RNA–Protein interactions for RNA: ENST00000588667.5

ATG4D-208, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,619 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-208ENST00000588667 LARP6Q9BRS8 491 aaKnown RBP23.25■■□□□ 1.31
ATG4D-208ENST00000588667 FOXD4L1Q9NU39 408 aa23.25■■□□□ 1.31
ATG4D-208ENST00000588667 PRKAR2AP13861 404 aaKnown RBP23.24■■□□□ 1.31
ATG4D-208ENST00000588667 CCT2P78371 535 aaKnown RBP23.24■■□□□ 1.31
ATG4D-208ENST00000588667 CNTN2Q02246 1040 aa23.24■■□□□ 1.31
ATG4D-208ENST00000588667 TRIM32Q13049 653 aa23.24■■□□□ 1.31
ATG4D-208ENST00000588667 SLC30A10Q6XR72 485 aa23.24■■□□□ 1.31
ATG4D-208ENST00000588667 MSL3Q8N5Y2 521 aaKnown RBP23.24■■□□□ 1.31
ATG4D-208ENST00000588667 FGD4Q96M96 766 aa23.24■■□□□ 1.31
ATG4D-208ENST00000588667 RPS6P62753 249 aaKnown RBP23.23■■□□□ 1.31
ATG4D-208ENST00000588667 MTFR1Q15390 333 aa23.23■■□□□ 1.31
ATG4D-208ENST00000588667 CHMP5Q9NZZ3 219 aa23.23■■□□□ 1.31
ATG4D-208ENST00000588667 TPCN1Q9ULQ1 816 aa23.23■■□□□ 1.31
ATG4D-208ENST00000588667 CIZ1Q9ULV3 898 aaPredicted RBP23.23■■□□□ 1.31
ATG4D-208ENST00000588667 CCDC85CA6NKD9 419 aa23.22■■□□□ 1.31
ATG4D-208ENST00000588667 OPLAHO14841 1288 aa23.22■■□□□ 1.31
ATG4D-208ENST00000588667 CCL5P13501 91 aa23.22■■□□□ 1.31
ATG4D-208ENST00000588667 CYP2C19P33261 490 aa23.22■■□□□ 1.31
ATG4D-208ENST00000588667 MAMDC4Q6UXC1 1216 aa23.22■■□□□ 1.31
ATG4D-208ENST00000588667 TINF2Q9BSI4 451 aa23.22■■□□□ 1.31
ATG4D-208ENST00000588667 NCOA5Q9HCD5 579 aaKnown RBP23.22■■□□□ 1.31
ATG4D-208ENST00000588667 hCG_1642624A0A1W2PR95 340 aa23.22■■□□□ 1.31
ATG4D-208ENST00000588667 MYCP01106 439 aaPredicted RBP23.22■■□□□ 1.31
ATG4D-208ENST00000588667 CALML3P27482 149 aa23.22■■□□□ 1.31
ATG4D-208ENST00000588667 DDIT3P35638 169 aa23.22■■□□□ 1.31
ATG4D-208ENST00000588667 GHRHRQ02643 423 aa23.22■■□□□ 1.31
ATG4D-208ENST00000588667 CACNB2Q08289 660 aaPredicted RBP23.22■■□□□ 1.31
ATG4D-208ENST00000588667 RPTORQ8N122 1335 aa23.22■■□□□ 1.31
ATG4D-208ENST00000588667 SYNGAP1Q96PV0 1343 aa23.22■■□□□ 1.31
ATG4D-208ENST00000588667 SOWAHBA6NEL2 793 aa23.21■■□□□ 1.31
ATG4D-208ENST00000588667 IFNAR1P17181 557 aa23.21■■□□□ 1.31
ATG4D-208ENST00000588667 STK3Q13188 491 aa23.21■■□□□ 1.31
ATG4D-208ENST00000588667 NTRK3Q16288 839 aa23.21■■□□□ 1.31
ATG4D-208ENST00000588667 SAMD3Q8N6K7 520 aa23.21■■□□□ 1.31
ATG4D-208ENST00000588667 UNC93B1Q9H1C4 597 aa23.21■■□□□ 1.31
ATG4D-208ENST00000588667 HMX1Q9NP08 348 aaPredicted RBP23.21■■□□□ 1.31
ATG4D-208ENST00000588667 MAP3K20Q9NYL2 800 aaKnown RBP23.21■■□□□ 1.31
ATG4D-208ENST00000588667 RBM27Q9P2N5 1060 aaKnown RBP23.21■■□□□ 1.31
ATG4D-208ENST00000588667 ADD3Q9UEY8 706 aaKnown RBP23.21■■□□□ 1.31
ATG4D-208ENST00000588667 V9GY48 417 aaPredicted RBP23.21■■□□□ 1.31
ATG4D-208ENST00000588667 ASTN1O14525 1302 aa23.2■■□□□ 1.3
ATG4D-208ENST00000588667 RNF208Q9H0X6 261 aa23.2■■□□□ 1.3
ATG4D-208ENST00000588667 hCG_1984214I3L0E3 225 aa23.19■■□□□ 1.3
ATG4D-208ENST00000588667 CPLX1O14810 134 aa23.19■■□□□ 1.3
ATG4D-208ENST00000588667 PFKFB2O60825 505 aa23.19■■□□□ 1.3
ATG4D-208ENST00000588667 CFBP00751 764 aa23.19■■□□□ 1.3
ATG4D-208ENST00000588667 CYBAP13498 195 aa23.19■■□□□ 1.3
ATG4D-208ENST00000588667 HSD17B4P51659 736 aa23.19■■□□□ 1.3
ATG4D-208ENST00000588667 ME3Q16798 604 aa23.19■■□□□ 1.3
ATG4D-208ENST00000588667 CPLX2Q6PUV4 134 aaKnown RBP23.19■■□□□ 1.3
ATG4D-208ENST00000588667 HEATR3Q7Z4Q2 680 aa23.19■■□□□ 1.3
ATG4D-208ENST00000588667 ZNF713Q8N859 430 aaPredicted RBP23.19■■□□□ 1.3
ATG4D-208ENST00000588667 TBC1D5Q92609 795 aa23.19■■□□□ 1.3
ATG4D-208ENST00000588667 TMEM106CQ9BVX2 250 aa23.19■■□□□ 1.3
ATG4D-208ENST00000588667 RNF26Q9BY78 433 aaPredicted RBP23.19■■□□□ 1.3
ATG4D-208ENST00000588667 PAK6Q9NQU5 681 aaPredicted RBP23.19■■□□□ 1.3
ATG4D-208ENST00000588667 NRBP1Q9UHY1 535 aa23.19■■□□□ 1.3
ATG4D-208ENST00000588667 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.19■■□□□ 1.3
ATG4D-208ENST00000588667 LOC102724159A0A0B4J2E5 919 aa23.19■■□□□ 1.3
ATG4D-208ENST00000588667 ASB14A6NK59 587 aa23.19■■□□□ 1.3
ATG4D-208ENST00000588667 SCRN1Q12765 414 aa23.19■■□□□ 1.3
ATG4D-208ENST00000588667 PWP2Q15269 919 aaKnown RBP23.19■■□□□ 1.3
ATG4D-208ENST00000588667 DNERQ8NFT8 737 aa23.19■■□□□ 1.3
ATG4D-208ENST00000588667 SYTL5Q8TDW5 730 aaPredicted RBP23.19■■□□□ 1.3
ATG4D-208ENST00000588667 PURBQ96QR8 312 aaKnown RBP23.19■■□□□ 1.3
ATG4D-208ENST00000588667 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.19■■□□□ 1.3
ATG4D-208ENST00000588667 LRRC37A2A6NM11 1700 aa23.18■■□□□ 1.3
ATG4D-208ENST00000588667 PRPF3O43395 683 aaKnown RBP23.18■■□□□ 1.3
ATG4D-208ENST00000588667 LARGE1O95461 756 aa23.18■■□□□ 1.3
ATG4D-208ENST00000588667 ALDH5A1P51649 535 aaPredicted RBP23.18■■□□□ 1.3
ATG4D-208ENST00000588667 WWC2Q6AWC2 1192 aa23.18■■□□□ 1.3
ATG4D-208ENST00000588667 ARMCX2Q7L311 632 aa23.18■■□□□ 1.3
ATG4D-208ENST00000588667 GPKOWQ92917 476 aaPredicted RBP eCLIP23.18■■□□□ 1.3
ATG4D-208ENST00000588667 PHKBQ93100 1093 aa23.18■■□□□ 1.3
ATG4D-208ENST00000588667 CNPY2Q9Y2B0 182 aa23.18■■□□□ 1.3
ATG4D-208ENST00000588667 FRMPD3Q5JV73 1810 aa23.17■■□□□ 1.3
ATG4D-208ENST00000588667 GJB1P08034 283 aa23.17■■□□□ 1.3
ATG4D-208ENST00000588667 CCND3P30281 292 aaPredicted RBP23.17■■□□□ 1.3
ATG4D-208ENST00000588667 AKAP17AQ02040 695 aaKnown RBP23.17■■□□□ 1.3
ATG4D-208ENST00000588667 PFKFB3Q16875 520 aaPredicted RBP23.17■■□□□ 1.3
ATG4D-208ENST00000588667 PPP1R18Q6NYC8 613 aa23.17■■□□□ 1.3
ATG4D-208ENST00000588667 COL20A1Q9P218 1284 aa23.17■■□□□ 1.3
ATG4D-208ENST00000588667 GCOM1H8Y6P7 765 aaPredicted RBP23.16■■□□□ 1.3
ATG4D-208ENST00000588667 SNAI1O95863 264 aaPredicted RBP23.16■■□□□ 1.3
ATG4D-208ENST00000588667 POLR2MP0CAP2 368 aa23.16■■□□□ 1.3
ATG4D-208ENST00000588667 TRIM22Q8IYM9 498 aa23.16■■□□□ 1.3
ATG4D-208ENST00000588667 TRPV1Q8NER1 839 aa23.16■■□□□ 1.3
ATG4D-208ENST00000588667 SLC26A6Q9BXS9 759 aa23.16■■□□□ 1.3
ATG4D-208ENST00000588667 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.16■■□□□ 1.3
ATG4D-208ENST00000588667 CDKL5O76039 1030 aa23.15■■□□□ 1.3
ATG4D-208ENST00000588667 SCG2P13521 617 aa23.15■■□□□ 1.3
ATG4D-208ENST00000588667 CCDC83Q8IWF9 413 aa23.15■■□□□ 1.3
ATG4D-208ENST00000588667 MORC4Q8TE76 937 aa23.15■■□□□ 1.3
ATG4D-208ENST00000588667 GTF3C6Q969F1 213 aa23.15■■□□□ 1.3
ATG4D-208ENST00000588667 MPHOSPH6Q99547 160 aaKnown RBP23.15■■□□□ 1.3
ATG4D-208ENST00000588667 BARHL2Q9NY43 387 aa23.15■■□□□ 1.3
ATG4D-208ENST00000588667 HOXA13P31271 388 aaPredicted RBP23.15■■□□□ 1.3
ATG4D-208ENST00000588667 NAPAP54920 295 aa23.15■■□□□ 1.3
ATG4D-208ENST00000588667 PKN1Q16512 942 aa23.15■■□□□ 1.3
ATG4D-208ENST00000588667 PRAMEF19Q5SWL8 479 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms