RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 UBE2Q1Q7Z7E8 422 aa22.59■■□□□ 1.21
SS18-209ENST00000578595 CMTR1Q8N1G2 835 aaKnown RBP22.59■■□□□ 1.21
SS18-209ENST00000578595 CCDC82Q8N4S0 544 aa22.59■■□□□ 1.21
SS18-209ENST00000578595 MAP3K14Q99558 947 aa22.59■■□□□ 1.21
SS18-209ENST00000578595 RIOX1Q9H6W3 641 aa22.59■■□□□ 1.21
SS18-209ENST00000578595 ASTN1O14525 1302 aa22.58■■□□□ 1.21
SS18-209ENST00000578595 PNMA6FA0A0J9YX94 578 aa22.58■■□□□ 1.21
SS18-209ENST00000578595 ZBTB43O43298 467 aa22.58■■□□□ 1.21
SS18-209ENST00000578595 CYTH3O43739 400 aa22.58■■□□□ 1.21
SS18-209ENST00000578595 APOA5Q6Q788 366 aa22.58■■□□□ 1.21
SS18-209ENST00000578595 Q6ZUG5 572 aa22.58■■□□□ 1.21
SS18-209ENST00000578595 SGMS1Q86VZ5 419 aa22.58■■□□□ 1.21
SS18-209ENST00000578595 FBXO16Q8IX29 292 aaPredicted RBP22.58■■□□□ 1.21
SS18-209ENST00000578595 LZTS2Q9BRK4 669 aa22.58■■□□□ 1.21
SS18-209ENST00000578595 GOLGA8AA7E2F4 631 aa22.57■■□□□ 1.2
SS18-209ENST00000578595 GOLGA8BA8MQT2 603 aa22.57■■□□□ 1.2
SS18-209ENST00000578595 B4DLN1 442 aa22.57■■□□□ 1.2
SS18-209ENST00000578595 PPP1R11O60927 126 aaPredicted RBP22.57■■□□□ 1.2
SS18-209ENST00000578595 PGK1P00558 417 aa22.57■■□□□ 1.2
SS18-209ENST00000578595 MRPL12P52815 198 aaKnown RBP22.57■■□□□ 1.2
SS18-209ENST00000578595 PDE4DQ08499 809 aa22.57■■□□□ 1.2
SS18-209ENST00000578595 RTN1Q16799 776 aa22.57■■□□□ 1.2
SS18-209ENST00000578595 SLC35G1Q2M3R5 365 aa22.57■■□□□ 1.2
SS18-209ENST00000578595 CCDC144BQ3MJ40 725 aa22.57■■□□□ 1.2
SS18-209ENST00000578595 FANCBQ8NB91 859 aa22.57■■□□□ 1.2
SS18-209ENST00000578595 TBC1D5Q92609 795 aa22.57■■□□□ 1.2
SS18-209ENST00000578595 KCNB2Q92953 911 aa22.57■■□□□ 1.2
SS18-209ENST00000578595 MTMR8Q96EF0 704 aa22.57■■□□□ 1.2
SS18-209ENST00000578595 SPZ1Q9BXG8 430 aa22.57■■□□□ 1.2
SS18-209ENST00000578595 USP26Q9BXU7 913 aa22.57■■□□□ 1.2
SS18-209ENST00000578595 MKI67P46013 3256 aaKnown RBP22.56■■□□□ 1.2
SS18-209ENST00000578595 DNM1LO00429 736 aa22.56■■□□□ 1.2
SS18-209ENST00000578595 EPB41L2O43491 1005 aaKnown RBP22.56■■□□□ 1.2
SS18-209ENST00000578595 EVI5O60447 810 aa22.56■■□□□ 1.2
SS18-209ENST00000578595 RNF180Q86T96 592 aa22.56■■□□□ 1.2
SS18-209ENST00000578595 BRF1Q92994 677 aa22.56■■□□□ 1.2
SS18-209ENST00000578595 SENP6Q9GZR1 1112 aaPredicted RBP22.56■■□□□ 1.2
SS18-209ENST00000578595 BRPF3Q9ULD4 1205 aa22.56■■□□□ 1.2
SS18-209ENST00000578595 RPS6KB1P23443 525 aa22.55■■□□□ 1.2
SS18-209ENST00000578595 MNX1P50219 401 aaPredicted RBP22.55■■□□□ 1.2
SS18-209ENST00000578595 APOBRQ0VD83 1088 aa22.55■■□□□ 1.2
SS18-209ENST00000578595 SRBD1Q8N5C6 995 aaKnown RBP22.55■■□□□ 1.2
SS18-209ENST00000578595 SPC25Q9HBM1 224 aa22.55■■□□□ 1.2
SS18-209ENST00000578595 RBM28Q9NW13 759 aaKnown RBP22.55■■□□□ 1.2
SS18-209ENST00000578595 hCG_1642624A0A1W2PR95 340 aa22.54■■□□□ 1.2
SS18-209ENST00000578595 ADCYAP1R1P41586 468 aa22.54■■□□□ 1.2
SS18-209ENST00000578595 ATN1P54259 1190 aaPredicted RBP22.54■■□□□ 1.2
SS18-209ENST00000578595 TNFAIP2Q03169 654 aa22.54■■□□□ 1.2
SS18-209ENST00000578595 LRRC41Q15345 812 aa22.54■■□□□ 1.2
SS18-209ENST00000578595 PRPF38BQ5VTL8 546 aaKnown RBP22.54■■□□□ 1.2
SS18-209ENST00000578595 TMTC3Q6ZXV5 915 aa22.54■■□□□ 1.2
SS18-209ENST00000578595 C7orf61Q8IZ16 206 aa22.54■■□□□ 1.2
SS18-209ENST00000578595 RGS22Q8NE09 1264 aa22.54■■□□□ 1.2
SS18-209ENST00000578595 DNERQ8NFT8 737 aa22.54■■□□□ 1.2
SS18-209ENST00000578595 SYTL5Q8TDW5 730 aaPredicted RBP22.54■■□□□ 1.2
SS18-209ENST00000578595 FERMT2Q96AC1 680 aa22.54■■□□□ 1.2
SS18-209ENST00000578595 VTA1Q9NP79 307 aa22.54■■□□□ 1.2
SS18-209ENST00000578595 MYH7BA7E2Y1 1941 aa22.54■■□□□ 1.2
SS18-209ENST00000578595 SYNRGQ9UMZ2 1314 aa22.54■■□□□ 1.2
SS18-209ENST00000578595 C6orf222P0C671 652 aaPredicted RBP22.53■■□□□ 1.2
SS18-209ENST00000578595 EIF2AK2P19525 551 aaKnown RBP22.53■■□□□ 1.2
SS18-209ENST00000578595 HOXA13P31271 388 aaPredicted RBP22.53■■□□□ 1.2
SS18-209ENST00000578595 METAP2P50579 478 aaKnown RBP eCLIP22.53■■□□□ 1.2
SS18-209ENST00000578595 ARHGEF16Q5VV41 709 aa22.53■■□□□ 1.2
SS18-209ENST00000578595 TAAR1Q96RJ0 339 aa22.53■■□□□ 1.2
SS18-209ENST00000578595 RMDN3Q96TC7 470 aa22.53■■□□□ 1.2
SS18-209ENST00000578595 PDGFCQ9NRA1 345 aa22.53■■□□□ 1.2
SS18-209ENST00000578595 NR2E3Q9Y5X4 410 aa22.53■■□□□ 1.2
SS18-209ENST00000578595 CYP46A1Q9Y6A2 500 aa22.53■■□□□ 1.2
SS18-209ENST00000578595 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.52■■□□□ 1.2
SS18-209ENST00000578595 EIF5BO60841 1220 aaKnown RBP22.52■■□□□ 1.2
SS18-209ENST00000578595 DUSP11O75319 330 aaKnown RBP22.52■■□□□ 1.2
SS18-209ENST00000578595 FCHSD1Q86WN1 690 aa22.52■■□□□ 1.2
SS18-209ENST00000578595 NSUN6Q8TEA1 469 aaKnown RBP22.52■■□□□ 1.2
SS18-209ENST00000578595 UPF3BQ9BZI7 483 aaKnown RBP22.52■■□□□ 1.2
SS18-209ENST00000578595 KATNBL1Q9H079 304 aa22.52■■□□□ 1.2
SS18-209ENST00000578595 COL20A1Q9P218 1284 aa22.52■■□□□ 1.2
SS18-209ENST00000578595 LOC102724159A0A0B4J2E5 919 aa22.51■■□□□ 1.19
SS18-209ENST00000578595 GCOM1H8Y6P7 765 aaPredicted RBP22.51■■□□□ 1.19
SS18-209ENST00000578595 ADCY6O43306 1168 aa22.51■■□□□ 1.19
SS18-209ENST00000578595 POLR2MP0CAP2 368 aa22.51■■□□□ 1.19
SS18-209ENST00000578595 SMARCA1P28370 1054 aa22.51■■□□□ 1.19
SS18-209ENST00000578595 PWP2Q15269 919 aaKnown RBP22.51■■□□□ 1.19
SS18-209ENST00000578595 RUFY3Q7L099 469 aa22.51■■□□□ 1.19
SS18-209ENST00000578595 HEATR3Q7Z4Q2 680 aa22.51■■□□□ 1.19
SS18-209ENST00000578595 AP5M1Q9H0R1 490 aa22.51■■□□□ 1.19
SS18-209ENST00000578595 OPLAHO14841 1288 aa22.5■■□□□ 1.19
SS18-209ENST00000578595 COL6A1P12109 1028 aa22.5■■□□□ 1.19
SS18-209ENST00000578595 TLK2Q86UE8 772 aa22.5■■□□□ 1.19
SS18-209ENST00000578595 CUL5Q93034 780 aa22.5■■□□□ 1.19
SS18-209ENST00000578595 MAF1Q9H063 256 aa22.5■■□□□ 1.19
SS18-209ENST00000578595 CNTNAP5Q8WYK1 1306 aa22.5■■□□□ 1.19
SS18-209ENST00000578595 HSD17B4P51659 736 aa22.49■■□□□ 1.19
SS18-209ENST00000578595 PPP2R5BQ15173 497 aa22.49■■□□□ 1.19
SS18-209ENST00000578595 SMARCC2Q8TAQ2 1214 aa22.49■■□□□ 1.19
SS18-209ENST00000578595 MORC4Q8TE76 937 aa22.49■■□□□ 1.19
SS18-209ENST00000578595 MYADML2A6NDP7 307 aa22.48■■□□□ 1.19
SS18-209ENST00000578595 H0YGN5 161 aa22.48■■□□□ 1.19
SS18-209ENST00000578595 ADAMTS4O75173 837 aa22.48■■□□□ 1.19
SS18-209ENST00000578595 MYCLP12524 364 aaPredicted RBP22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms