RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 ALDH5A1P51649 535 aaPredicted RBP13.73□□□□□ -0.21
LIG3-207ENST00000586119 SYDE2Q5VT97 1194 aa13.73□□□□□ -0.21
LIG3-207ENST00000586119 PSRC1Q6PGN9 363 aaPredicted RBP13.73□□□□□ -0.21
LIG3-207ENST00000586119 BTNL9Q6UXG8 535 aa13.73□□□□□ -0.21
LIG3-207ENST00000586119 SLC30A10Q6XR72 485 aa13.73□□□□□ -0.21
LIG3-207ENST00000586119 ZNF589Q86UQ0 364 aaPredicted RBP13.73□□□□□ -0.21
LIG3-207ENST00000586119 MORC4Q8TE76 937 aa13.73□□□□□ -0.21
LIG3-207ENST00000586119 DCAF4Q8WV16 495 aa13.73□□□□□ -0.21
LIG3-207ENST00000586119 CLEC4DQ8WXI8 215 aa13.73□□□□□ -0.21
LIG3-207ENST00000586119 COPS5Q92905 334 aa13.73□□□□□ -0.21
LIG3-207ENST00000586119 CRBNQ96SW2 442 aa13.73□□□□□ -0.21
LIG3-207ENST00000586119 CPVLQ9H3G5 476 aa13.73□□□□□ -0.21
LIG3-207ENST00000586119 TRMT13Q9NUP7 481 aaKnown RBP13.73□□□□□ -0.21
LIG3-207ENST00000586119 TTC28Q96AY4 2481 aa13.72□□□□□ -0.21
LIG3-207ENST00000586119 TET1Q8NFU7 2136 aa13.72□□□□□ -0.21
LIG3-207ENST00000586119 CABYRO75952 493 aa13.72□□□□□ -0.21
LIG3-207ENST00000586119 CALML3P27482 149 aa13.72□□□□□ -0.21
LIG3-207ENST00000586119 PDE1AP54750 535 aa13.72□□□□□ -0.21
LIG3-207ENST00000586119 ALX1Q15699 326 aa13.72□□□□□ -0.21
LIG3-207ENST00000586119 EVI5LQ96CN4 794 aa13.72□□□□□ -0.21
LIG3-207ENST00000586119 WDR11Q9BZH6 1224 aa13.72□□□□□ -0.21
LIG3-207ENST00000586119 VTA1Q9NP79 307 aa13.72□□□□□ -0.21
LIG3-207ENST00000586119 HELLSQ9NRZ9 838 aa13.72□□□□□ -0.21
LIG3-207ENST00000586119 Q9Y3F1 56 aa13.72□□□□□ -0.21
LIG3-207ENST00000586119 CHD9Q3L8U1 2897 aa13.72□□□□□ -0.21
LIG3-207ENST00000586119 PTPDC1A2A3K4 754 aa13.71□□□□□ -0.21
LIG3-207ENST00000586119 ZEB2O60315 1214 aa13.71□□□□□ -0.21
LIG3-207ENST00000586119 MYL3P08590 195 aa13.71□□□□□ -0.21
LIG3-207ENST00000586119 HSPD1P10809 573 aaKnown RBP13.71□□□□□ -0.21
LIG3-207ENST00000586119 TOP1P11387 765 aaKnown RBP13.71□□□□□ -0.21
LIG3-207ENST00000586119 IGFBP4P22692 258 aa13.71□□□□□ -0.21
LIG3-207ENST00000586119 NMIQ13287 307 aaPredicted RBP13.71□□□□□ -0.21
LIG3-207ENST00000586119 DUSP28Q4G0W2 176 aa13.71□□□□□ -0.21
LIG3-207ENST00000586119 MCMDC2Q4G0Z9 681 aa13.71□□□□□ -0.21
LIG3-207ENST00000586119 TBC1D5Q92609 795 aa13.71□□□□□ -0.21
LIG3-207ENST00000586119 GAS2L1Q99501 681 aaPredicted RBP13.71□□□□□ -0.21
LIG3-207ENST00000586119 ZKSCAN3Q9BRR0 538 aa13.71□□□□□ -0.21
LIG3-207ENST00000586119 ALDH8A1Q9H2A2 487 aaPredicted RBP13.71□□□□□ -0.21
LIG3-207ENST00000586119 MSRAQ9UJ68 235 aa13.71□□□□□ -0.21
LIG3-207ENST00000586119 RBM47A0AV96 593 aaKnown RBP13.7□□□□□ -0.22
LIG3-207ENST00000586119 RFXAPO00287 272 aa13.7□□□□□ -0.22
LIG3-207ENST00000586119 GOLGA8HP0CJ92 632 aa13.7□□□□□ -0.22
LIG3-207ENST00000586119 PDHBP11177 359 aa13.7□□□□□ -0.22
LIG3-207ENST00000586119 TTLL4Q14679 1199 aa13.7□□□□□ -0.22
LIG3-207ENST00000586119 TJAP1Q5JTD0 557 aa13.7□□□□□ -0.22
LIG3-207ENST00000586119 DEFB128Q7Z7B8 93 aa13.7□□□□□ -0.22
LIG3-207ENST00000586119 OR6J1Q8NGC5 347 aa13.7□□□□□ -0.22
LIG3-207ENST00000586119 UBA5Q9GZZ9 404 aa13.7□□□□□ -0.22
LIG3-207ENST00000586119 SCN10AQ9Y5Y9 1956 aa13.69□□□□□ -0.22
LIG3-207ENST00000586119 ZBBXA8MT70 800 aa13.69□□□□□ -0.22
LIG3-207ENST00000586119 RRP1P56182 461 aaKnown RBP13.69□□□□□ -0.22
LIG3-207ENST00000586119 RPS6P62753 249 aaKnown RBP13.69□□□□□ -0.22
LIG3-207ENST00000586119 PURAQ00577 322 aaKnown RBP13.69□□□□□ -0.22
LIG3-207ENST00000586119 NBPF20Q3BBV1 942 aa13.69□□□□□ -0.22
LIG3-207ENST00000586119 PPP4R3BQ5MIZ7 849 aa13.69□□□□□ -0.22
LIG3-207ENST00000586119 RNF207Q6ZRF8 634 aa13.69□□□□□ -0.22
LIG3-207ENST00000586119 TBC1D10CQ8IV04 446 aa13.69□□□□□ -0.22
LIG3-207ENST00000586119 TCP11L1Q9NUJ3 509 aa13.69□□□□□ -0.22
LIG3-207ENST00000586119 CHD7Q9P2D1 2997 aa13.69□□□□□ -0.22
LIG3-207ENST00000586119 TNKSO95271 1327 aa13.68□□□□□ -0.22
LIG3-207ENST00000586119 ARHGEF15O94989 841 aa13.68□□□□□ -0.22
LIG3-207ENST00000586119 ARIH2O95376 493 aa13.68□□□□□ -0.22
LIG3-207ENST00000586119 ZNF543Q08ER8 600 aa13.68□□□□□ -0.22
LIG3-207ENST00000586119 RAB30Q15771 203 aa13.68□□□□□ -0.22
LIG3-207ENST00000586119 AKNAD1Q5T1N1 836 aa13.68□□□□□ -0.22
LIG3-207ENST00000586119 SYMPKQ92797 1274 aaKnown RBP13.68□□□□□ -0.22
LIG3-207ENST00000586119 RILPL2Q969X0 211 aa13.68□□□□□ -0.22
LIG3-207ENST00000586119 LNPKQ9C0E8 428 aa13.68□□□□□ -0.22
LIG3-207ENST00000586119 CERS4Q9HA82 394 aa13.68□□□□□ -0.22
LIG3-207ENST00000586119 SLC28A3Q9HAS3 691 aa13.68□□□□□ -0.22
LIG3-207ENST00000586119 ADD3Q9UEY8 706 aaKnown RBP13.68□□□□□ -0.22
LIG3-207ENST00000586119 RAPGEFL1Q9UHV5 662 aa13.68□□□□□ -0.22
LIG3-207ENST00000586119 SLC4A7Q9Y6M7 1214 aa13.68□□□□□ -0.22
LIG3-207ENST00000586119 PRRC2BQ5JSZ5 2229 aaKnown RBP13.68□□□□□ -0.22
LIG3-207ENST00000586119 REV3LO60673 3130 aa13.67□□□□□ -0.22
LIG3-207ENST00000586119 CHMP4BP1P59074 171 aa13.67□□□□□ -0.22
LIG3-207ENST00000586119 USH1GQ495M9 461 aa13.67□□□□□ -0.22
LIG3-207ENST00000586119 FAM47CQ5HY64 1035 aa13.67□□□□□ -0.22
LIG3-207ENST00000586119 B4GALNT3Q6L9W6 998 aa13.67□□□□□ -0.22
LIG3-207ENST00000586119 RPUSD2Q8IZ73 545 aaKnown RBP13.67□□□□□ -0.22
LIG3-207ENST00000586119 MTG1Q9BT17 334 aaPredicted RBP13.67□□□□□ -0.22
LIG3-207ENST00000586119 NEDD4P46934 1319 aa13.66□□□□□ -0.22
LIG3-207ENST00000586119 MYH7BA7E2Y1 1941 aa13.66□□□□□ -0.22
LIG3-207ENST00000586119 EPOPA6NHQ4 379 aa13.66□□□□□ -0.22
LIG3-207ENST00000586119 TRIM6-TRIM34B2RNG4 842 aa13.66□□□□□ -0.22
LIG3-207ENST00000586119 SNHG28P0DPA3 235 aa13.66□□□□□ -0.22
LIG3-207ENST00000586119 TXNP10599 105 aaKnown RBP13.66□□□□□ -0.22
LIG3-207ENST00000586119 EDNRBP24530 442 aa13.66□□□□□ -0.22
LIG3-207ENST00000586119 PDE4DQ08499 809 aa13.66□□□□□ -0.22
LIG3-207ENST00000586119 KRT40Q6A162 431 aa13.66□□□□□ -0.22
LIG3-207ENST00000586119 MFSD6Q6ZSS7 791 aa13.66□□□□□ -0.22
LIG3-207ENST00000586119 SPRED2Q7Z698 418 aa13.66□□□□□ -0.22
LIG3-207ENST00000586119 MICALL1Q8N3F8 863 aa13.66□□□□□ -0.22
LIG3-207ENST00000586119 ASB2Q96Q27 587 aa13.66□□□□□ -0.22
LIG3-207ENST00000586119 TAAR1Q96RJ0 339 aa13.66□□□□□ -0.22
LIG3-207ENST00000586119 POLR3EQ9NVU0 708 aa13.66□□□□□ -0.22
LIG3-207ENST00000586119 COL20A1Q9P218 1284 aa13.66□□□□□ -0.22
LIG3-207ENST00000586119 ZBTB47Q9UFB7 747 aaPredicted RBP13.66□□□□□ -0.22
LIG3-207ENST00000586119 MYH6P13533 1939 aa13.66□□□□□ -0.22
LIG3-207ENST00000586119 PTPRSQ13332 1948 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms