RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 NSUN6Q8TEA1 469 aaKnown RBP12.61□□□□□ -0.39
CLIP3-203ENST00000586457 CLEC4DQ8WXI8 215 aa12.61□□□□□ -0.39
CLIP3-203ENST00000586457 PIGSQ96S52 555 aa12.61□□□□□ -0.39
CLIP3-203ENST00000586457 MYL10Q9BUA6 226 aa12.61□□□□□ -0.39
CLIP3-203ENST00000586457 LRRC2Q9BYS8 371 aa12.61□□□□□ -0.39
CLIP3-203ENST00000586457 SENP2Q9HC62 589 aa12.61□□□□□ -0.39
CLIP3-203ENST00000586457 VTA1Q9NP79 307 aa12.61□□□□□ -0.39
CLIP3-203ENST00000586457 TSGA10IPQ3SY00 556 aa12.6□□□□□ -0.39
CLIP3-203ENST00000586457 BLOC1S2Q6QNY1 142 aa12.6□□□□□ -0.39
CLIP3-203ENST00000586457 SLC30A10Q6XR72 485 aa12.6□□□□□ -0.39
CLIP3-203ENST00000586457 CCDC82Q8N4S0 544 aa12.6□□□□□ -0.39
CLIP3-203ENST00000586457 FANCBQ8NB91 859 aa12.6□□□□□ -0.39
CLIP3-203ENST00000586457 CUL5Q93034 780 aa12.6□□□□□ -0.39
CLIP3-203ENST00000586457 GLT1D1Q96MS3 346 aa12.6□□□□□ -0.39
CLIP3-203ENST00000586457 JAKMIP1Q96N16 626 aaKnown RBP12.6□□□□□ -0.39
CLIP3-203ENST00000586457 PURBQ96QR8 312 aaKnown RBP12.6□□□□□ -0.39
CLIP3-203ENST00000586457 RMDN3Q96TC7 470 aa12.6□□□□□ -0.39
CLIP3-203ENST00000586457 LBHD1Q9BQE6 289 aaPredicted RBP12.6□□□□□ -0.39
CLIP3-203ENST00000586457 TSEN34Q9BSV6 310 aaKnown RBP12.6□□□□□ -0.39
CLIP3-203ENST00000586457 RIOX1Q9H6W3 641 aa12.6□□□□□ -0.39
CLIP3-203ENST00000586457 MAP3K20Q9NYL2 800 aaKnown RBP12.6□□□□□ -0.39
CLIP3-203ENST00000586457 ATP11BQ9Y2G3 1177 aa12.6□□□□□ -0.39
CLIP3-203ENST00000586457 GCOM1H8Y6P7 765 aaPredicted RBP12.59□□□□□ -0.39
CLIP3-203ENST00000586457 DYNC1LI2O43237 492 aaPredicted RBP12.59□□□□□ -0.39
CLIP3-203ENST00000586457 ZBTB43O43298 467 aa12.59□□□□□ -0.39
CLIP3-203ENST00000586457 POLR2MP0CAP2 368 aa12.59□□□□□ -0.39
CLIP3-203ENST00000586457 COL6A1P12109 1028 aa12.59□□□□□ -0.39
CLIP3-203ENST00000586457 SMARCA1P28370 1054 aa12.59□□□□□ -0.39
CLIP3-203ENST00000586457 STXBP2Q15833 593 aa12.59□□□□□ -0.39
CLIP3-203ENST00000586457 SLC39A5Q6ZMH5 540 aa12.59□□□□□ -0.39
CLIP3-203ENST00000586457 MICU3Q86XE3 530 aa12.59□□□□□ -0.39
CLIP3-203ENST00000586457 FBXO16Q8IX29 292 aaPredicted RBP12.59□□□□□ -0.39
CLIP3-203ENST00000586457 SAMD3Q8N6K7 520 aa12.59□□□□□ -0.39
CLIP3-203ENST00000586457 IWS1Q96ST2 819 aa12.59□□□□□ -0.39
CLIP3-203ENST00000586457 WDR11Q9BZH6 1224 aa12.59□□□□□ -0.39
CLIP3-203ENST00000586457 GPHNQ9NQX3 736 aaPredicted RBP12.59□□□□□ -0.39
CLIP3-203ENST00000586457 RBM28Q9NW13 759 aaKnown RBP12.59□□□□□ -0.39
CLIP3-203ENST00000586457 CCDC196A0A1B0GTZ2 297 aa12.58□□□□□ -0.4
CLIP3-203ENST00000586457 MOXD2PA6NHM9 499 aa12.58□□□□□ -0.4
CLIP3-203ENST00000586457 EPB41L2O43491 1005 aaKnown RBP12.58□□□□□ -0.4
CLIP3-203ENST00000586457 RXRAP19793 462 aa12.58□□□□□ -0.4
CLIP3-203ENST00000586457 HSPA4P34932 840 aa12.58□□□□□ -0.4
CLIP3-203ENST00000586457 MNX1P50219 401 aaPredicted RBP12.58□□□□□ -0.4
CLIP3-203ENST00000586457 ACLYP53396 1101 aa12.58□□□□□ -0.4
CLIP3-203ENST00000586457 KCNA10Q16322 511 aa12.58□□□□□ -0.4
CLIP3-203ENST00000586457 LRRC26Q2I0M4 334 aa12.58□□□□□ -0.4
CLIP3-203ENST00000586457 RAB11FIP4Q86YS3 637 aa12.58□□□□□ -0.4
CLIP3-203ENST00000586457 RASEFQ8IZ41 740 aa12.58□□□□□ -0.4
CLIP3-203ENST00000586457 SMARCC2Q8TAQ2 1214 aa12.58□□□□□ -0.4
CLIP3-203ENST00000586457 SCFD2Q8WU76 684 aa12.58□□□□□ -0.4
CLIP3-203ENST00000586457 LENG1Q96BZ8 264 aaPredicted RBP12.58□□□□□ -0.4
CLIP3-203ENST00000586457 SPZ1Q9BXG8 430 aa12.58□□□□□ -0.4
CLIP3-203ENST00000586457 PRDM5Q9NQX1 630 aaPredicted RBP12.58□□□□□ -0.4
CLIP3-203ENST00000586457 STARD7Q9NQZ5 370 aa12.58□□□□□ -0.4
CLIP3-203ENST00000586457 SYNRGQ9UMZ2 1314 aa12.58□□□□□ -0.4
CLIP3-203ENST00000586457 PDE4DIPQ5VU43 2346 aa12.57□□□□□ -0.4
CLIP3-203ENST00000586457 KLF18A0A0U1RQI7 1052 aa12.57□□□□□ -0.4
CLIP3-203ENST00000586457 DCDC2CA8MYV0 355 aa12.57□□□□□ -0.4
CLIP3-203ENST00000586457 TXNP10599 105 aaKnown RBP12.57□□□□□ -0.4
CLIP3-203ENST00000586457 MYCLP12524 364 aaPredicted RBP12.57□□□□□ -0.4
CLIP3-203ENST00000586457 SYN1P17600 705 aa12.57□□□□□ -0.4
CLIP3-203ENST00000586457 CASTP20810 708 aaKnown RBP12.57□□□□□ -0.4
CLIP3-203ENST00000586457 GJA9P57773 515 aa12.57□□□□□ -0.4
CLIP3-203ENST00000586457 RTP1P59025 263 aa12.57□□□□□ -0.4
CLIP3-203ENST00000586457 EXOSC10Q01780 885 aaKnown RBP12.57□□□□□ -0.4
CLIP3-203ENST00000586457 TTLL4Q14679 1199 aa12.57□□□□□ -0.4
CLIP3-203ENST00000586457 PPP2R5BQ15173 497 aa12.57□□□□□ -0.4
CLIP3-203ENST00000586457 RTN1Q16799 776 aa12.57□□□□□ -0.4
CLIP3-203ENST00000586457 ADCK5Q3MIX3 580 aa12.57□□□□□ -0.4
CLIP3-203ENST00000586457 CHRDL2Q6WN34 429 aa12.57□□□□□ -0.4
CLIP3-203ENST00000586457 SEPT14Q6ZU15 432 aa12.57□□□□□ -0.4
CLIP3-203ENST00000586457 TLK2Q86UE8 772 aa12.57□□□□□ -0.4
CLIP3-203ENST00000586457 SGMS1Q86VZ5 419 aa12.57□□□□□ -0.4
CLIP3-203ENST00000586457 FCHSD1Q86WN1 690 aa12.57□□□□□ -0.4
CLIP3-203ENST00000586457 SYTL5Q8TDW5 730 aaPredicted RBP12.57□□□□□ -0.4
CLIP3-203ENST00000586457 TBC1D5Q92609 795 aa12.57□□□□□ -0.4
CLIP3-203ENST00000586457 MTMR8Q96EF0 704 aa12.57□□□□□ -0.4
CLIP3-203ENST00000586457 FGD4Q96M96 766 aa12.57□□□□□ -0.4
CLIP3-203ENST00000586457 TCEANC2Q96MN5 208 aa12.57□□□□□ -0.4
CLIP3-203ENST00000586457 TAAR1Q96RJ0 339 aa12.57□□□□□ -0.4
CLIP3-203ENST00000586457 PDGFCQ9NRA1 345 aa12.57□□□□□ -0.4
CLIP3-203ENST00000586457 ZMYND8Q9ULU4 1186 aaPredicted RBP12.57□□□□□ -0.4
CLIP3-203ENST00000586457 PHF24Q9UPV7 400 aa12.57□□□□□ -0.4
CLIP3-203ENST00000586457 Q9Y3F1 56 aa12.57□□□□□ -0.4
CLIP3-203ENST00000586457 SNX14Q9Y5W7 946 aa12.57□□□□□ -0.4
CLIP3-203ENST00000586457 CYP46A1Q9Y6A2 500 aa12.57□□□□□ -0.4
CLIP3-203ENST00000586457 A0A1W2PQ45 241 aaPredicted RBP12.56□□□□□ -0.4
CLIP3-203ENST00000586457 A0A1W2PQY0 241 aa12.56□□□□□ -0.4
CLIP3-203ENST00000586457 GOLGA8AA7E2F4 631 aa12.56□□□□□ -0.4
CLIP3-203ENST00000586457 GOLGA8BA8MQT2 603 aa12.56□□□□□ -0.4
CLIP3-203ENST00000586457 NKRFO15226 690 aaKnown RBP eCLIP12.56□□□□□ -0.4
CLIP3-203ENST00000586457 EIF3JO75822 258 aaKnown RBP12.56□□□□□ -0.4
CLIP3-203ENST00000586457 ASGR1P07306 291 aa12.56□□□□□ -0.4
CLIP3-203ENST00000586457 SMPD1P17405 629 aa12.56□□□□□ -0.4
CLIP3-203ENST00000586457 EIF2AK2P19525 551 aaKnown RBP12.56□□□□□ -0.4
CLIP3-203ENST00000586457 HOXA13P31271 388 aaPredicted RBP12.56□□□□□ -0.4
CLIP3-203ENST00000586457 CPT1AP50416 773 aa12.56□□□□□ -0.4
CLIP3-203ENST00000586457 AKAP17AQ02040 695 aaKnown RBP12.56□□□□□ -0.4
CLIP3-203ENST00000586457 FSCN1Q16658 493 aaKnown RBP12.56□□□□□ -0.4
CLIP3-203ENST00000586457 Q6ZUG5 572 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms