RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 DDX20Q9UHI6 824 aaKnown RBP13.79□□□□□ -0.2
LIG3-213ENST00000590630 OGDHLQ9ULD0 1010 aa13.79□□□□□ -0.2
LIG3-213ENST00000590630 SOWAHBA6NEL2 793 aa13.78□□□□□ -0.2
LIG3-213ENST00000590630 SNAI1O95863 264 aaPredicted RBP13.78□□□□□ -0.2
LIG3-213ENST00000590630 CALML3P27482 149 aa13.78□□□□□ -0.2
LIG3-213ENST00000590630 C8orf34Q49A92 452 aa13.78□□□□□ -0.2
LIG3-213ENST00000590630 PRAMEF19Q5SWL8 479 aa13.78□□□□□ -0.2
LIG3-213ENST00000590630 LHX8Q68G74 356 aa13.78□□□□□ -0.2
LIG3-213ENST00000590630 RAB11FIP4Q86YS3 637 aa13.78□□□□□ -0.2
LIG3-213ENST00000590630 SAMD3Q8N6K7 520 aa13.78□□□□□ -0.2
LIG3-213ENST00000590630 DNERQ8NFT8 737 aa13.78□□□□□ -0.2
LIG3-213ENST00000590630 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.78□□□□□ -0.2
LIG3-213ENST00000590630 MAP3K20Q9NYL2 800 aaKnown RBP13.78□□□□□ -0.2
LIG3-213ENST00000590630 ASTN1O14525 1302 aa13.78□□□□□ -0.2
LIG3-213ENST00000590630 NID2Q14112 1375 aa13.78□□□□□ -0.2
LIG3-213ENST00000590630 CCDC196A0A1B0GTZ2 297 aa13.77□□□□□ -0.21
LIG3-213ENST00000590630 GOLGA8AA7E2F4 631 aa13.77□□□□□ -0.21
LIG3-213ENST00000590630 GOLGA8BA8MQT2 603 aa13.77□□□□□ -0.21
LIG3-213ENST00000590630 FARP2O94887 1054 aaPredicted RBP13.77□□□□□ -0.21
LIG3-213ENST00000590630 ZNF865P0CJ78 1059 aaPredicted RBP13.77□□□□□ -0.21
LIG3-213ENST00000590630 METAP2P50579 478 aaKnown RBP eCLIP13.77□□□□□ -0.21
LIG3-213ENST00000590630 ALDH5A1P51649 535 aaPredicted RBP13.77□□□□□ -0.21
LIG3-213ENST00000590630 EVCP57679 992 aa13.77□□□□□ -0.21
LIG3-213ENST00000590630 GHRHRQ02643 423 aa13.77□□□□□ -0.21
LIG3-213ENST00000590630 APOBRQ0VD83 1088 aa13.77□□□□□ -0.21
LIG3-213ENST00000590630 UBE2Q1Q7Z7E8 422 aa13.77□□□□□ -0.21
LIG3-213ENST00000590630 IL17RAQ96F46 866 aa13.77□□□□□ -0.21
LIG3-213ENST00000590630 MPHOSPH6Q99547 160 aaKnown RBP13.77□□□□□ -0.21
LIG3-213ENST00000590630 UPF3BQ9BZI7 483 aaKnown RBP13.77□□□□□ -0.21
LIG3-213ENST00000590630 NAP1L2Q9ULW6 460 aaPredicted RBP13.77□□□□□ -0.21
LIG3-213ENST00000590630 B4DLN1 442 aa13.76□□□□□ -0.21
LIG3-213ENST00000590630 OPLAHO14841 1288 aa13.76□□□□□ -0.21
LIG3-213ENST00000590630 SEC24BO95487 1268 aa13.76□□□□□ -0.21
LIG3-213ENST00000590630 AKR1A1P14550 325 aa13.76□□□□□ -0.21
LIG3-213ENST00000590630 HSD17B4P51659 736 aa13.76□□□□□ -0.21
LIG3-213ENST00000590630 MRPL12P52815 198 aaKnown RBP13.76□□□□□ -0.21
LIG3-213ENST00000590630 ACVR2BQ13705 512 aa13.76□□□□□ -0.21
LIG3-213ENST00000590630 CMTR1Q8N1G2 835 aaKnown RBP13.76□□□□□ -0.21
LIG3-213ENST00000590630 MORC4Q8TE76 937 aa13.76□□□□□ -0.21
LIG3-213ENST00000590630 PIBF1Q8WXW3 757 aa13.76□□□□□ -0.21
LIG3-213ENST00000590630 ZHX1Q9UKY1 873 aaPredicted RBP13.76□□□□□ -0.21
LIG3-213ENST00000590630 KIAA1217Q5T5P2 1943 aa13.76□□□□□ -0.21
LIG3-213ENST00000590630 CNTNAP5Q8WYK1 1306 aa13.75□□□□□ -0.21
LIG3-213ENST00000590630 CFBP00751 764 aa13.75□□□□□ -0.21
LIG3-213ENST00000590630 RARBP10826 455 aa13.75□□□□□ -0.21
LIG3-213ENST00000590630 TOB2Q14106 344 aaPredicted RBP13.75□□□□□ -0.21
LIG3-213ENST00000590630 CCDC82Q8N4S0 544 aa13.75□□□□□ -0.21
LIG3-213ENST00000590630 SYTL5Q8TDW5 730 aaPredicted RBP13.75□□□□□ -0.21
LIG3-213ENST00000590630 PURBQ96QR8 312 aaKnown RBP13.75□□□□□ -0.21
LIG3-213ENST00000590630 KATNBL1Q9H079 304 aa13.75□□□□□ -0.21
LIG3-213ENST00000590630 FAM217BQ9NTX9 383 aaPredicted RBP13.75□□□□□ -0.21
LIG3-213ENST00000590630 PDRG1Q9NUG6 133 aa13.75□□□□□ -0.21
LIG3-213ENST00000590630 FAM184BQ9ULE4 1060 aa13.75□□□□□ -0.21
LIG3-213ENST00000590630 CEP290O15078 2479 aa13.74□□□□□ -0.21
LIG3-213ENST00000590630 EDNRBP24530 442 aa13.74□□□□□ -0.21
LIG3-213ENST00000590630 CDC27P30260 824 aa13.74□□□□□ -0.21
LIG3-213ENST00000590630 FUT2Q10981 343 aa13.74□□□□□ -0.21
LIG3-213ENST00000590630 CCDC144BQ3MJ40 725 aa13.74□□□□□ -0.21
LIG3-213ENST00000590630 NECAB2Q7Z6G3 386 aa13.74□□□□□ -0.21
LIG3-213ENST00000590630 ARRDC4Q8NCT1 418 aa13.74□□□□□ -0.21
LIG3-213ENST00000590630 NSUN6Q8TEA1 469 aaKnown RBP13.74□□□□□ -0.21
LIG3-213ENST00000590630 TBC1D5Q92609 795 aa13.74□□□□□ -0.21
LIG3-213ENST00000590630 ALDH8A1Q9H2A2 487 aaPredicted RBP13.74□□□□□ -0.21
LIG3-213ENST00000590630 VTA1Q9NP79 307 aa13.74□□□□□ -0.21
LIG3-213ENST00000590630 GTF3C3Q9Y5Q9 886 aa13.74□□□□□ -0.21
LIG3-213ENST00000590630 GCOM1H8Y6P7 765 aaPredicted RBP13.73□□□□□ -0.21
LIG3-213ENST00000590630 hCG_1984214I3L0E3 225 aa13.73□□□□□ -0.21
LIG3-213ENST00000590630 DNM1LO00429 736 aa13.73□□□□□ -0.21
LIG3-213ENST00000590630 POLR2MP0CAP2 368 aa13.73□□□□□ -0.21
LIG3-213ENST00000590630 PDIA3P30101 505 aaKnown RBP13.73□□□□□ -0.21
LIG3-213ENST00000590630 ADD1P35611 737 aaKnown RBP13.73□□□□□ -0.21
LIG3-213ENST00000590630 MNX1P50219 401 aaPredicted RBP13.73□□□□□ -0.21
LIG3-213ENST00000590630 PDE4DQ08499 809 aa13.73□□□□□ -0.21
LIG3-213ENST00000590630 ANO1Q5XXA6 986 aa13.73□□□□□ -0.21
LIG3-213ENST00000590630 ZNF713Q8N859 430 aaPredicted RBP13.73□□□□□ -0.21
LIG3-213ENST00000590630 ZNF274Q96GC6 653 aaPredicted RBP13.73□□□□□ -0.21
LIG3-213ENST00000590630 PAWRQ96IZ0 340 aaKnown RBP13.73□□□□□ -0.21
LIG3-213ENST00000590630 IWS1Q96ST2 819 aa13.73□□□□□ -0.21
LIG3-213ENST00000590630 RMDN3Q96TC7 470 aa13.73□□□□□ -0.21
LIG3-213ENST00000590630 XPNPEP3Q9NQH7 507 aa13.73□□□□□ -0.21
LIG3-213ENST00000590630 COL20A1Q9P218 1284 aa13.73□□□□□ -0.21
LIG3-213ENST00000590630 RBM27Q9P2N5 1060 aaKnown RBP13.73□□□□□ -0.21
LIG3-213ENST00000590630 hCG_1642624A0A1W2PR95 340 aa13.72□□□□□ -0.21
LIG3-213ENST00000590630 PIK3CDO00329 1044 aa13.72□□□□□ -0.21
LIG3-213ENST00000590630 DUSP11O75319 330 aaKnown RBP13.72□□□□□ -0.21
LIG3-213ENST00000590630 HOXA13P31271 388 aaPredicted RBP13.72□□□□□ -0.21
LIG3-213ENST00000590630 ANKRD1Q15327 319 aa13.72□□□□□ -0.21
LIG3-213ENST00000590630 ARHGEF16Q5VV41 709 aa13.72□□□□□ -0.21
LIG3-213ENST00000590630 HEATR3Q7Z4Q2 680 aa13.72□□□□□ -0.21
LIG3-213ENST00000590630 TEX2Q8IWB9 1127 aa13.72□□□□□ -0.21
LIG3-213ENST00000590630 FBXO16Q8IX29 292 aaPredicted RBP13.72□□□□□ -0.21
LIG3-213ENST00000590630 DIS3LQ8TF46 1054 aaKnown RBP13.72□□□□□ -0.21
LIG3-213ENST00000590630 TAAR1Q96RJ0 339 aa13.72□□□□□ -0.21
LIG3-213ENST00000590630 HTATIP2Q9BUP3 242 aa13.72□□□□□ -0.21
LIG3-213ENST00000590630 PXMP2Q9NR77 195 aa13.72□□□□□ -0.21
LIG3-213ENST00000590630 DDX49Q9Y6V7 483 aaKnown RBP13.72□□□□□ -0.21
LIG3-213ENST00000590630 V9GY48 417 aaPredicted RBP13.72□□□□□ -0.21
LIG3-213ENST00000590630 ALPK3Q96L96 1907 aa13.72□□□□□ -0.21
LIG3-213ENST00000590630 KBTBD13C9JR72 458 aa13.71□□□□□ -0.21
LIG3-213ENST00000590630 TNFAIP2Q03169 654 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms