RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 PPP4R3AQ6IN85 833 aa22.14■■□□□ 1.13
CLIP3-206ENST00000593074 ZNF710Q8N1W2 664 aa22.14■■□□□ 1.13
CLIP3-206ENST00000593074 GIMAP8Q8ND71 665 aaPredicted RBP22.14■■□□□ 1.13
CLIP3-206ENST00000593074 CSRNP1Q96S65 589 aa22.14■■□□□ 1.13
CLIP3-206ENST00000593074 ZNRF3Q9ULT6 936 aa22.14■■□□□ 1.13
CLIP3-206ENST00000593074 ITIH6Q6UXX5 1313 aa22.14■■□□□ 1.13
CLIP3-206ENST00000593074 ADKP55263 362 aaKnown RBP22.13■■□□□ 1.13
CLIP3-206ENST00000593074 ICA1Q05084 483 aa22.13■■□□□ 1.13
CLIP3-206ENST00000593074 UBE2SQ16763 222 aa22.13■■□□□ 1.13
CLIP3-206ENST00000593074 SLFN13Q68D06 897 aa22.13■■□□□ 1.13
CLIP3-206ENST00000593074 SIAH1Q8IUQ4 282 aa22.13■■□□□ 1.13
CLIP3-206ENST00000593074 NIM1KQ8IY84 436 aa22.13■■□□□ 1.13
CLIP3-206ENST00000593074 PANX2Q96RD6 677 aa22.13■■□□□ 1.13
CLIP3-206ENST00000593074 MAP7D2Q96T17 732 aa22.13■■□□□ 1.13
CLIP3-206ENST00000593074 C7orf25Q9BPX7 421 aa22.13■■□□□ 1.13
CLIP3-206ENST00000593074 TRIM9Q9C026 710 aa22.13■■□□□ 1.13
CLIP3-206ENST00000593074 TCP10L2B9ZVM9 353 aa22.13■■□□□ 1.13
CLIP3-206ENST00000593074 COBLO75128 1261 aa22.13■■□□□ 1.13
CLIP3-206ENST00000593074 GDF11O95390 407 aa22.13■■□□□ 1.13
CLIP3-206ENST00000593074 TXKP42681 527 aa22.13■■□□□ 1.13
CLIP3-206ENST00000593074 SLC1A4P43007 532 aa22.13■■□□□ 1.13
CLIP3-206ENST00000593074 TNNI2P48788 182 aa22.13■■□□□ 1.13
CLIP3-206ENST00000593074 MRPL12P52815 198 aaKnown RBP22.13■■□□□ 1.13
CLIP3-206ENST00000593074 HSP90AA2PQ14568 343 aaPredicted RBP22.13■■□□□ 1.13
CLIP3-206ENST00000593074 TCP11X2Q5H9J9 407 aa22.13■■□□□ 1.13
CLIP3-206ENST00000593074 RBM26Q5T8P6 1007 aaKnown RBP22.13■■□□□ 1.13
CLIP3-206ENST00000593074 MTERF4Q7Z6M4 381 aaKnown RBP22.13■■□□□ 1.13
CLIP3-206ENST00000593074 ZNF70Q9UC06 446 aaPredicted RBP22.13■■□□□ 1.13
CLIP3-206ENST00000593074 H7C1D1 291 aa22.12■■□□□ 1.13
CLIP3-206ENST00000593074 SYCP1Q15431 976 aa22.12■■□□□ 1.13
CLIP3-206ENST00000593074 TMEM266Q2M3C6 531 aa22.12■■□□□ 1.13
CLIP3-206ENST00000593074 CALML4Q96GE6 196 aa22.12■■□□□ 1.13
CLIP3-206ENST00000593074 MAPK8IP1Q9UQF2 711 aa22.12■■□□□ 1.13
CLIP3-206ENST00000593074 ZBTB12Q9Y330 459 aaPredicted RBP22.12■■□□□ 1.13
CLIP3-206ENST00000593074 AKR1B15C9JRZ8 316 aaPredicted RBP22.11■■□□□ 1.13
CLIP3-206ENST00000593074 STIM1Q13586 685 aa22.11■■□□□ 1.13
CLIP3-206ENST00000593074 PDIA5Q14554 519 aa22.11■■□□□ 1.13
CLIP3-206ENST00000593074 REXO1L1PQ8IX06 675 aa22.11■■□□□ 1.13
CLIP3-206ENST00000593074 GLT8D2Q9H1C3 349 aa22.11■■□□□ 1.13
CLIP3-206ENST00000593074 PSTPIP2Q9H939 334 aa22.11■■□□□ 1.13
CLIP3-206ENST00000593074 LRWD1Q9UFC0 647 aa22.11■■□□□ 1.13
CLIP3-206ENST00000593074 HERC5Q9UII4 1024 aaKnown RBP22.11■■□□□ 1.13
CLIP3-206ENST00000593074 CLRN2A0PK11 232 aa22.11■■□□□ 1.13
CLIP3-206ENST00000593074 KCNJ18B7U540 433 aa22.11■■□□□ 1.13
CLIP3-206ENST00000593074 ZSCAN12O43309 604 aa22.11■■□□□ 1.13
CLIP3-206ENST00000593074 ZBTB7AO95365 584 aa22.11■■□□□ 1.13
CLIP3-206ENST00000593074 KCNJ12Q14500 433 aa22.11■■□□□ 1.13
CLIP3-206ENST00000593074 QRICH1Q2TAL8 776 aa22.11■■□□□ 1.13
CLIP3-206ENST00000593074 GMCL1P1Q8NEA9 526 aa22.11■■□□□ 1.13
CLIP3-206ENST00000593074 ANKRD20A12PQ8NF67 263 aa22.11■■□□□ 1.13
CLIP3-206ENST00000593074 GTPBP4Q9BZE4 634 aaKnown RBP22.11■■□□□ 1.13
CLIP3-206ENST00000593074 RAB34Q9BZG1 259 aa22.11■■□□□ 1.13
CLIP3-206ENST00000593074 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.11■■□□□ 1.13
CLIP3-206ENST00000593074 STK17AQ9UEE5 414 aa22.11■■□□□ 1.13
CLIP3-206ENST00000593074 ATF5Q9Y2D1 282 aaPredicted RBP22.11■■□□□ 1.13
CLIP3-206ENST00000593074 MYH7BA7E2Y1 1941 aa22.1■■□□□ 1.13
CLIP3-206ENST00000593074 PSMA7O14818 248 aa22.1■■□□□ 1.13
CLIP3-206ENST00000593074 GCFC2P16383 781 aaKnown RBP22.1■■□□□ 1.13
CLIP3-206ENST00000593074 COPB1P53618 953 aaKnown RBP22.1■■□□□ 1.13
CLIP3-206ENST00000593074 AMPD3Q01432 767 aa22.1■■□□□ 1.13
CLIP3-206ENST00000593074 GRB10Q13322 594 aa22.1■■□□□ 1.13
CLIP3-206ENST00000593074 AGBL3Q8NEM8 1001 aa22.1■■□□□ 1.13
CLIP3-206ENST00000593074 FAM151AQ8WW52 585 aa22.1■■□□□ 1.13
CLIP3-206ENST00000593074 PDCL3Q9H2J4 239 aa22.1■■□□□ 1.13
CLIP3-206ENST00000593074 F5H6K3 240 aa22.1■■□□□ 1.13
CLIP3-206ENST00000593074 GH2P01242 217 aa22.1■■□□□ 1.13
CLIP3-206ENST00000593074 CCT6AP40227 531 aaKnown RBP22.1■■□□□ 1.13
CLIP3-206ENST00000593074 KLRC3Q07444 240 aa22.1■■□□□ 1.13
CLIP3-206ENST00000593074 PPFIBP1Q86W92 1011 aa22.1■■□□□ 1.13
CLIP3-206ENST00000593074 IRF2BP1Q8IU81 584 aa22.1■■□□□ 1.13
CLIP3-206ENST00000593074 CCDC47Q96A33 483 aaKnown RBP22.1■■□□□ 1.13
CLIP3-206ENST00000593074 PPP2R2CQ9Y2T4 447 aa22.1■■□□□ 1.13
CLIP3-206ENST00000593074 TRIM49BA6NDI0 452 aa22.09■■□□□ 1.13
CLIP3-206ENST00000593074 POLD1P28340 1107 aa22.09■■□□□ 1.13
CLIP3-206ENST00000593074 PMS1P54277 932 aaKnown RBP22.09■■□□□ 1.13
CLIP3-206ENST00000593074 RBL2Q08999 1139 aa22.09■■□□□ 1.13
CLIP3-206ENST00000593074 CCDC125Q86Z20 511 aa22.09■■□□□ 1.13
CLIP3-206ENST00000593074 DHTKD1Q96HY7 919 aaPredicted RBP22.09■■□□□ 1.13
CLIP3-206ENST00000593074 GMCL1Q96IK5 515 aa22.09■■□□□ 1.13
CLIP3-206ENST00000593074 THAP9Q9H5L6 903 aa22.09■■□□□ 1.13
CLIP3-206ENST00000593074 BLOC1S4Q9NUP1 217 aa22.09■■□□□ 1.13
CLIP3-206ENST00000593074 EXOC1Q9NV70 894 aa22.09■■□□□ 1.13
CLIP3-206ENST00000593074 COL4A5P29400 1685 aa22.09■■□□□ 1.13
CLIP3-206ENST00000593074 N4BP3O15049 544 aa22.08■■□□□ 1.13
CLIP3-206ENST00000593074 MFAP3LO75121 409 aa22.08■■□□□ 1.13
CLIP3-206ENST00000593074 ETF1P62495 437 aaKnown RBP22.08■■□□□ 1.13
CLIP3-206ENST00000593074 CDC37Q16543 378 aaPredicted RBP22.08■■□□□ 1.13
CLIP3-206ENST00000593074 SPDYE2Q495Y8 402 aa22.08■■□□□ 1.13
CLIP3-206ENST00000593074 COBLL1Q53SF7 1204 aa22.08■■□□□ 1.13
CLIP3-206ENST00000593074 DALRD3Q5D0E6 543 aaKnown RBP22.08■■□□□ 1.13
CLIP3-206ENST00000593074 TTI2Q6NXR4 508 aa22.08■■□□□ 1.13
CLIP3-206ENST00000593074 SYT10Q6XYQ8 523 aa22.08■■□□□ 1.13
CLIP3-206ENST00000593074 ANKRD7Q92527 254 aa22.08■■□□□ 1.13
CLIP3-206ENST00000593074 PNMA5Q96PV4 448 aa22.08■■□□□ 1.13
CLIP3-206ENST00000593074 NAP1L4Q99733 375 aaKnown RBP22.08■■□□□ 1.13
CLIP3-206ENST00000593074 NAA15Q9BXJ9 866 aaKnown RBP22.08■■□□□ 1.13
CLIP3-206ENST00000593074 DDX25Q9UHL0 483 aaKnown RBP22.08■■□□□ 1.13
CLIP3-206ENST00000593074 PHLPP2Q6ZVD8 1323 aa22.08■■□□□ 1.12
CLIP3-206ENST00000593074 GYPCP04921 128 aa22.08■■□□□ 1.12
CLIP3-206ENST00000593074 PPP1R2P41236 205 aa22.08■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms