RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 TRPV6Q9H1D0 765 aa16.49■□□□□ 0.23
VMP1-209ENST00000588915 ALDH8A1Q9H2A2 487 aaPredicted RBP16.49■□□□□ 0.23
VMP1-209ENST00000588915 SLC28A3Q9HAS3 691 aa16.49■□□□□ 0.23
VMP1-209ENST00000588915 CXXC1Q9P0U4 656 aaPredicted RBP16.49■□□□□ 0.23
VMP1-209ENST00000588915 MYO9BQ13459 2157 aa16.48■□□□□ 0.23
VMP1-209ENST00000588915 KPNA6O60684 536 aa16.48■□□□□ 0.23
VMP1-209ENST00000588915 NT5C2P49902 561 aa16.48■□□□□ 0.23
VMP1-209ENST00000588915 MCMDC2Q4G0Z9 681 aa16.48■□□□□ 0.23
VMP1-209ENST00000588915 BRDTQ58F21 947 aaPredicted RBP16.48■□□□□ 0.23
VMP1-209ENST00000588915 ANKRD45Q5TZF3 282 aa16.48■□□□□ 0.23
VMP1-209ENST00000588915 TTBK2Q6IQ55 1244 aa16.48■□□□□ 0.23
VMP1-209ENST00000588915 DNERQ8NFT8 737 aa16.48■□□□□ 0.23
VMP1-209ENST00000588915 CHMP4CQ96CF2 233 aa16.48■□□□□ 0.23
VMP1-209ENST00000588915 PRDM12Q9H4Q4 367 aa16.48■□□□□ 0.23
VMP1-209ENST00000588915 UMODL1Q5DID0 1318 aa16.47■□□□□ 0.23
VMP1-209ENST00000588915 WDR19Q8NEZ3 1342 aa16.47■□□□□ 0.23
VMP1-209ENST00000588915 PTPDC1A2A3K4 754 aa16.47■□□□□ 0.23
VMP1-209ENST00000588915 B4DLN1 442 aa16.47■□□□□ 0.23
VMP1-209ENST00000588915 SLC16A2P36021 539 aa16.47■□□□□ 0.23
VMP1-209ENST00000588915 MRPL12P52815 198 aaKnown RBP16.47■□□□□ 0.23
VMP1-209ENST00000588915 PDE1AP54750 535 aa16.47■□□□□ 0.23
VMP1-209ENST00000588915 CCL23P55773 120 aa16.47■□□□□ 0.23
VMP1-209ENST00000588915 PURAQ00577 322 aaKnown RBP16.47■□□□□ 0.23
VMP1-209ENST00000588915 TMEM63BQ5T3F8 832 aa16.47■□□□□ 0.23
VMP1-209ENST00000588915 OTOP2Q7RTS6 562 aa16.47■□□□□ 0.23
VMP1-209ENST00000588915 RGS22Q8NE09 1264 aa16.47■□□□□ 0.23
VMP1-209ENST00000588915 PURBQ96QR8 312 aaKnown RBP16.47■□□□□ 0.23
VMP1-209ENST00000588915 WNT8AQ9H1J5 351 aa16.47■□□□□ 0.23
VMP1-209ENST00000588915 TOMM22Q9NS69 142 aa16.47■□□□□ 0.23
VMP1-209ENST00000588915 MTMR7Q9Y216 660 aa16.47■□□□□ 0.23
VMP1-209ENST00000588915 SLC4A7Q9Y6M7 1214 aa16.47■□□□□ 0.23
VMP1-209ENST00000588915 LRRC37A2A6NM11 1700 aa16.47■□□□□ 0.23
VMP1-209ENST00000588915 NFIBO00712 420 aa16.46■□□□□ 0.23
VMP1-209ENST00000588915 SNHG28P0DPA3 235 aa16.46■□□□□ 0.23
VMP1-209ENST00000588915 PDHBP11177 359 aa16.46■□□□□ 0.23
VMP1-209ENST00000588915 EDNRBP24530 442 aa16.46■□□□□ 0.23
VMP1-209ENST00000588915 PSMC6P62333 389 aa16.46■□□□□ 0.23
VMP1-209ENST00000588915 RNF207Q6ZRF8 634 aa16.46■□□□□ 0.23
VMP1-209ENST00000588915 RASGRP2Q7LDG7 609 aa16.46■□□□□ 0.23
VMP1-209ENST00000588915 CLEC4DQ8WXI8 215 aa16.46■□□□□ 0.23
VMP1-209ENST00000588915 MTG1Q9BT17 334 aaPredicted RBP16.46■□□□□ 0.23
VMP1-209ENST00000588915 NKX2-4Q9H2Z4 354 aa16.46■□□□□ 0.23
VMP1-209ENST00000588915 GPHNQ9NQX3 736 aaPredicted RBP16.46■□□□□ 0.23
VMP1-209ENST00000588915 THEGQ9P2T0 379 aa16.46■□□□□ 0.23
VMP1-209ENST00000588915 PCDHA11Q9Y5I1 949 aa16.46■□□□□ 0.23
VMP1-209ENST00000588915 DDX49Q9Y6V7 483 aaKnown RBP16.46■□□□□ 0.23
VMP1-209ENST00000588915 RAD50Q92878 1312 aa16.45■□□□□ 0.22
VMP1-209ENST00000588915 TNFRSF10AO00220 468 aa16.45■□□□□ 0.22
VMP1-209ENST00000588915 HSPD1P10809 573 aaKnown RBP16.45■□□□□ 0.22
VMP1-209ENST00000588915 RFC2P35250 354 aa16.45■□□□□ 0.22
VMP1-209ENST00000588915 PTPN11Q06124 597 aaPredicted RBP16.45■□□□□ 0.22
VMP1-209ENST00000588915 ZNF543Q08ER8 600 aa16.45■□□□□ 0.22
VMP1-209ENST00000588915 ADGRE1Q14246 886 aa16.45■□□□□ 0.22
VMP1-209ENST00000588915 RRP12Q5JTH9 1297 aaKnown RBP16.45■□□□□ 0.22
VMP1-209ENST00000588915 SCFD2Q8WU76 684 aa16.45■□□□□ 0.22
VMP1-209ENST00000588915 GPCPD1Q9NPB8 672 aa16.45■□□□□ 0.22
VMP1-209ENST00000588915 YBX2Q9Y2T7 364 aaKnown RBP16.45■□□□□ 0.22
VMP1-209ENST00000588915 TNKSO95271 1327 aa16.45■□□□□ 0.22
VMP1-209ENST00000588915 CHD9Q3L8U1 2897 aa16.44■□□□□ 0.22
VMP1-209ENST00000588915 A6NJR5 290 aa16.44■□□□□ 0.22
VMP1-209ENST00000588915 PTGS1P23219 599 aa16.44■□□□□ 0.22
VMP1-209ENST00000588915 CALML3P27482 149 aa16.44■□□□□ 0.22
VMP1-209ENST00000588915 RPS6P62753 249 aaKnown RBP16.44■□□□□ 0.22
VMP1-209ENST00000588915 MRPS5P82675 430 aaKnown RBP16.44■□□□□ 0.22
VMP1-209ENST00000588915 PDE4DQ08499 809 aa16.44■□□□□ 0.22
VMP1-209ENST00000588915 HDAC1Q13547 482 aaPredicted RBP16.44■□□□□ 0.22
VMP1-209ENST00000588915 CCDC178Q5BJE1 867 aa16.44■□□□□ 0.22
VMP1-209ENST00000588915 GPATCH4Q5T3I0 446 aaKnown RBP16.44■□□□□ 0.22
VMP1-209ENST00000588915 NFRKBQ6P4R8 1299 aa16.44■□□□□ 0.22
VMP1-209ENST00000588915 MFSD6Q6ZSS7 791 aa16.44■□□□□ 0.22
VMP1-209ENST00000588915 OR6J1Q8NGC5 347 aa16.44■□□□□ 0.22
VMP1-209ENST00000588915 VWCEQ96DN2 955 aa16.44■□□□□ 0.22
VMP1-209ENST00000588915 FAM227BQ96M60 508 aa16.44■□□□□ 0.22
VMP1-209ENST00000588915 ASB2Q96Q27 587 aa16.44■□□□□ 0.22
VMP1-209ENST00000588915 TSPYL2Q9H2G4 693 aaPredicted RBP16.44■□□□□ 0.22
VMP1-209ENST00000588915 RNF41Q9H4P4 317 aaPredicted RBP16.44■□□□□ 0.22
VMP1-209ENST00000588915 LCTP09848 1927 aa16.44■□□□□ 0.22
VMP1-209ENST00000588915 A0A0D9SFI3 127 aa16.43■□□□□ 0.22
VMP1-209ENST00000588915 PITPNM1O00562 1244 aa16.43■□□□□ 0.22
VMP1-209ENST00000588915 MYL3P08590 195 aa16.43■□□□□ 0.22
VMP1-209ENST00000588915 ACTN1P12814 892 aa16.43■□□□□ 0.22
VMP1-209ENST00000588915 ATP2A2P16615 1042 aaKnown RBP16.43■□□□□ 0.22
VMP1-209ENST00000588915 MFAP1P55081 439 aaKnown RBP16.43■□□□□ 0.22
VMP1-209ENST00000588915 PPP2R5BQ15173 497 aa16.43■□□□□ 0.22
VMP1-209ENST00000588915 PPP2R2DQ66LE6 453 aa16.43■□□□□ 0.22
VMP1-209ENST00000588915 DGKHQ86XP1 1220 aa16.43■□□□□ 0.22
VMP1-209ENST00000588915 PHOSPHO2Q8TCD6 241 aa16.43■□□□□ 0.22
VMP1-209ENST00000588915 PPM1EQ8WY54 764 aa16.43■□□□□ 0.22
VMP1-209ENST00000588915 SCLYQ96I15 445 aa16.43■□□□□ 0.22
VMP1-209ENST00000588915 TRMT13Q9NUP7 481 aaKnown RBP16.43■□□□□ 0.22
VMP1-209ENST00000588915 FRMPD2Q68DX3 1309 aaPredicted RBP16.43■□□□□ 0.22
VMP1-209ENST00000588915 CYP2C9P11712 490 aa16.42■□□□□ 0.22
VMP1-209ENST00000588915 POU3F3P20264 500 aaPredicted RBP16.42■□□□□ 0.22
VMP1-209ENST00000588915 IGFBP4P22692 258 aa16.42■□□□□ 0.22
VMP1-209ENST00000588915 TTLL4Q14679 1199 aa16.42■□□□□ 0.22
VMP1-209ENST00000588915 NBPF20Q3BBV1 942 aa16.42■□□□□ 0.22
VMP1-209ENST00000588915 SLC30A10Q6XR72 485 aa16.42■□□□□ 0.22
VMP1-209ENST00000588915 ESR2Q92731 530 aa16.42■□□□□ 0.22
VMP1-209ENST00000588915 CCDC171Q6TFL3 1326 aa16.42■□□□□ 0.22
VMP1-209ENST00000588915 SCN10AQ9Y5Y9 1956 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms