RNA–Protein interactions for RNA: ENST00000585428.1

SDF2-202, Transcript of stromal cell derived factor 2, humanhuman

TSL 1 (best)

Gene SDF2, Length 924 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-202ENST00000585428 TJAP1Q5JTD0 557 aa17.09■□□□□ 0.33
SDF2-202ENST00000585428 OTOP2Q7RTS6 562 aa17.09■□□□□ 0.33
SDF2-202ENST00000585428 TICAM2Q86XR7 235 aa17.09■□□□□ 0.33
SDF2-202ENST00000585428 GAS2L1Q99501 681 aaPredicted RBP17.09■□□□□ 0.33
SDF2-202ENST00000585428 TMEM47Q9BQJ4 181 aa17.09■□□□□ 0.33
SDF2-202ENST00000585428 WNT8AQ9H1J5 351 aa17.09■□□□□ 0.33
SDF2-202ENST00000585428 TOP1P11387 765 aaKnown RBP17.08■□□□□ 0.32
SDF2-202ENST00000585428 ALDH5A1P51649 535 aaPredicted RBP17.08■□□□□ 0.32
SDF2-202ENST00000585428 ANKRD45Q5TZF3 282 aa17.08■□□□□ 0.32
SDF2-202ENST00000585428 RPUSD2Q8IZ73 545 aaKnown RBP17.08■□□□□ 0.32
SDF2-202ENST00000585428 ATXN2LQ8WWM7 1075 aaKnown RBP17.08■□□□□ 0.32
SDF2-202ENST00000585428 CLEC4DQ8WXI8 215 aa17.08■□□□□ 0.32
SDF2-202ENST00000585428 WDR11Q9BZH6 1224 aa17.08■□□□□ 0.32
SDF2-202ENST00000585428 ALDH8A1Q9H2A2 487 aaPredicted RBP17.08■□□□□ 0.32
SDF2-202ENST00000585428 ADD3Q9UEY8 706 aaKnown RBP17.08■□□□□ 0.32
SDF2-202ENST00000585428 MTMR7Q9Y216 660 aa17.08■□□□□ 0.32
SDF2-202ENST00000585428 YBX2Q9Y2T7 364 aaKnown RBP17.08■□□□□ 0.32
SDF2-202ENST00000585428 NFIBO00712 420 aa17.07■□□□□ 0.32
SDF2-202ENST00000585428 MCMDC2Q4G0Z9 681 aa17.07■□□□□ 0.32
SDF2-202ENST00000585428 SYDE2Q5VT97 1194 aa17.07■□□□□ 0.32
SDF2-202ENST00000585428 TTC14Q96N46 770 aa17.07■□□□□ 0.32
SDF2-202ENST00000585428 MTIF3Q9H2K0 278 aaKnown RBP17.07■□□□□ 0.32
SDF2-202ENST00000585428 MCM3APO60318 1980 aa17.06■□□□□ 0.32
SDF2-202ENST00000585428 SUPT20HL2P0C7V6 817 aa17.06■□□□□ 0.32
SDF2-202ENST00000585428 HSPD1P10809 573 aaKnown RBP17.06■□□□□ 0.32
SDF2-202ENST00000585428 PDE1AP54750 535 aa17.06■□□□□ 0.32
SDF2-202ENST00000585428 PURAQ00577 322 aaKnown RBP17.06■□□□□ 0.32
SDF2-202ENST00000585428 CCDC96Q2M329 555 aa17.06■□□□□ 0.32
SDF2-202ENST00000585428 PPM1EQ8WY54 764 aa17.06■□□□□ 0.32
SDF2-202ENST00000585428 FAM227BQ96M60 508 aa17.06■□□□□ 0.32
SDF2-202ENST00000585428 NKX2-4Q9H2Z4 354 aa17.06■□□□□ 0.32
SDF2-202ENST00000585428 SLC28A3Q9HAS3 691 aa17.06■□□□□ 0.32
SDF2-202ENST00000585428 GPCPD1Q9NPB8 672 aa17.06■□□□□ 0.32
SDF2-202ENST00000585428 POLR3EQ9NVU0 708 aa17.06■□□□□ 0.32
SDF2-202ENST00000585428 MUC3AQ02505 3323 aa17.05■□□□□ 0.32
SDF2-202ENST00000585428 SNHG28P0DPA3 235 aa17.05■□□□□ 0.32
SDF2-202ENST00000585428 PDHBP11177 359 aa17.05■□□□□ 0.32
SDF2-202ENST00000585428 SCLYQ96I15 445 aa17.05■□□□□ 0.32
SDF2-202ENST00000585428 ASB2Q96Q27 587 aa17.05■□□□□ 0.32
SDF2-202ENST00000585428 TRMT13Q9NUP7 481 aaKnown RBP17.05■□□□□ 0.32
SDF2-202ENST00000585428 PNMA2Q9UL42 364 aa17.05■□□□□ 0.32
SDF2-202ENST00000585428 SLC4A7Q9Y6M7 1214 aa17.05■□□□□ 0.32
SDF2-202ENST00000585428 CHD7Q9P2D1 2997 aa17.05■□□□□ 0.32
SDF2-202ENST00000585428 FRMPD2Q68DX3 1309 aaPredicted RBP17.04■□□□□ 0.32
SDF2-202ENST00000585428 A0A0D9SFI3 127 aa17.04■□□□□ 0.32
SDF2-202ENST00000585428 PTPDC1A2A3K4 754 aa17.04■□□□□ 0.32
SDF2-202ENST00000585428 TNFRSF10AO00220 468 aa17.04■□□□□ 0.32
SDF2-202ENST00000585428 CYP2C9P11712 490 aa17.04■□□□□ 0.32
SDF2-202ENST00000585428 EDNRBP24530 442 aa17.04■□□□□ 0.32
SDF2-202ENST00000585428 CPT1AP50416 773 aa17.04■□□□□ 0.32
SDF2-202ENST00000585428 RABGGTBP53611 331 aa17.04■□□□□ 0.32
SDF2-202ENST00000585428 RRP12Q5JTH9 1297 aaKnown RBP17.04■□□□□ 0.32
SDF2-202ENST00000585428 RNF207Q6ZRF8 634 aa17.04■□□□□ 0.32
SDF2-202ENST00000585428 RGS22Q8NE09 1264 aa17.04■□□□□ 0.32
SDF2-202ENST00000585428 PCDHA11Q9Y5I1 949 aa17.04■□□□□ 0.32
SDF2-202ENST00000585428 A6NJR5 290 aa17.03■□□□□ 0.32
SDF2-202ENST00000585428 MYOGP15173 224 aa17.03■□□□□ 0.32
SDF2-202ENST00000585428 RPS6P62753 249 aaKnown RBP17.03■□□□□ 0.32
SDF2-202ENST00000585428 ZNF543Q08ER8 600 aa17.03■□□□□ 0.32
SDF2-202ENST00000585428 CCDC85BQ15834 202 aaPredicted RBP17.03■□□□□ 0.32
SDF2-202ENST00000585428 NBPF20Q3BBV1 942 aa17.03■□□□□ 0.32
SDF2-202ENST00000585428 SLC30A10Q6XR72 485 aa17.03■□□□□ 0.32
SDF2-202ENST00000585428 DNERQ8NFT8 737 aa17.03■□□□□ 0.32
SDF2-202ENST00000585428 MTG1Q9BT17 334 aaPredicted RBP17.03■□□□□ 0.32
SDF2-202ENST00000585428 TOMM22Q9NS69 142 aa17.03■□□□□ 0.32
SDF2-202ENST00000585428 TNKSO95271 1327 aa17.02■□□□□ 0.32
SDF2-202ENST00000585428 ZMYM6O95789 1325 aa17.02■□□□□ 0.32
SDF2-202ENST00000585428 NKRFO15226 690 aaKnown RBP eCLIP17.02■□□□□ 0.32
SDF2-202ENST00000585428 KPNA6O60684 536 aa17.02■□□□□ 0.32
SDF2-202ENST00000585428 PFKMP08237 780 aa17.02■□□□□ 0.32
SDF2-202ENST00000585428 MYL3P08590 195 aa17.02■□□□□ 0.32
SDF2-202ENST00000585428 PCP11498 1178 aaKnown RBP17.02■□□□□ 0.32
SDF2-202ENST00000585428 IGFBP4P22692 258 aa17.02■□□□□ 0.32
SDF2-202ENST00000585428 CALML3P27482 149 aa17.02■□□□□ 0.32
SDF2-202ENST00000585428 MRPS5P82675 430 aaKnown RBP17.02■□□□□ 0.32
SDF2-202ENST00000585428 HDAC1Q13547 482 aaPredicted RBP17.02■□□□□ 0.32
SDF2-202ENST00000585428 TTLL4Q14679 1199 aa17.02■□□□□ 0.32
SDF2-202ENST00000585428 NFRKBQ6P4R8 1299 aa17.02■□□□□ 0.32
SDF2-202ENST00000585428 ZNF589Q86UQ0 364 aaPredicted RBP17.02■□□□□ 0.32
SDF2-202ENST00000585428 OR6J1Q8NGC5 347 aa17.02■□□□□ 0.32
SDF2-202ENST00000585428 RNF39Q9H2S5 420 aa17.02■□□□□ 0.32
SDF2-202ENST00000585428 GPHNQ9NQX3 736 aaPredicted RBP17.02■□□□□ 0.32
SDF2-202ENST00000585428 ZBTB47Q9UFB7 747 aaPredicted RBP17.02■□□□□ 0.32
SDF2-202ENST00000585428 WDR19Q8NEZ3 1342 aa17.01■□□□□ 0.31
SDF2-202ENST00000585428 ATP2A2P16615 1042 aaKnown RBP17.01■□□□□ 0.31
SDF2-202ENST00000585428 PDE4DQ08499 809 aa17.01■□□□□ 0.31
SDF2-202ENST00000585428 MFSD6Q6ZSS7 791 aa17.01■□□□□ 0.31
SDF2-202ENST00000585428 SCFD2Q8WU76 684 aa17.01■□□□□ 0.31
SDF2-202ENST00000585428 MAF1Q9H063 256 aa17.01■□□□□ 0.31
SDF2-202ENST00000585428 THEGQ9P2T0 379 aa17.01■□□□□ 0.31
SDF2-202ENST00000585428 IQCF3P0C7M6 154 aa17■□□□□ 0.31
SDF2-202ENST00000585428 POU3F3P20264 500 aaPredicted RBP17■□□□□ 0.31
SDF2-202ENST00000585428 HAND2P61296 217 aa17■□□□□ 0.31
SDF2-202ENST00000585428 PTPN11Q06124 597 aaPredicted RBP17■□□□□ 0.31
SDF2-202ENST00000585428 NMIQ13287 307 aaPredicted RBP17■□□□□ 0.31
SDF2-202ENST00000585428 BRDTQ58F21 947 aaPredicted RBP17■□□□□ 0.31
SDF2-202ENST00000585428 CCDC62Q6P9F0 684 aa17■□□□□ 0.31
SDF2-202ENST00000585428 DGKHQ86XP1 1220 aa17■□□□□ 0.31
SDF2-202ENST00000585428 COPS5Q92905 334 aa17■□□□□ 0.31
SDF2-202ENST00000585428 ZBBXA8MT70 800 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms