RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 BRPF3Q9ULD4 1205 aa12.77□□□□□ -0.37
SHKBP1-206ENST00000595523 FAM184BQ9ULE4 1060 aa12.77□□□□□ -0.37
SHKBP1-206ENST00000595523 SYNRGQ9UMZ2 1314 aa12.77□□□□□ -0.37
SHKBP1-206ENST00000595523 LAMA3Q16787 3333 aa12.76□□□□□ -0.37
SHKBP1-206ENST00000595523 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.76□□□□□ -0.37
SHKBP1-206ENST00000595523 MYADML2A6NDP7 307 aa12.76□□□□□ -0.37
SHKBP1-206ENST00000595523 H0YGN5 161 aa12.76□□□□□ -0.37
SHKBP1-206ENST00000595523 EPB41L2O43491 1005 aaKnown RBP12.76□□□□□ -0.37
SHKBP1-206ENST00000595523 PTGS1P23219 599 aa12.76□□□□□ -0.37
SHKBP1-206ENST00000595523 EDNRBP24530 442 aa12.76□□□□□ -0.37
SHKBP1-206ENST00000595523 GHRHRQ02643 423 aa12.76□□□□□ -0.37
SHKBP1-206ENST00000595523 TMEM63BQ5T3F8 832 aa12.76□□□□□ -0.37
SHKBP1-206ENST00000595523 TAPT1Q6NXT6 567 aa12.76□□□□□ -0.37
SHKBP1-206ENST00000595523 APOA5Q6Q788 366 aa12.76□□□□□ -0.37
SHKBP1-206ENST00000595523 FBXO16Q8IX29 292 aaPredicted RBP12.76□□□□□ -0.37
SHKBP1-206ENST00000595523 CMTR1Q8N1G2 835 aaKnown RBP12.76□□□□□ -0.37
SHKBP1-206ENST00000595523 SRBD1Q8N5C6 995 aaKnown RBP12.76□□□□□ -0.37
SHKBP1-206ENST00000595523 CTCFLQ8NI51 663 aaPredicted RBP12.76□□□□□ -0.37
SHKBP1-206ENST00000595523 SYTL5Q8TDW5 730 aaPredicted RBP12.76□□□□□ -0.37
SHKBP1-206ENST00000595523 DPF3Q92784 378 aa12.76□□□□□ -0.37
SHKBP1-206ENST00000595523 JAKMIP1Q96N16 626 aaKnown RBP12.76□□□□□ -0.37
SHKBP1-206ENST00000595523 USP26Q9BXU7 913 aa12.76□□□□□ -0.37
SHKBP1-206ENST00000595523 PDGFCQ9NRA1 345 aa12.76□□□□□ -0.37
SHKBP1-206ENST00000595523 ADD3Q9UEY8 706 aaKnown RBP12.76□□□□□ -0.37
SHKBP1-206ENST00000595523 PCDHA1Q9Y5I3 950 aa12.76□□□□□ -0.37
SHKBP1-206ENST00000595523 SLC12A7Q9Y666 1083 aa12.76□□□□□ -0.37
SHKBP1-206ENST00000595523 LOC102724159A0A0B4J2E5 919 aa12.75□□□□□ -0.37
SHKBP1-206ENST00000595523 PNMA6FA0A0J9YX94 578 aa12.75□□□□□ -0.37
SHKBP1-206ENST00000595523 CTAGE5O15320 804 aa12.75□□□□□ -0.37
SHKBP1-206ENST00000595523 DUSP11O75319 330 aaKnown RBP12.75□□□□□ -0.37
SHKBP1-206ENST00000595523 LAMA2P24043 3122 aaKnown RBP12.75□□□□□ -0.37
SHKBP1-206ENST00000595523 SMARCA1P28370 1054 aa12.75□□□□□ -0.37
SHKBP1-206ENST00000595523 KIF5BP33176 963 aa12.75□□□□□ -0.37
SHKBP1-206ENST00000595523 ADCYAP1R1P41586 468 aa12.75□□□□□ -0.37
SHKBP1-206ENST00000595523 HSD17B4P51659 736 aa12.75□□□□□ -0.37
SHKBP1-206ENST00000595523 PWP2Q15269 919 aaKnown RBP12.75□□□□□ -0.37
SHKBP1-206ENST00000595523 LRRC26Q2I0M4 334 aa12.75□□□□□ -0.37
SHKBP1-206ENST00000595523 EEPD1Q7L9B9 569 aa12.75□□□□□ -0.37
SHKBP1-206ENST00000595523 MICU3Q86XE3 530 aa12.75□□□□□ -0.37
SHKBP1-206ENST00000595523 FANCBQ8NB91 859 aa12.75□□□□□ -0.37
SHKBP1-206ENST00000595523 ARRDC4Q8NCT1 418 aa12.75□□□□□ -0.37
SHKBP1-206ENST00000595523 DNERQ8NFT8 737 aa12.75□□□□□ -0.37
SHKBP1-206ENST00000595523 PIBF1Q8WXW3 757 aa12.75□□□□□ -0.37
SHKBP1-206ENST00000595523 MAF1Q9H063 256 aa12.75□□□□□ -0.37
SHKBP1-206ENST00000595523 UPF3AQ9H1J1 476 aaKnown RBP12.75□□□□□ -0.37
SHKBP1-206ENST00000595523 MRPL11Q9Y3B7 192 aaKnown RBP12.75□□□□□ -0.37
SHKBP1-206ENST00000595523 KBTBD13C9JR72 458 aa12.74□□□□□ -0.37
SHKBP1-206ENST00000595523 EVI5O60447 810 aa12.74□□□□□ -0.37
SHKBP1-206ENST00000595523 MYCNP04198 464 aaPredicted RBP12.74□□□□□ -0.37
SHKBP1-206ENST00000595523 HMGB1P09429 215 aaKnown RBP12.74□□□□□ -0.37
SHKBP1-206ENST00000595523 CALM1P0DP23 149 aa12.74□□□□□ -0.37
SHKBP1-206ENST00000595523 CALM2P0DP24 149 aa12.74□□□□□ -0.37
SHKBP1-206ENST00000595523 CALM3P0DP25 149 aa12.74□□□□□ -0.37
SHKBP1-206ENST00000595523 CCSAPQ6IQ19 270 aaPredicted RBP12.74□□□□□ -0.37
SHKBP1-206ENST00000595523 TMTC3Q6ZXV5 915 aa12.74□□□□□ -0.37
SHKBP1-206ENST00000595523 KLHDC9Q8NEP7 349 aa12.74□□□□□ -0.37
SHKBP1-206ENST00000595523 TAAR1Q96RJ0 339 aa12.74□□□□□ -0.37
SHKBP1-206ENST00000595523 SENP6Q9GZR1 1112 aaPredicted RBP12.74□□□□□ -0.37
SHKBP1-206ENST00000595523 VTA1Q9NP79 307 aa12.74□□□□□ -0.37
SHKBP1-206ENST00000595523 FAM217BQ9NTX9 383 aaPredicted RBP12.74□□□□□ -0.37
SHKBP1-206ENST00000595523 PCDH10Q9P2E7 1040 aa12.74□□□□□ -0.37
SHKBP1-206ENST00000595523 PHF24Q9UPV7 400 aa12.74□□□□□ -0.37
SHKBP1-206ENST00000595523 GNEQ9Y223 722 aaKnown RBP12.74□□□□□ -0.37
SHKBP1-206ENST00000595523 CNTNAP5Q8WYK1 1306 aa12.73□□□□□ -0.37
SHKBP1-206ENST00000595523 SCN10AQ9Y5Y9 1956 aa12.73□□□□□ -0.37
SHKBP1-206ENST00000595523 KLF18A0A0U1RQI7 1052 aa12.73□□□□□ -0.37
SHKBP1-206ENST00000595523 RBM47A0AV96 593 aaKnown RBP12.73□□□□□ -0.37
SHKBP1-206ENST00000595523 CFBP00751 764 aa12.73□□□□□ -0.37
SHKBP1-206ENST00000595523 SMPD1P17405 629 aa12.73□□□□□ -0.37
SHKBP1-206ENST00000595523 CASTP20810 708 aaKnown RBP12.73□□□□□ -0.37
SHKBP1-206ENST00000595523 RPS6KB1P23443 525 aa12.73□□□□□ -0.37
SHKBP1-206ENST00000595523 CST5P28325 142 aaPredicted RBP12.73□□□□□ -0.37
SHKBP1-206ENST00000595523 GJA9P57773 515 aa12.73□□□□□ -0.37
SHKBP1-206ENST00000595523 NKX3-2P78367 333 aa12.73□□□□□ -0.37
SHKBP1-206ENST00000595523 TNFAIP2Q03169 654 aa12.73□□□□□ -0.37
SHKBP1-206ENST00000595523 FUT2Q10981 343 aa12.73□□□□□ -0.37
SHKBP1-206ENST00000595523 BLOC1S2Q6QNY1 142 aa12.73□□□□□ -0.37
SHKBP1-206ENST00000595523 Q6ZUG5 572 aa12.73□□□□□ -0.37
SHKBP1-206ENST00000595523 MCF2L2Q86YR7 1114 aa12.73□□□□□ -0.37
SHKBP1-206ENST00000595523 C7orf61Q8IZ16 206 aa12.73□□□□□ -0.37
SHKBP1-206ENST00000595523 FERMT2Q96AC1 680 aa12.73□□□□□ -0.37
SHKBP1-206ENST00000595523 LZTS2Q9BRK4 669 aa12.73□□□□□ -0.37
SHKBP1-206ENST00000595523 AGXT2Q9BYV1 514 aa12.73□□□□□ -0.37
SHKBP1-206ENST00000595523 SZT2Q5T011 3432 aa12.72□□□□□ -0.37
SHKBP1-206ENST00000595523 NID2Q14112 1375 aa12.72□□□□□ -0.37
SHKBP1-206ENST00000595523 hCG_1642624A0A1W2PR95 340 aa12.72□□□□□ -0.37
SHKBP1-206ENST00000595523 ZBTB43O43298 467 aa12.72□□□□□ -0.37
SHKBP1-206ENST00000595523 CDC27P30260 824 aa12.72□□□□□ -0.37
SHKBP1-206ENST00000595523 HOXA13P31271 388 aaPredicted RBP12.72□□□□□ -0.37
SHKBP1-206ENST00000595523 GNAQP50148 359 aa12.72□□□□□ -0.37
SHKBP1-206ENST00000595523 ATN1P54259 1190 aaPredicted RBP12.72□□□□□ -0.37
SHKBP1-206ENST00000595523 APOBRQ0VD83 1088 aa12.72□□□□□ -0.37
SHKBP1-206ENST00000595523 SNX17Q15036 470 aa12.72□□□□□ -0.37
SHKBP1-206ENST00000595523 RNF180Q86T96 592 aa12.72□□□□□ -0.37
SHKBP1-206ENST00000595523 FBXL16Q8N461 479 aa12.72□□□□□ -0.37
SHKBP1-206ENST00000595523 CCDC82Q8N4S0 544 aa12.72□□□□□ -0.37
SHKBP1-206ENST00000595523 BRF1Q92994 677 aa12.72□□□□□ -0.37
SHKBP1-206ENST00000595523 RRP36Q96EU6 259 aaKnown RBP12.72□□□□□ -0.37
SHKBP1-206ENST00000595523 RMDN3Q96TC7 470 aa12.72□□□□□ -0.37
SHKBP1-206ENST00000595523 A0A1W2PQ45 241 aaPredicted RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms