RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 ZNF543Q08ER8 600 aa16.08■□□□□ 0.16
CCDC40-216ENST00000576241 FAAP100Q0VG06 881 aa16.08■□□□□ 0.16
CCDC40-216ENST00000576241 CCDC178Q5BJE1 867 aa16.08■□□□□ 0.16
CCDC40-216ENST00000576241 AP5M1Q9H0R1 490 aa16.08■□□□□ 0.16
CCDC40-216ENST00000576241 ADD3Q9UEY8 706 aaKnown RBP16.08■□□□□ 0.16
CCDC40-216ENST00000576241 NEDD4P46934 1319 aa16.08■□□□□ 0.16
CCDC40-216ENST00000576241 A0A0U1RQG5 324 aaPredicted RBP16.07■□□□□ 0.16
CCDC40-216ENST00000576241 IGFBP4P22692 258 aa16.07■□□□□ 0.16
CCDC40-216ENST00000576241 PBX2P40425 430 aa16.07■□□□□ 0.16
CCDC40-216ENST00000576241 IRX5P78411 483 aaPredicted RBP16.07■□□□□ 0.16
CCDC40-216ENST00000576241 FPGSQ05932 587 aa16.07■□□□□ 0.16
CCDC40-216ENST00000576241 GPATCH4Q5T3I0 446 aaKnown RBP16.07■□□□□ 0.16
CCDC40-216ENST00000576241 TLK2Q86UE8 772 aa16.07■□□□□ 0.16
CCDC40-216ENST00000576241 IQCA1Q86XH1 822 aa16.07■□□□□ 0.16
CCDC40-216ENST00000576241 ASTN1O14525 1302 aa16.07■□□□□ 0.16
CCDC40-216ENST00000576241 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.06■□□□□ 0.16
CCDC40-216ENST00000576241 PTPDC1A2A3K4 754 aa16.06■□□□□ 0.16
CCDC40-216ENST00000576241 ZEB2O60315 1214 aa16.06■□□□□ 0.16
CCDC40-216ENST00000576241 SNHG28P0DPA3 235 aa16.06■□□□□ 0.16
CCDC40-216ENST00000576241 NKX3-2P78367 333 aa16.06■□□□□ 0.16
CCDC40-216ENST00000576241 BAATQ14032 418 aaPredicted RBP16.06■□□□□ 0.16
CCDC40-216ENST00000576241 IMMTQ16891 758 aaKnown RBP16.06■□□□□ 0.16
CCDC40-216ENST00000576241 TMEM31Q5JXX7 168 aa16.06■□□□□ 0.16
CCDC40-216ENST00000576241 IQSEC1Q6DN90 963 aa16.06■□□□□ 0.16
CCDC40-216ENST00000576241 EEPD1Q7L9B9 569 aa16.06■□□□□ 0.16
CCDC40-216ENST00000576241 DGKHQ86XP1 1220 aa16.06■□□□□ 0.16
CCDC40-216ENST00000576241 FBXO16Q8IX29 292 aaPredicted RBP16.06■□□□□ 0.16
CCDC40-216ENST00000576241 ZKSCAN3Q9BRR0 538 aa16.06■□□□□ 0.16
CCDC40-216ENST00000576241 DSCC1Q9BVC3 393 aa16.06■□□□□ 0.16
CCDC40-216ENST00000576241 VTA1Q9NP79 307 aa16.06■□□□□ 0.16
CCDC40-216ENST00000576241 CTNNA3Q9UI47 895 aa16.06■□□□□ 0.16
CCDC40-216ENST00000576241 CHD9Q3L8U1 2897 aa16.06■□□□□ 0.16
CCDC40-216ENST00000576241 WDR19Q8NEZ3 1342 aa16.05■□□□□ 0.16
CCDC40-216ENST00000576241 ARVCFO00192 962 aa16.05■□□□□ 0.16
CCDC40-216ENST00000576241 NFIBO00712 420 aa16.05■□□□□ 0.16
CCDC40-216ENST00000576241 TLR3O15455 904 aaKnown RBP16.05■□□□□ 0.16
CCDC40-216ENST00000576241 KDM4AO75164 1064 aa16.05■□□□□ 0.16
CCDC40-216ENST00000576241 CABYRO75952 493 aa16.05■□□□□ 0.16
CCDC40-216ENST00000576241 CDK7P50613 346 aa16.05■□□□□ 0.16
CCDC40-216ENST00000576241 BEX3Q00994 111 aa16.05■□□□□ 0.16
CCDC40-216ENST00000576241 TFF2Q03403 129 aa16.05■□□□□ 0.16
CCDC40-216ENST00000576241 FSCN1Q16658 493 aaKnown RBP16.05■□□□□ 0.16
CCDC40-216ENST00000576241 PURBQ96QR8 312 aaKnown RBP16.05■□□□□ 0.16
CCDC40-216ENST00000576241 MPHOSPH6Q99547 160 aaKnown RBP16.05■□□□□ 0.16
CCDC40-216ENST00000576241 PBX4Q9BYU1 374 aa16.05■□□□□ 0.16
CCDC40-216ENST00000576241 KAT14Q9H8E8 782 aa16.05■□□□□ 0.16
CCDC40-216ENST00000576241 CXXC1Q9P0U4 656 aaPredicted RBP16.05■□□□□ 0.16
CCDC40-216ENST00000576241 GNEQ9Y223 722 aaKnown RBP16.05■□□□□ 0.16
CCDC40-216ENST00000576241 DDX49Q9Y6V7 483 aaKnown RBP16.05■□□□□ 0.16
CCDC40-216ENST00000576241 XIRP2A4UGR9 3374 aa16.05■□□□□ 0.16
CCDC40-216ENST00000576241 LOC102724159A0A0B4J2E5 919 aa16.04■□□□□ 0.16
CCDC40-216ENST00000576241 GRXCR1A8MXD5 290 aa16.04■□□□□ 0.16
CCDC40-216ENST00000576241 CTAGE5O15320 804 aa16.04■□□□□ 0.16
CCDC40-216ENST00000576241 DYNC1LI2O43237 492 aaPredicted RBP16.04■□□□□ 0.16
CCDC40-216ENST00000576241 TIMP1P01033 207 aa16.04■□□□□ 0.16
CCDC40-216ENST00000576241 SMPD1P17405 629 aa16.04■□□□□ 0.16
CCDC40-216ENST00000576241 CALML3P27482 149 aa16.04■□□□□ 0.16
CCDC40-216ENST00000576241 ALDH5A1P51649 535 aaPredicted RBP16.04■□□□□ 0.16
CCDC40-216ENST00000576241 PWP2Q15269 919 aaKnown RBP16.04■□□□□ 0.16
CCDC40-216ENST00000576241 TAPT1Q6NXT6 567 aa16.04■□□□□ 0.16
CCDC40-216ENST00000576241 CXCL17Q6UXB2 119 aa16.04■□□□□ 0.16
CCDC40-216ENST00000576241 RNF207Q6ZRF8 634 aa16.04■□□□□ 0.16
CCDC40-216ENST00000576241 KIAA1211Q6ZU35 1233 aa16.04■□□□□ 0.16
CCDC40-216ENST00000576241 PNMA1Q8ND90 353 aa16.04■□□□□ 0.16
CCDC40-216ENST00000576241 MORC4Q8TE76 937 aa16.04■□□□□ 0.16
CCDC40-216ENST00000576241 PDGFCQ9NRA1 345 aa16.04■□□□□ 0.16
CCDC40-216ENST00000576241 TBX21Q9UL17 535 aa16.04■□□□□ 0.16
CCDC40-216ENST00000576241 Q9Y3F1 56 aa16.04■□□□□ 0.16
CCDC40-216ENST00000576241 SUPT16HQ9Y5B9 1047 aaKnown RBP16.04■□□□□ 0.16
CCDC40-216ENST00000576241 REV3LO60673 3130 aa16.03■□□□□ 0.16
CCDC40-216ENST00000576241 B4E1Z4 1266 aa16.03■□□□□ 0.16
CCDC40-216ENST00000576241 GOLGA8HP0CJ92 632 aa16.03■□□□□ 0.16
CCDC40-216ENST00000576241 KCNQ1P51787 676 aa16.03■□□□□ 0.16
CCDC40-216ENST00000576241 SLC30A10Q6XR72 485 aa16.03■□□□□ 0.16
CCDC40-216ENST00000576241 CLEC4DQ8WXI8 215 aa16.03■□□□□ 0.16
CCDC40-216ENST00000576241 ZSCAN10Q96SZ4 725 aaPredicted RBP16.03■□□□□ 0.16
CCDC40-216ENST00000576241 UBAC1Q9BSL1 405 aa16.03■□□□□ 0.16
CCDC40-216ENST00000576241 KRT23Q9C075 422 aa16.03■□□□□ 0.16
CCDC40-216ENST00000576241 TSPYL2Q9H2G4 693 aaPredicted RBP16.03■□□□□ 0.16
CCDC40-216ENST00000576241 CNNM2Q9H8M5 875 aa16.03■□□□□ 0.16
CCDC40-216ENST00000576241 MCM3APO60318 1980 aa16.03■□□□□ 0.16
CCDC40-216ENST00000576241 PDE4DQ08499 809 aa16.02■□□□□ 0.16
CCDC40-216ENST00000576241 USH1GQ495M9 461 aa16.02■□□□□ 0.16
CCDC40-216ENST00000576241 FAM126BQ8IXS8 530 aa16.02■□□□□ 0.16
CCDC40-216ENST00000576241 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.02■□□□□ 0.16
CCDC40-216ENST00000576241 UBA5Q9GZZ9 404 aa16.02■□□□□ 0.16
CCDC40-216ENST00000576241 C11orf16Q9NQ32 467 aa16.02■□□□□ 0.16
CCDC40-216ENST00000576241 ZSWIM5Q9P217 1185 aa16.02■□□□□ 0.16
CCDC40-216ENST00000576241 TNKSO95271 1327 aa16.01■□□□□ 0.15
CCDC40-216ENST00000576241 B4DLN1 442 aa16.01■□□□□ 0.15
CCDC40-216ENST00000576241 DHX16O60231 1041 aaKnown RBP16.01■□□□□ 0.15
CCDC40-216ENST00000576241 MRPL12P52815 198 aaKnown RBP16.01■□□□□ 0.15
CCDC40-216ENST00000576241 RPS6P62753 249 aaKnown RBP16.01■□□□□ 0.15
CCDC40-216ENST00000576241 PPIGQ13427 754 aaKnown RBP eCLIP16.01■□□□□ 0.15
CCDC40-216ENST00000576241 ITGA7Q13683 1181 aa16.01■□□□□ 0.15
CCDC40-216ENST00000576241 DUSP28Q4G0W2 176 aa16.01■□□□□ 0.15
CCDC40-216ENST00000576241 ASPRV1Q53RT3 343 aa16.01■□□□□ 0.15
CCDC40-216ENST00000576241 MFSD5Q6N075 450 aa16.01■□□□□ 0.15
CCDC40-216ENST00000576241 TMEM199Q8N511 208 aa16.01■□□□□ 0.15
CCDC40-216ENST00000576241 ENAHQ8N8S7 591 aaPredicted RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms