 aaPredicted RBP18.71■□□□□ 0.59
USHBP1-206ENST00000596436 PRR12Q9ULL5 1215 aa18.71■□□□□ 0.59
USHBP1-206ENST00000596436 RBM8AQ9Y5S9 174 aaKnown RBP18.71■□□□□ 0.59
USHBP1-206ENST00000596436 U3KPZ7 1027 aaPredicted RBP18.71■□□□□ 0.59
USHBP1-206ENST00000596436 ACRP10323 421 aa18.7■□□□□ 0.58
USHBP1-206ENST00000596436 MUM1L1Q5H9M0 696 aa18.7■□□□□ 0.58
USHBP1-206ENST00000596436 IQSEC1Q6DN90 963 aa18.7■□□□□ 0.58
USHBP1-206ENST00000596436 KCTD1Q719H9 257 aa18.7■□□□□ 0.58
USHBP1-206ENST00000596436 PRDM6Q9NQX0 595 aa18.7■□□□□ 0.58
USHBP1-206ENST00000596436 B4E1Z4 1266 aa18.69■□□□□ 0.58
USHBP1-206ENST00000596436 ALAS1P13196 640 aa18.69■□□□□ 0.58
USHBP1-206ENST00000596436 ITGA7Q13683 1181 aa18.69■□□□□ 0.58
USHBP1-206ENST00000596436 TJAP1Q5JTD0 557 aa18.69■□□□□ 0.58
USHBP1-206ENST00000596436 RASGRP2Q7LDG7 609 aa18.69■□□□□ 0.58
USHBP1-206ENST00000596436 VWCEQ96DN2 955 aa18.69■□□□□ 0.58
USHBP1-206ENST00000596436 NOC4LQ9BVI4 516 aaKnown RBP18.69■□□□□ 0.58
USHBP1-206ENST00000596436 HIPK3Q9H422 1215 aa18.69■□□□□ 0.58
USHBP1-206ENST00000596436 VTA1Q9NP79 307 aa18.69■□□□□ 0.58
USHBP1-206ENST00000596436 PDGFCQ9NRA1 345 aa18.69■□□□□ 0.58
USHBP1-206ENST00000596436 CXXC1Q9P0U4 656 aaPredicted RBP18.69■□□□□ 0.58
USHBP1-206ENST00000596436 STX8Q9UNK0 236 aa18.69■□□□□ 0.58
USHBP1-206ENST00000596436 DDX49Q9Y6V7 483 aaKnown RBP18.69■□□□□ 0.58
USHBP1-206ENST00000596436 UMODL1Q5DID0 1318 aa18.69■□□□□ 0.58
USHBP1-206ENST00000596436 BDP1A6H8Y1 2624 aa18.69■□□□□ 0.58
USHBP1-206ENST00000596436 XIRP2A4UGR9 3374 aa18.68■□□□□ 0.58
USHBP1-206ENST00000596436 LOC102724159A0A0B4J2E5 919 aa18.68■□□□□ 0.58
USHBP1-206ENST00000596436 KDM4AO75164 1064 aa18.68■□□□□ 0.58
USHBP1-206ENST00000596436 ICAM1P05362 532 aa18.68■□□□□ 0.58
USHBP1-206ENST00000596436 PTGS1P23219 599 aa18.68■□□□□ 0.58
USHBP1-206ENST00000596436 IKQ13123 557 aaPredicted RBP18.68■□□□□ 0.58
USHBP1-206ENST00000596436 PWP2Q15269 919 aaKnown RBP18.68■□□□□ 0.58
USHBP1-206ENST00000596436 TMEM63BQ5T3F8 832 aa18.68■□□□□ 0.58
USHBP1-206ENST00000596436 BTNL9Q6UXG8 535 aa18.68■□□□□ 0.58
USHBP1-206ENST00000596436 KIAA1211Q6ZU35 1233 aa18.68■□□□□ 0.58
USHBP1-206ENST00000596436 STOX1Q6ZVD7 989 aa18.68■□□□□ 0.58
USHBP1-206ENST00000596436 ESR2Q92731 530 aa18.68■□□□□ 0.58
USHBP1-206ENST00000596436 WNT8AQ9H1J5 351 aa18.68■□□□□ 0.58
USHBP1-206ENST00000596436 RANBP17Q9H2T7 1088 aaKnown RBP18.68■□□□□ 0.58
USHBP1-206ENST00000596436 ANO2Q9NQ90 1003 aa18.68■□□□□ 0.58
USHBP1-206ENST00000596436 TCP11L1Q9NUJ3 509 aa18.68■□□□□ 0.58
USHBP1-206ENST00000596436 DYNC1LI2O43237 492 aaPredicted RBP18.67■□□□□ 0.58
USHBP1-206ENST00000596436 B4GALT4O60513 344 aa18.67■□□□□ 0.58
USHBP1-206ENST00000596436 SNAP25P60880 206 aa18.67■□□□□ 0.58
USHBP1-206ENST00000596436 RAB30Q15771 203 aa18.67■□□□□ 0.58
USHBP1-206ENST00000596436 FBXO16Q8IX29 292 aaPredicted RBP18.67■□□□□ 0.58
USHBP1-206ENST00000596436 DCAF4Q8WV16 495 aa18.67■□□□□ 0.58
USHBP1-206ENST00000596436 ZKSCAN3Q9BRR0 538 aa18.67■□□□□ 0.58
USHBP1-206ENST00000596436 AP5M1Q9H0R1 490 aa18.67■□□□□ 0.58
USHBP1-206ENST00000596436 RBM47A0AV96 593 aaKnown RBP18.66■□□□□ 0.58
USHBP1-206ENST00000596436 ZEB2O60315 1214 aa18.66■□□□□ 0.58
USHBP1-206ENST00000596436 FGBP02675 491 aa18.66■□□□□ 0.58
USHBP1-206ENST00000596436 ADGRE1Q14246 886 aa18.66■□□□□ 0.58
USHBP1-206ENST00000596436 DUSP28Q4G0W2 176 aa18.66■□□□□ 0.58
USHBP1-206ENST00000596436 CASC1Q6TDU7 716 aa18.66■□□□□ 0.58
USHBP1-206ENST00000596436 NOL8Q76FK4 1167 aaKnown RBP18.66■□□□□ 0.58
USHBP1-206ENST00000596436 GAS2L1Q99501 681 aaPredicted RBP18.66■□□□□ 0.58
USHBP1-206ENST00000596436 TRPV6Q9H1D0 765 aa18.66■□□□□ 0.58
USHBP1-206ENST00000596436 MTIF3Q9H2K0 278 aaKnown RBP18.66■□□□□ 0.58
USHBP1-206ENST00000596436 PRDM12Q9H4Q4 367 aa18.66■□□□□ 0.58
USHBP1-206ENST00000596436 ZSWIM5Q9P217 1185 aa18.66■□□□□ 0.58
USHBP1-206ENST00000596436 CCPG1Q9ULG6 757 aa18.66■□□□□ 0.58
USHBP1-206ENST00000596436 E7EWF7 191 aa18.65■□□□□ 0.58
USHBP1-206ENST00000596436 CYB5R4Q7L1T6 521 aa18.65■□□□□ 0.58
USHBP1-206ENST00000596436 ATXN2LQ8WWM7 1075 aaKnown RBP18.65■□□□□ 0.58
USHBP1-206ENST00000596436 CHMP4CQ96CF2 233 aa18.65■□□□□ 0.58
USHBP1-206ENST00000596436 PURBQ96QR8 312 aaKnown RBP18.65■□□□□ 0.58
USHBP1-206ENST00000596436 TMEM47Q9BQJ4 181 aa18.65■□□□□ 0.58
USHBP1-206ENST00000596436 KRT23Q9C075 422 aa18.65■□□□□ 0.58
USHBP1-206ENST00000596436 CNNM2Q9H8M5 875 aa18.65■□□□□ 0.58
USHBP1-206ENST00000596436 ISY1Q9ULR0 285 aaKnown RBP18.65■□□□□ 0.58
USHBP1-206ENST00000596436 YBX2Q9Y2T7 364 aaKnown RBP18.65■□□□□ 0.58
USHBP1-206ENST00000596436 SLC27A2O14975 620 aa18.64■□□□□ 0.57
USHBP1-206ENST00000596436 ALDH5A1P51649 535 aaPredicted RBP18.64■□□□□ 0.57
USHBP1-206ENST00000596436 PSMC6P62333 389 aa18.64■□□□□ 0.57
USHBP1-206ENST00000596436 NECTIN1Q15223 517 aa18.64■□□□□ 0.57
USHBP1-206ENST00000596436 NSMFQ6X4W1 530 aa18.64■□□□□ 0.57
USHBP1-206ENST00000596436 EEPD1Q7L9B9 569 aa18.64■□□□□ 0.57
USHBP1-206ENST00000596436 ALDH8A1Q9H2A2 487 aaPredicted RBP18.64■□□□□ 0.57
USHBP1-206ENST00000596436 MSRAQ9UJ68 235 aa18.64■□□□□ 0.57
USHBP1-206ENST00000596436 SCN10AQ9Y5Y9 1956 aa18.64■□□□□ 0.57
USHBP1-206ENST00000596436 NFIBO00712 420 aa18.63■□□□□ 0.57
USHBP1-206ENST00000596436 TOP1P11387 765 aaKnown RBP18.63■□□□□ 0.57
USHBP1-206ENST00000596436 NT5C2P49902 561 aa18.63■□□□□ 0.57
USHBP1-206ENST00000596436 CCL23P55773 120 aa18.63■□□□□ 0.57
USHBP1-206ENST00000596436 BAATQ14032 418 aaPredicted RBP18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms