RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 NDUFA8P51970 172 aa11.83□□□□□ -0.52
LIG3-203ENST00000585370 MRPL12P52815 198 aaKnown RBP11.83□□□□□ -0.52
LIG3-203ENST00000585370 LACTBP83111 547 aaPredicted RBP11.83□□□□□ -0.52
LIG3-203ENST00000585370 ARHGEF6Q15052 776 aa11.83□□□□□ -0.52
LIG3-203ENST00000585370 CAMK4Q16566 473 aa11.83□□□□□ -0.52
LIG3-203ENST00000585370 PIK3AP1Q6ZUJ8 805 aa11.83□□□□□ -0.52
LIG3-203ENST00000585370 GPKOWQ92917 476 aaPredicted RBP eCLIP11.83□□□□□ -0.52
LIG3-203ENST00000585370 USP25Q9UHP3 1055 aa11.83□□□□□ -0.52
LIG3-203ENST00000585370 FBXO2Q9UK22 296 aaPredicted RBP11.83□□□□□ -0.52
LIG3-203ENST00000585370 PCDHA6Q9UN73 950 aa11.83□□□□□ -0.52
LIG3-203ENST00000585370 TMX2Q9Y320 296 aa11.83□□□□□ -0.52
LIG3-203ENST00000585370 PCDHA8Q9Y5H6 950 aa11.83□□□□□ -0.52
LIG3-203ENST00000585370 CEP290O15078 2479 aa11.83□□□□□ -0.52
LIG3-203ENST00000585370 FRMPD2Q68DX3 1309 aaPredicted RBP11.83□□□□□ -0.52
LIG3-203ENST00000585370 RANBP2P49792 3224 aaKnown RBP11.82□□□□□ -0.52
LIG3-203ENST00000585370 SIPA1L1O43166 1804 aa11.82□□□□□ -0.52
LIG3-203ENST00000585370 BMP3P12645 472 aa11.82□□□□□ -0.52
LIG3-203ENST00000585370 ATP2B1P20020 1258 aa11.82□□□□□ -0.52
LIG3-203ENST00000585370 CTGFP29279 349 aa11.82□□□□□ -0.52
LIG3-203ENST00000585370 ADCY7P51828 1080 aa11.82□□□□□ -0.52
LIG3-203ENST00000585370 ATP2C1P98194 919 aaPredicted RBP11.82□□□□□ -0.52
LIG3-203ENST00000585370 TYRO3Q06418 890 aa11.82□□□□□ -0.52
LIG3-203ENST00000585370 CCDC173Q0VFZ6 552 aa11.82□□□□□ -0.52
LIG3-203ENST00000585370 MOGSQ13724 837 aa11.82□□□□□ -0.52
LIG3-203ENST00000585370 NONOQ15233 471 aaKnown RBP eCLIP11.82□□□□□ -0.52
LIG3-203ENST00000585370 SLC9C1Q4G0N8 1177 aa11.82□□□□□ -0.52
LIG3-203ENST00000585370 SHC4Q6S5L8 630 aa11.82□□□□□ -0.52
LIG3-203ENST00000585370 C17orf99Q6UX52 265 aa11.82□□□□□ -0.52
LIG3-203ENST00000585370 HOMER1Q86YM7 354 aa11.82□□□□□ -0.52
LIG3-203ENST00000585370 CHURC1Q8WUH1 139 aa11.82□□□□□ -0.52
LIG3-203ENST00000585370 NAP1L4Q99733 375 aaKnown RBP11.82□□□□□ -0.52
LIG3-203ENST00000585370 RIC8AQ9NPQ8 531 aa11.82□□□□□ -0.52
LIG3-203ENST00000585370 KCNH3Q9ULD8 1083 aa11.82□□□□□ -0.52
LIG3-203ENST00000585370 ZBTB21Q9ULJ3 1066 aa11.82□□□□□ -0.52
LIG3-203ENST00000585370 KCNH4Q9UQ05 1017 aa11.82□□□□□ -0.52
LIG3-203ENST00000585370 SZT2Q5T011 3432 aa11.81□□□□□ -0.52
LIG3-203ENST00000585370 PHF20L1A8MW92 1017 aa11.81□□□□□ -0.52
LIG3-203ENST00000585370 PDHXO00330 501 aa11.81□□□□□ -0.52
LIG3-203ENST00000585370 CTNND1O60716 968 aaKnown RBP11.81□□□□□ -0.52
LIG3-203ENST00000585370 NDUFB10O96000 172 aa11.81□□□□□ -0.52
LIG3-203ENST00000585370 PRPHP41219 470 aa11.81□□□□□ -0.52
LIG3-203ENST00000585370 ZRSR1Q15695 479 aaKnown RBP11.81□□□□□ -0.52
LIG3-203ENST00000585370 ZNF174Q15697 407 aa11.81□□□□□ -0.52
LIG3-203ENST00000585370 NOL9Q5SY16 702 aaKnown RBP11.81□□□□□ -0.52
LIG3-203ENST00000585370 TYW1BQ6NUM6 668 aa11.81□□□□□ -0.52
LIG3-203ENST00000585370 ANKRD23Q86SG2 305 aa11.81□□□□□ -0.52
LIG3-203ENST00000585370 CLEC10AQ8IUN9 316 aa11.81□□□□□ -0.52
LIG3-203ENST00000585370 REXO1Q8N1G1 1221 aaKnown RBP11.81□□□□□ -0.52
LIG3-203ENST00000585370 TMEM106CQ9BVX2 250 aa11.81□□□□□ -0.52
LIG3-203ENST00000585370 ANO10Q9NW15 660 aa11.81□□□□□ -0.52
LIG3-203ENST00000585370 RBBP6Q7Z6E9 1792 aaKnown RBP11.8□□□□□ -0.52
LIG3-203ENST00000585370 ECM2O94769 699 aaPredicted RBP11.8□□□□□ -0.52
LIG3-203ENST00000585370 MYCP01106 439 aaPredicted RBP11.8□□□□□ -0.52
LIG3-203ENST00000585370 SLURP2P0DP57 97 aa11.8□□□□□ -0.52
LIG3-203ENST00000585370 LONP1P36776 959 aaKnown RBP11.8□□□□□ -0.52
LIG3-203ENST00000585370 PTGDRQ13258 359 aa11.8□□□□□ -0.52
LIG3-203ENST00000585370 RRP1BQ14684 758 aaKnown RBP11.8□□□□□ -0.52
LIG3-203ENST00000585370 KIF22Q14807 665 aa11.8□□□□□ -0.52
LIG3-203ENST00000585370 STX1AQ16623 288 aa11.8□□□□□ -0.52
LIG3-203ENST00000585370 EARS2Q5JPH6 523 aaKnown RBP11.8□□□□□ -0.52
LIG3-203ENST00000585370 SYDE2Q5VT97 1194 aa11.8□□□□□ -0.52
LIG3-203ENST00000585370 TTBK2Q6IQ55 1244 aa11.8□□□□□ -0.52
LIG3-203ENST00000585370 KCTD1Q719H9 257 aa11.8□□□□□ -0.52
LIG3-203ENST00000585370 FAM160B2Q86V87 743 aa11.8□□□□□ -0.52
LIG3-203ENST00000585370 CKAP2LQ8IYA6 745 aa11.8□□□□□ -0.52
LIG3-203ENST00000585370 FAM200AQ8TCP9 573 aa11.8□□□□□ -0.52
LIG3-203ENST00000585370 SH3TC2Q8TF17 1288 aa11.8□□□□□ -0.52
LIG3-203ENST00000585370 CUL5Q93034 780 aa11.8□□□□□ -0.52
LIG3-203ENST00000585370 AMNQ9BXJ7 453 aa11.8□□□□□ -0.52
LIG3-203ENST00000585370 NAT10Q9H0A0 1025 aaKnown RBP11.8□□□□□ -0.52
LIG3-203ENST00000585370 CPVLQ9H3G5 476 aa11.8□□□□□ -0.52
LIG3-203ENST00000585370 KIAA1468Q9P260 1216 aa11.8□□□□□ -0.52
LIG3-203ENST00000585370 PCDH10Q9P2E7 1040 aa11.8□□□□□ -0.52
LIG3-203ENST00000585370 CPA4Q9UI42 421 aa11.8□□□□□ -0.52
LIG3-203ENST00000585370 ZSWIM8A7E2V4 1837 aa11.8□□□□□ -0.52
LIG3-203ENST00000585370 ADGRA2Q96PE1 1338 aa11.8□□□□□ -0.52
LIG3-203ENST00000585370 BAZ2BQ9UIF8 2168 aaKnown RBP11.79□□□□□ -0.52
LIG3-203ENST00000585370 FAM205CA6NFA0 338 aa11.79□□□□□ -0.52
LIG3-203ENST00000585370 USP17L10C9JJH3 530 aa11.79□□□□□ -0.52
LIG3-203ENST00000585370 RAD21O60216 631 aa11.79□□□□□ -0.52
LIG3-203ENST00000585370 GNRH1P01148 92 aa11.79□□□□□ -0.52
LIG3-203ENST00000585370 GPAT2Q6NUI2 795 aa11.79□□□□□ -0.52
LIG3-203ENST00000585370 KRBA2Q6ZNG9 492 aa11.79□□□□□ -0.52
LIG3-203ENST00000585370 NEK8Q86SG6 692 aa11.79□□□□□ -0.52
LIG3-203ENST00000585370 POTEDQ86YR6 584 aa11.79□□□□□ -0.52
LIG3-203ENST00000585370 C4orf32Q8N8J7 132 aa11.79□□□□□ -0.52
LIG3-203ENST00000585370 CNNM3Q8NE01 707 aa11.79□□□□□ -0.52
LIG3-203ENST00000585370 CLIC6Q96NY7 704 aa11.79□□□□□ -0.52
LIG3-203ENST00000585370 PPP1R9BQ96SB3 815 aa11.79□□□□□ -0.52
LIG3-203ENST00000585370 VCPKMTQ9H867 229 aa11.79□□□□□ -0.52
LIG3-203ENST00000585370 PSTPIP2Q9H939 334 aa11.79□□□□□ -0.52
LIG3-203ENST00000585370 PNMA2Q9UL42 364 aa11.79□□□□□ -0.52
LIG3-203ENST00000585370 MRVI1Q9Y6F6 885 aa11.79□□□□□ -0.52
LIG3-203ENST00000585370 MYH4Q9Y623 1939 aa11.79□□□□□ -0.52
LIG3-203ENST00000585370 A0A1W2PRG0 241 aa11.78□□□□□ -0.52
LIG3-203ENST00000585370 TMEM232C9JQI7 657 aa11.78□□□□□ -0.52
LIG3-203ENST00000585370 CXCL11O14625 94 aa11.78□□□□□ -0.52
LIG3-203ENST00000585370 FOSP01100 380 aaPredicted RBP11.78□□□□□ -0.52
LIG3-203ENST00000585370 MCM7P33993 719 aa11.78□□□□□ -0.52
LIG3-203ENST00000585370 SLC16A2P36021 539 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms