RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 PAK1Q13153 545 aa11.95□□□□□ -0.5
ZNF540-208ENST00000589857 TBX2Q13207 712 aaPredicted RBP11.95□□□□□ -0.5
ZNF540-208ENST00000589857 CUL4BQ13620 913 aa11.95□□□□□ -0.5
ZNF540-208ENST00000589857 TTLL12Q14166 644 aaPredicted RBP11.95□□□□□ -0.5
ZNF540-208ENST00000589857 DOK7Q18PE1 504 aa11.95□□□□□ -0.5
ZNF540-208ENST00000589857 TMEM266Q2M3C6 531 aa11.95□□□□□ -0.5
ZNF540-208ENST00000589857 EARS2Q5JPH6 523 aaKnown RBP11.95□□□□□ -0.5
ZNF540-208ENST00000589857 ANGEL2Q5VTE6 544 aaKnown RBP11.95□□□□□ -0.5
ZNF540-208ENST00000589857 MCTP2Q6DN12 878 aa11.95□□□□□ -0.5
ZNF540-208ENST00000589857 PDXDC2PQ6P474 469 aa11.95□□□□□ -0.5
ZNF540-208ENST00000589857 HHIPL2Q6UWX4 724 aa11.95□□□□□ -0.5
ZNF540-208ENST00000589857 HOMER1Q86YM7 354 aa11.95□□□□□ -0.5
ZNF540-208ENST00000589857 CNGA4Q8IV77 575 aa11.95□□□□□ -0.5
ZNF540-208ENST00000589857 ZNF592Q92610 1267 aa11.95□□□□□ -0.5
ZNF540-208ENST00000589857 PPP1R13BQ96KQ4 1090 aa11.95□□□□□ -0.5
ZNF540-208ENST00000589857 BAG1Q99933 345 aaPredicted RBP11.95□□□□□ -0.5
ZNF540-208ENST00000589857 MRIQ9BWK5 157 aa11.95□□□□□ -0.5
ZNF540-208ENST00000589857 TMX1Q9H3N1 280 aa11.95□□□□□ -0.5
ZNF540-208ENST00000589857 DISC1Q9NRI5 854 aa11.95□□□□□ -0.5
ZNF540-208ENST00000589857 CGNQ9P2M7 1197 aaKnown RBP11.95□□□□□ -0.5
ZNF540-208ENST00000589857 POLLQ9UGP5 575 aa11.95□□□□□ -0.5
ZNF540-208ENST00000589857 DAGLAQ9Y4D2 1042 aa11.95□□□□□ -0.5
ZNF540-208ENST00000589857 NAV1Q8NEY1 1877 aa11.94□□□□□ -0.5
ZNF540-208ENST00000589857 SHTN1A0MZ66 631 aa11.94□□□□□ -0.5
ZNF540-208ENST00000589857 AKR1B15C9JRZ8 316 aaPredicted RBP11.94□□□□□ -0.5
ZNF540-208ENST00000589857 RPN1P04843 607 aaKnown RBP11.94□□□□□ -0.5
ZNF540-208ENST00000589857 OR52Z1P0C646 297 aa11.94□□□□□ -0.5
ZNF540-208ENST00000589857 ZNF280AP59817 542 aaPredicted RBP11.94□□□□□ -0.5
ZNF540-208ENST00000589857 RBM10P98175 930 aaKnown RBP11.94□□□□□ -0.5
ZNF540-208ENST00000589857 ARID5BQ14865 1188 aa11.94□□□□□ -0.5
ZNF540-208ENST00000589857 GPATCH4Q5T3I0 446 aaKnown RBP11.94□□□□□ -0.5
ZNF540-208ENST00000589857 CDKAL1Q5VV42 579 aa11.94□□□□□ -0.5
ZNF540-208ENST00000589857 RSBN1LQ6PCB5 846 aaPredicted RBP11.94□□□□□ -0.5
ZNF540-208ENST00000589857 FBXO46Q6PJ61 603 aaPredicted RBP11.94□□□□□ -0.5
ZNF540-208ENST00000589857 PODNQ7Z5L7 613 aa11.94□□□□□ -0.5
ZNF540-208ENST00000589857 NEK8Q86SG6 692 aa11.94□□□□□ -0.5
ZNF540-208ENST00000589857 RASAL3Q86YV0 1011 aa11.94□□□□□ -0.5
ZNF540-208ENST00000589857 FAM114A1Q8IWE2 563 aa11.94□□□□□ -0.5
ZNF540-208ENST00000589857 GRAMD1CQ8IYS0 662 aa11.94□□□□□ -0.5
ZNF540-208ENST00000589857 REXO1Q8N1G1 1221 aaKnown RBP11.94□□□□□ -0.5
ZNF540-208ENST00000589857 STAG2Q8N3U4 1231 aa11.94□□□□□ -0.5
ZNF540-208ENST00000589857 C4orf32Q8N8J7 132 aa11.94□□□□□ -0.5
ZNF540-208ENST00000589857 GPKOWQ92917 476 aaPredicted RBP eCLIP11.94□□□□□ -0.5
ZNF540-208ENST00000589857 TEKT1Q969V4 418 aa11.94□□□□□ -0.5
ZNF540-208ENST00000589857 IQCDQ96DY2 449 aa11.94□□□□□ -0.5
ZNF540-208ENST00000589857 CALML4Q96GE6 196 aa11.94□□□□□ -0.5
ZNF540-208ENST00000589857 EHD4Q9H223 541 aa11.94□□□□□ -0.5
ZNF540-208ENST00000589857 LRRC37AA6NMS7 1700 aa11.94□□□□□ -0.5
ZNF540-208ENST00000589857 BICDL2A1A5D9 508 aa11.93□□□□□ -0.5
ZNF540-208ENST00000589857 SMCO2A6NFE2 343 aa11.93□□□□□ -0.5
ZNF540-208ENST00000589857 PSMA7O14818 248 aa11.93□□□□□ -0.5
ZNF540-208ENST00000589857 SLU7O95391 586 aaKnown RBP11.93□□□□□ -0.5
ZNF540-208ENST00000589857 TTLL1O95922 423 aa11.93□□□□□ -0.5
ZNF540-208ENST00000589857 ADCY7P51828 1080 aa11.93□□□□□ -0.5
ZNF540-208ENST00000589857 INHBEP58166 350 aa11.93□□□□□ -0.5
ZNF540-208ENST00000589857 GTF2IP78347 998 aa11.93□□□□□ -0.5
ZNF540-208ENST00000589857 HDLBPQ00341 1268 aaKnown RBP11.93□□□□□ -0.5
ZNF540-208ENST00000589857 NR1I3Q14994 352 aa11.93□□□□□ -0.5
ZNF540-208ENST00000589857 E4F1Q66K89 784 aaPredicted RBP11.93□□□□□ -0.5
ZNF540-208ENST00000589857 USP49Q70CQ1 688 aa11.93□□□□□ -0.5
ZNF540-208ENST00000589857 ARMC9Q7Z3E5 817 aa11.93□□□□□ -0.5
ZNF540-208ENST00000589857 TEX2Q8IWB9 1127 aa11.93□□□□□ -0.5
ZNF540-208ENST00000589857 ANKRD7Q92527 254 aa11.93□□□□□ -0.5
ZNF540-208ENST00000589857 DHX36Q9H2U1 1008 aaKnown RBP11.93□□□□□ -0.5
ZNF540-208ENST00000589857 RIOX1Q9H6W3 641 aa11.93□□□□□ -0.5
ZNF540-208ENST00000589857 MYOZ2Q9NPC6 264 aa11.93□□□□□ -0.5
ZNF540-208ENST00000589857 TRMT1Q9NXH9 659 aaKnown RBP11.93□□□□□ -0.5
ZNF540-208ENST00000589857 MTMR4Q9NYA4 1195 aa11.93□□□□□ -0.5
ZNF540-208ENST00000589857 MAGEC2Q9UBF1 373 aaPredicted RBP11.93□□□□□ -0.5
ZNF540-208ENST00000589857 LIMA1Q9UHB6 759 aaKnown RBP11.93□□□□□ -0.5
ZNF540-208ENST00000589857 SERPINB13Q9UIV8 391 aa11.93□□□□□ -0.5
ZNF540-208ENST00000589857 PDE4DIPQ5VU43 2346 aa11.92□□□□□ -0.5
ZNF540-208ENST00000589857 A0A087X0B3 334 aa11.92□□□□□ -0.5
ZNF540-208ENST00000589857 PPP1R3GB7ZBB8 358 aa11.92□□□□□ -0.5
ZNF540-208ENST00000589857 FKTNO75072 461 aa11.92□□□□□ -0.5
ZNF540-208ENST00000589857 GCFC2P16383 781 aaKnown RBP11.92□□□□□ -0.5
ZNF540-208ENST00000589857 EEF1GP26641 437 aaKnown RBP11.92□□□□□ -0.5
ZNF540-208ENST00000589857 TM4SF4P48230 202 aa11.92□□□□□ -0.5
ZNF540-208ENST00000589857 ETF1P62495 437 aaKnown RBP11.92□□□□□ -0.5
ZNF540-208ENST00000589857 TUBB2AQ13885 445 aa11.92□□□□□ -0.5
ZNF540-208ENST00000589857 INF2Q27J81 1249 aa11.92□□□□□ -0.5
ZNF540-208ENST00000589857 KLHL10Q6JEL2 608 aa11.92□□□□□ -0.5
ZNF540-208ENST00000589857 SLC51AQ86UW1 340 aa11.92□□□□□ -0.5
ZNF540-208ENST00000589857 CABP7Q86V35 215 aa11.92□□□□□ -0.5
ZNF540-208ENST00000589857 SLC44A5Q8NCS7 719 aa11.92□□□□□ -0.5
ZNF540-208ENST00000589857 ZNF296Q8WUU4 475 aaPredicted RBP11.92□□□□□ -0.5
ZNF540-208ENST00000589857 CEP95Q96GE4 821 aa11.92□□□□□ -0.5
ZNF540-208ENST00000589857 TUBB2BQ9BVA1 445 aa11.92□□□□□ -0.5
ZNF540-208ENST00000589857 TRIM34Q9BYJ4 488 aa11.92□□□□□ -0.5
ZNF540-208ENST00000589857 THAP9Q9H5L6 903 aa11.92□□□□□ -0.5
ZNF540-208ENST00000589857 STK17AQ9UEE5 414 aa11.92□□□□□ -0.5
ZNF540-208ENST00000589857 TTF2Q9UNY4 1162 aaKnown RBP11.92□□□□□ -0.5
ZNF540-208ENST00000589857 CTNND2Q9UQB3 1225 aa11.92□□□□□ -0.5
ZNF540-208ENST00000589857 IGKV6D-41A0A0C4DH26 115 aa11.91□□□□□ -0.5
ZNF540-208ENST00000589857 LRRC10BA6NIK2 292 aa11.91□□□□□ -0.5
ZNF540-208ENST00000589857 GPR25O00155 361 aa11.91□□□□□ -0.5
ZNF540-208ENST00000589857 FGFR1OPO95684 399 aaKnown RBP11.91□□□□□ -0.5
ZNF540-208ENST00000589857 EGFRP00533 1210 aa11.91□□□□□ -0.5
ZNF540-208ENST00000589857 SNHG28P0DPA3 235 aa11.91□□□□□ -0.5
ZNF540-208ENST00000589857 MRPL12P52815 198 aaKnown RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms