RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 FSTL1Q12841 308 aa16.82■□□□□ 0.28
SHKBP1-211ENST00000595945 MUM1L1Q5H9M0 696 aa16.82■□□□□ 0.28
SHKBP1-211ENST00000595945 RGMBQ6NW40 437 aa16.82■□□□□ 0.28
SHKBP1-211ENST00000595945 KCNG4Q8TDN1 519 aa16.82■□□□□ 0.28
SHKBP1-211ENST00000595945 TBCKQ8TEA7 893 aa16.82■□□□□ 0.28
SHKBP1-211ENST00000595945 CRYGNQ8WXF5 182 aa16.82■□□□□ 0.28
SHKBP1-211ENST00000595945 TEX13BQ9BXU2 312 aa16.82■□□□□ 0.28
SHKBP1-211ENST00000595945 BTBD7Q9P203 1132 aa16.82■□□□□ 0.28
SHKBP1-211ENST00000595945 BTBD19C9JJ37 291 aa16.81■□□□□ 0.28
SHKBP1-211ENST00000595945 NFIBO00712 420 aa16.81■□□□□ 0.28
SHKBP1-211ENST00000595945 PPP6R2O75170 966 aa16.81■□□□□ 0.28
SHKBP1-211ENST00000595945 BMP15O95972 392 aa16.81■□□□□ 0.28
SHKBP1-211ENST00000595945 SLC10A3P09131 477 aa16.81■□□□□ 0.28
SHKBP1-211ENST00000595945 ATP2B1P20020 1258 aa16.81■□□□□ 0.28
SHKBP1-211ENST00000595945 STAT3P40763 770 aa16.81■□□□□ 0.28
SHKBP1-211ENST00000595945 ZNF157P51786 506 aaPredicted RBP16.81■□□□□ 0.28
SHKBP1-211ENST00000595945 UBE2HP62256 183 aa16.81■□□□□ 0.28
SHKBP1-211ENST00000595945 MKRN3Q13064 507 aaKnown RBP16.81■□□□□ 0.28
SHKBP1-211ENST00000595945 ORC2Q13416 577 aaPredicted RBP16.81■□□□□ 0.28
SHKBP1-211ENST00000595945 SNRNP48Q6IEG0 339 aaKnown RBP16.81■□□□□ 0.28
SHKBP1-211ENST00000595945 NEK8Q86SG6 692 aa16.81■□□□□ 0.28
SHKBP1-211ENST00000595945 MCF2L2Q86YR7 1114 aa16.81■□□□□ 0.28
SHKBP1-211ENST00000595945 C4orf32Q8N8J7 132 aa16.81■□□□□ 0.28
SHKBP1-211ENST00000595945 ZNF784Q8NCA9 323 aaPredicted RBP16.81■□□□□ 0.28
SHKBP1-211ENST00000595945 HHIPL1Q96JK4 782 aa16.81■□□□□ 0.28
SHKBP1-211ENST00000595945 TRERF1Q96PN7 1200 aa16.81■□□□□ 0.28
SHKBP1-211ENST00000595945 MAF1Q9H063 256 aa16.81■□□□□ 0.28
SHKBP1-211ENST00000595945 RNF146Q9NTX7 359 aa16.81■□□□□ 0.28
SHKBP1-211ENST00000595945 MAP3K20Q9NYL2 800 aaKnown RBP16.81■□□□□ 0.28
SHKBP1-211ENST00000595945 PCDHA7Q9UN72 937 aa16.81■□□□□ 0.28
SHKBP1-211ENST00000595945 CEP131Q9UPN4 1083 aa16.81■□□□□ 0.28
SHKBP1-211ENST00000595945 RIPK3Q9Y572 518 aa16.81■□□□□ 0.28
SHKBP1-211ENST00000595945 TMEM88BA6NKF7 163 aa16.8■□□□□ 0.28
SHKBP1-211ENST00000595945 HOXA13P31271 388 aaPredicted RBP16.8■□□□□ 0.28
SHKBP1-211ENST00000595945 ZNF174Q15697 407 aa16.8■□□□□ 0.28
SHKBP1-211ENST00000595945 AXDND1Q5T1B0 1012 aaPredicted RBP16.8■□□□□ 0.28
SHKBP1-211ENST00000595945 GTF3C2Q8WUA4 911 aaPredicted RBP16.8■□□□□ 0.28
SHKBP1-211ENST00000595945 PNMA3Q9UL41 463 aa16.8■□□□□ 0.28
SHKBP1-211ENST00000595945 RABGAP1Q9Y3P9 1069 aa16.8■□□□□ 0.28
SHKBP1-211ENST00000595945 FAM155AB1AL88 458 aaPredicted RBP16.79■□□□□ 0.28
SHKBP1-211ENST00000595945 PDHXO00330 501 aa16.79■□□□□ 0.28
SHKBP1-211ENST00000595945 CFBP00751 764 aa16.79■□□□□ 0.28
SHKBP1-211ENST00000595945 YY1P25490 414 aa16.79■□□□□ 0.28
SHKBP1-211ENST00000595945 SREBF1P36956 1147 aa16.79■□□□□ 0.28
SHKBP1-211ENST00000595945 ATP2C1P98194 919 aaPredicted RBP16.79■□□□□ 0.28
SHKBP1-211ENST00000595945 SKOR2Q2VWA4 1001 aaPredicted RBP16.79■□□□□ 0.28
SHKBP1-211ENST00000595945 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.79■□□□□ 0.28
SHKBP1-211ENST00000595945 RIOX2Q8IUF8 465 aa16.79■□□□□ 0.28
SHKBP1-211ENST00000595945 FAM43AQ8N2R8 423 aa16.79■□□□□ 0.28
SHKBP1-211ENST00000595945 JMYQ8N9B5 988 aa16.79■□□□□ 0.28
SHKBP1-211ENST00000595945 GPT2Q8TD30 523 aa16.79■□□□□ 0.28
SHKBP1-211ENST00000595945 MBOAT7Q96N66 472 aa16.79■□□□□ 0.28
SHKBP1-211ENST00000595945 PTPN18Q99952 460 aa16.79■□□□□ 0.28
SHKBP1-211ENST00000595945 RBPJLQ9UBG7 517 aa16.79■□□□□ 0.28
SHKBP1-211ENST00000595945 FRMPD4Q14CM0 1322 aa16.78■□□□□ 0.28
SHKBP1-211ENST00000595945 RPTORQ8N122 1335 aa16.78■□□□□ 0.28
SHKBP1-211ENST00000595945 A0A1W2PQ27 194 aa16.78■□□□□ 0.28
SHKBP1-211ENST00000595945 A0A1W2PQ64 194 aa16.78■□□□□ 0.28
SHKBP1-211ENST00000595945 A0A1W2PQD8 194 aa16.78■□□□□ 0.28
SHKBP1-211ENST00000595945 MANSC4A6NHS7 340 aaPredicted RBP16.78■□□□□ 0.28
SHKBP1-211ENST00000595945 TRAK2O60296 914 aa16.78■□□□□ 0.28
SHKBP1-211ENST00000595945 CYP3A4P08684 503 aa16.78■□□□□ 0.28
SHKBP1-211ENST00000595945 PTPREP23469 700 aa16.78■□□□□ 0.28
SHKBP1-211ENST00000595945 MARCKSP29966 332 aaPredicted RBP16.78■□□□□ 0.28
SHKBP1-211ENST00000595945 USP11P51784 963 aa16.78■□□□□ 0.28
SHKBP1-211ENST00000595945 ADALQ6DHV7 355 aa16.78■□□□□ 0.28
SHKBP1-211ENST00000595945 PPP4R3AQ6IN85 833 aa16.78■□□□□ 0.28
SHKBP1-211ENST00000595945 MOXD1Q6UVY6 613 aa16.78■□□□□ 0.28
SHKBP1-211ENST00000595945 CHST13Q8NET6 341 aa16.78■□□□□ 0.28
SHKBP1-211ENST00000595945 SYTL5Q8TDW5 730 aaPredicted RBP16.78■□□□□ 0.28
SHKBP1-211ENST00000595945 SPATC1LQ9H0A9 340 aa16.78■□□□□ 0.28
SHKBP1-211ENST00000595945 ACAD9Q9H845 621 aa16.78■□□□□ 0.28
SHKBP1-211ENST00000595945 TXNRD2Q9NNW7 524 aa16.78■□□□□ 0.28
SHKBP1-211ENST00000595945 ZCCHC17Q9NP64 241 aaKnown RBP16.78■□□□□ 0.28
SHKBP1-211ENST00000595945 HOMER2Q9NSB8 354 aa16.78■□□□□ 0.28
SHKBP1-211ENST00000595945 COL20A1Q9P218 1284 aa16.78■□□□□ 0.28
SHKBP1-211ENST00000595945 FBXO2Q9UK22 296 aaPredicted RBP16.78■□□□□ 0.28
SHKBP1-211ENST00000595945 KIAA1217Q5T5P2 1943 aa16.77■□□□□ 0.28
SHKBP1-211ENST00000595945 CYP3A7-CYP3A51PA0A087WV96 503 aa16.77■□□□□ 0.28
SHKBP1-211ENST00000595945 SPDYE3A6NKU9 549 aa16.77■□□□□ 0.28
SHKBP1-211ENST00000595945 PEX10O60683 326 aa16.77■□□□□ 0.28
SHKBP1-211ENST00000595945 CUTAO60888 179 aa16.77■□□□□ 0.28
SHKBP1-211ENST00000595945 MBD3O95983 291 aa16.77■□□□□ 0.28
SHKBP1-211ENST00000595945 CYP3A7P24462 503 aa16.77■□□□□ 0.28
SHKBP1-211ENST00000595945 CIITAP33076 1130 aa16.77■□□□□ 0.28
SHKBP1-211ENST00000595945 MCM7P33993 719 aa16.77■□□□□ 0.28
SHKBP1-211ENST00000595945 ME1P48163 572 aa16.77■□□□□ 0.28
SHKBP1-211ENST00000595945 PTGDRQ13258 359 aa16.77■□□□□ 0.28
SHKBP1-211ENST00000595945 KLHL40Q2TBA0 621 aa16.77■□□□□ 0.28
SHKBP1-211ENST00000595945 LETM2Q2VYF4 491 aa16.77■□□□□ 0.28
SHKBP1-211ENST00000595945 CCDC102AQ96A19 550 aa16.77■□□□□ 0.28
SHKBP1-211ENST00000595945 NAP1L4Q99733 375 aaKnown RBP16.77■□□□□ 0.28
SHKBP1-211ENST00000595945 SRPRBQ9Y5M8 271 aaKnown RBP16.77■□□□□ 0.28
SHKBP1-211ENST00000595945 MRVI1Q9Y6F6 885 aa16.77■□□□□ 0.28
SHKBP1-211ENST00000595945 PLXNB2O15031 1838 aa16.77■□□□□ 0.27
SHKBP1-211ENST00000595945 TDP2O95551 362 aa16.76■□□□□ 0.27
SHKBP1-211ENST00000595945 CYP2C8P10632 490 aa16.76■□□□□ 0.27
SHKBP1-211ENST00000595945 GCFC2P16383 781 aaKnown RBP16.76■□□□□ 0.27
SHKBP1-211ENST00000595945 COPB2P35606 906 aa16.76■□□□□ 0.27
SHKBP1-211ENST00000595945 RPS6P62753 249 aaKnown RBP16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms