RNA–Protein interactions for RNA: ENST00000588542.5

DDX39A-207, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 1,297 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-207ENST00000588542 MAF1Q9H063 256 aa23.4■■□□□ 1.34
DDX39A-207ENST00000588542 SYNGAP1Q96PV0 1343 aa23.39■■□□□ 1.34
DDX39A-207ENST00000588542 hCG_1642624A0A1W2PR95 340 aa23.39■■□□□ 1.33
DDX39A-207ENST00000588542 SNAI1O95863 264 aaPredicted RBP23.39■■□□□ 1.33
DDX39A-207ENST00000588542 EN2P19622 333 aaPredicted RBP23.39■■□□□ 1.33
DDX39A-207ENST00000588542 KIF2CQ99661 725 aa23.39■■□□□ 1.33
DDX39A-207ENST00000588542 CALML3P27482 149 aa23.38■■□□□ 1.33
DDX39A-207ENST00000588542 GJA8P48165 433 aa23.38■■□□□ 1.33
DDX39A-207ENST00000588542 GHRHRQ02643 423 aa23.38■■□□□ 1.33
DDX39A-207ENST00000588542 TRAF1Q13077 416 aa23.38■■□□□ 1.33
DDX39A-207ENST00000588542 U2AF1L4Q8WU68 220 aaKnown RBP23.38■■□□□ 1.33
DDX39A-207ENST00000588542 SHISA4Q96DD7 197 aa23.38■■□□□ 1.33
DDX39A-207ENST00000588542 ZNF274Q96GC6 653 aaPredicted RBP23.38■■□□□ 1.33
DDX39A-207ENST00000588542 DEFB118Q96PH6 123 aa23.38■■□□□ 1.33
DDX39A-207ENST00000588542 C22orf23Q9BZE7 217 aa23.38■■□□□ 1.33
DDX39A-207ENST00000588542 SEC63Q9UGP8 760 aaKnown RBP23.38■■□□□ 1.33
DDX39A-207ENST00000588542 SGPL1O95470 568 aa23.37■■□□□ 1.33
DDX39A-207ENST00000588542 RBM25P49756 843 aaKnown RBP23.37■■□□□ 1.33
DDX39A-207ENST00000588542 ARMCX2Q7L311 632 aa23.37■■□□□ 1.33
DDX39A-207ENST00000588542 MCF2L2Q86YR7 1114 aa23.37■■□□□ 1.33
DDX39A-207ENST00000588542 COL20A1Q9P218 1284 aa23.37■■□□□ 1.33
DDX39A-207ENST00000588542 DDX49Q9Y6V7 483 aaKnown RBP23.37■■□□□ 1.33
DDX39A-207ENST00000588542 MKI67P46013 3256 aaKnown RBP23.37■■□□□ 1.33
DDX39A-207ENST00000588542 CCDC196A0A1B0GTZ2 297 aa23.36■■□□□ 1.33
DDX39A-207ENST00000588542 ZNF865P0CJ78 1059 aaPredicted RBP23.36■■□□□ 1.33
DDX39A-207ENST00000588542 HSD17B4P51659 736 aa23.36■■□□□ 1.33
DDX39A-207ENST00000588542 AK2P54819 239 aa23.36■■□□□ 1.33
DDX39A-207ENST00000588542 CCT2P78371 535 aaKnown RBP23.36■■□□□ 1.33
DDX39A-207ENST00000588542 NTRK3Q16288 839 aa23.36■■□□□ 1.33
DDX39A-207ENST00000588542 LHX8Q68G74 356 aa23.36■■□□□ 1.33
DDX39A-207ENST00000588542 SYTL5Q8TDW5 730 aaPredicted RBP23.36■■□□□ 1.33
DDX39A-207ENST00000588542 MORC4Q8TE76 937 aa23.36■■□□□ 1.33
DDX39A-207ENST00000588542 KATNBL1Q9H079 304 aa23.36■■□□□ 1.33
DDX39A-207ENST00000588542 CRISPLD2Q9H0B8 497 aa23.36■■□□□ 1.33
DDX39A-207ENST00000588542 NCOA5Q9HCD5 579 aaKnown RBP23.36■■□□□ 1.33
DDX39A-207ENST00000588542 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.36■■□□□ 1.33
DDX39A-207ENST00000588542 NRBP1Q9UHY1 535 aa23.36■■□□□ 1.33
DDX39A-207ENST00000588542 CFBP00751 764 aa23.35■■□□□ 1.33
DDX39A-207ENST00000588542 RGS19P49795 217 aa23.35■■□□□ 1.33
DDX39A-207ENST00000588542 ALDH5A1P51649 535 aaPredicted RBP23.35■■□□□ 1.33
DDX39A-207ENST00000588542 NEK4P51957 841 aa23.35■■□□□ 1.33
DDX39A-207ENST00000588542 ADD3Q9UEY8 706 aaKnown RBP23.35■■□□□ 1.33
DDX39A-207ENST00000588542 V9GY48 417 aaPredicted RBP23.35■■□□□ 1.33
DDX39A-207ENST00000588542 KIAA1217Q5T5P2 1943 aa23.34■■□□□ 1.33
DDX39A-207ENST00000588542 ASB14A6NK59 587 aa23.34■■□□□ 1.33
DDX39A-207ENST00000588542 CNGA1P29973 690 aa23.34■■□□□ 1.33
DDX39A-207ENST00000588542 DNERQ8NFT8 737 aa23.34■■□□□ 1.33
DDX39A-207ENST00000588542 TAAR1Q96RJ0 339 aa23.34■■□□□ 1.33
DDX39A-207ENST00000588542 TPCN1Q9ULQ1 816 aa23.34■■□□□ 1.33
DDX39A-207ENST00000588542 TNRC18O15417 2968 aaPredicted RBP23.33■■□□□ 1.33
DDX39A-207ENST00000588542 LOC102724159A0A0B4J2E5 919 aa23.33■■□□□ 1.33
DDX39A-207ENST00000588542 SEPT4O43236 478 aa23.33■■□□□ 1.33
DDX39A-207ENST00000588542 PWP2Q15269 919 aaKnown RBP23.33■■□□□ 1.33
DDX39A-207ENST00000588542 SAMD3Q8N6K7 520 aa23.33■■□□□ 1.33
DDX39A-207ENST00000588542 GPKOWQ92917 476 aaPredicted RBP eCLIP23.33■■□□□ 1.338e-6■■□□□ 13.6
DDX39A-207ENST00000588542 ABHD16BQ9H3Z7 469 aa23.33■■□□□ 1.33
DDX39A-207ENST00000588542 MAP3K20Q9NYL2 800 aaKnown RBP23.33■■□□□ 1.33
DDX39A-207ENST00000588542 DDX20Q9UHI6 824 aaKnown RBP23.33■■□□□ 1.33
DDX39A-207ENST00000588542 CNPY2Q9Y2B0 182 aa23.33■■□□□ 1.33
DDX39A-207ENST00000588542 IFNAR1P17181 557 aa23.32■■□□□ 1.32
DDX39A-207ENST00000588542 EDNRBP24530 442 aa23.32■■□□□ 1.32
DDX39A-207ENST00000588542 HOXA13P31271 388 aaPredicted RBP23.32■■□□□ 1.32
DDX39A-207ENST00000588542 STK3Q13188 491 aa23.32■■□□□ 1.32
DDX39A-207ENST00000588542 ACVR2BQ13705 512 aa23.32■■□□□ 1.32
DDX39A-207ENST00000588542 ANKRD1Q15327 319 aa23.32■■□□□ 1.32
DDX39A-207ENST00000588542 WWC2Q6AWC2 1192 aa23.32■■□□□ 1.32
DDX39A-207ENST00000588542 PHKBQ93100 1093 aa23.32■■□□□ 1.32
DDX39A-207ENST00000588542 BACH2Q9BYV9 841 aa23.32■■□□□ 1.32
DDX39A-207ENST00000588542 OGDHLQ9ULD0 1010 aa23.32■■□□□ 1.32
DDX39A-207ENST00000588542 TFRCP02786 760 aaKnown RBP23.31■■□□□ 1.32
DDX39A-207ENST00000588542 TYW1BQ6NUM6 668 aa23.31■■□□□ 1.32
DDX39A-207ENST00000588542 HEATR3Q7Z4Q2 680 aa23.31■■□□□ 1.32
DDX39A-207ENST00000588542 GCOM1H8Y6P7 765 aaPredicted RBP23.3■■□□□ 1.32
DDX39A-207ENST00000588542 PRPF3O43395 683 aaKnown RBP23.3■■□□□ 1.32
DDX39A-207ENST00000588542 MSCO60682 206 aa23.3■■□□□ 1.32
DDX39A-207ENST00000588542 POLR2MP0CAP2 368 aa23.3■■□□□ 1.32
DDX39A-207ENST00000588542 CAPN2P17655 700 aa23.3■■□□□ 1.32
DDX39A-207ENST00000588542 SCRN1Q12765 414 aa23.3■■□□□ 1.32
DDX39A-207ENST00000588542 PKN1Q16512 942 aa23.3■■□□□ 1.32
DDX39A-207ENST00000588542 ANO1Q5XXA6 986 aa23.3■■□□□ 1.32
DDX39A-207ENST00000588542 RMDN3Q96TC7 470 aa23.3■■□□□ 1.32
DDX39A-207ENST00000588542 UPF2Q9HAU5 1272 aaKnown RBP23.3■■□□□ 1.32
DDX39A-207ENST00000588542 ZHX1Q9UKY1 873 aaPredicted RBP23.3■■□□□ 1.32
DDX39A-207ENST00000588542 STXBP3O00186 592 aa23.29■■□□□ 1.32
DDX39A-207ENST00000588542 MEIS2O14770 477 aa23.29■■□□□ 1.32
DDX39A-207ENST00000588542 PFKFB2O60825 505 aa23.29■■□□□ 1.32
DDX39A-207ENST00000588542 PPFIA3O75145 1194 aa23.29■■□□□ 1.32
DDX39A-207ENST00000588542 LARGE1O95461 756 aa23.29■■□□□ 1.32
DDX39A-207ENST00000588542 MNX1P50219 401 aaPredicted RBP23.29■■□□□ 1.32
DDX39A-207ENST00000588542 PFKFB3Q16875 520 aaPredicted RBP23.29■■□□□ 1.32
DDX39A-207ENST00000588542 TAPT1Q6NXT6 567 aa23.29■■□□□ 1.32
DDX39A-207ENST00000588542 UBE2Q1Q7Z7E8 422 aa23.29■■□□□ 1.32
DDX39A-207ENST00000588542 TBC1D32Q96NH3 1257 aa23.29■■□□□ 1.32
DDX39A-207ENST00000588542 RNF26Q9BY78 433 aaPredicted RBP23.29■■□□□ 1.32
DDX39A-207ENST00000588542 PXMP2Q9NR77 195 aa23.29■■□□□ 1.32
DDX39A-207ENST00000588542 ADCY6O43306 1168 aa23.28■■□□□ 1.32
DDX39A-207ENST00000588542 AKR1A1P14550 325 aa23.28■■□□□ 1.32
DDX39A-207ENST00000588542 ME3Q16798 604 aa23.28■■□□□ 1.32
DDX39A-207ENST00000588542 CCDC144BQ3MJ40 725 aa23.28■■□□□ 1.32
DDX39A-207ENST00000588542 USP17L6PQ6QN14 398 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms