RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 KIF2CQ99661 725 aa11.04□□□□□ -0.64
CCDC40-214ENST00000575431 GLT8D2Q9H1C3 349 aa11.04□□□□□ -0.64
CCDC40-214ENST00000575431 LIMCH1Q9UPQ0 1083 aa11.04□□□□□ -0.64
CCDC40-214ENST00000575431 V9GY48 417 aaPredicted RBP11.04□□□□□ -0.64
CCDC40-214ENST00000575431 CNTNAP5Q8WYK1 1306 aa11.04□□□□□ -0.64
CCDC40-214ENST00000575431 RBBP6Q7Z6E9 1792 aaKnown RBP11.03□□□□□ -0.64
CCDC40-214ENST00000575431 GCOM1H8Y6P7 765 aaPredicted RBP11.03□□□□□ -0.64
CCDC40-214ENST00000575431 PFKFB2O60825 505 aa11.03□□□□□ -0.64
CCDC40-214ENST00000575431 POLR2MP0CAP2 368 aa11.03□□□□□ -0.64
CCDC40-214ENST00000575431 CALML3P27482 149 aa11.03□□□□□ -0.64
CCDC40-214ENST00000575431 MCM2P49736 904 aa11.03□□□□□ -0.64
CCDC40-214ENST00000575431 NTRK3Q16288 839 aa11.03□□□□□ -0.64
CCDC40-214ENST00000575431 CCL14Q16627 93 aa11.03□□□□□ -0.64
CCDC40-214ENST00000575431 PPP1R18Q6NYC8 613 aa11.03□□□□□ -0.64
CCDC40-214ENST00000575431 CCDC12Q8WUD4 166 aaPredicted RBP11.03□□□□□ -0.64
CCDC40-214ENST00000575431 CUL5Q93034 780 aa11.03□□□□□ -0.64
CCDC40-214ENST00000575431 TPCN1Q9ULQ1 816 aa11.03□□□□□ -0.64
CCDC40-214ENST00000575431 CNPY2Q9Y2B0 182 aa11.03□□□□□ -0.64
CCDC40-214ENST00000575431 CCDC85CA6NKD9 419 aa11.02□□□□□ -0.65
CCDC40-214ENST00000575431 PIK3CDO00329 1044 aa11.02□□□□□ -0.65
CCDC40-214ENST00000575431 DEXIO95424 95 aa11.02□□□□□ -0.65
CCDC40-214ENST00000575431 CFBP00751 764 aa11.02□□□□□ -0.65
CCDC40-214ENST00000575431 GJB1P08034 283 aa11.02□□□□□ -0.65
CCDC40-214ENST00000575431 CCL5P13501 91 aa11.02□□□□□ -0.65
CCDC40-214ENST00000575431 SCG2P13521 617 aa11.02□□□□□ -0.65
CCDC40-214ENST00000575431 PRKAR2AP13861 404 aaKnown RBP11.02□□□□□ -0.65
CCDC40-214ENST00000575431 HSD17B4P51659 736 aa11.02□□□□□ -0.65
CCDC40-214ENST00000575431 CCT2P78371 535 aaKnown RBP11.02□□□□□ -0.65
CCDC40-214ENST00000575431 CACNB2Q08289 660 aaPredicted RBP11.02□□□□□ -0.65
CCDC40-214ENST00000575431 SSRP1Q08945 709 aaKnown RBP11.02□□□□□ -0.65
CCDC40-214ENST00000575431 PFKFB3Q16875 520 aaPredicted RBP11.02□□□□□ -0.65
CCDC40-214ENST00000575431 MCTP2Q6DN12 878 aa11.02□□□□□ -0.65
CCDC40-214ENST00000575431 SYTL5Q8TDW5 730 aaPredicted RBP11.02□□□□□ -0.65
CCDC40-214ENST00000575431 MORC4Q8TE76 937 aa11.02□□□□□ -0.65
CCDC40-214ENST00000575431 NSUN6Q8TEA1 469 aaKnown RBP11.02□□□□□ -0.65
CCDC40-214ENST00000575431 PIBF1Q8WXW3 757 aa11.02□□□□□ -0.65
CCDC40-214ENST00000575431 IWS1Q96ST2 819 aa11.02□□□□□ -0.65
CCDC40-214ENST00000575431 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.02□□□□□ -0.65
CCDC40-214ENST00000575431 RNF208Q9H0X6 261 aa11.02□□□□□ -0.65
CCDC40-214ENST00000575431 ABHD16BQ9H3Z7 469 aa11.02□□□□□ -0.65
CCDC40-214ENST00000575431 FLRT1Q9NZU1 646 aa11.02□□□□□ -0.65
CCDC40-214ENST00000575431 PCNTO95613 3336 aa11.01□□□□□ -0.65
CCDC40-214ENST00000575431 SMCHD1A6NHR9 2005 aa11.01□□□□□ -0.65
CCDC40-214ENST00000575431 SOWAHBA6NEL2 793 aa11.01□□□□□ -0.65
CCDC40-214ENST00000575431 OPLAHO14841 1288 aa11.01□□□□□ -0.65
CCDC40-214ENST00000575431 CYP2C19P33261 490 aa11.01□□□□□ -0.65
CCDC40-214ENST00000575431 ALDH5A1P51649 535 aaPredicted RBP11.01□□□□□ -0.65
CCDC40-214ENST00000575431 CNTN2Q02246 1040 aa11.01□□□□□ -0.65
CCDC40-214ENST00000575431 SCRN1Q12765 414 aa11.01□□□□□ -0.65
CCDC40-214ENST00000575431 STK3Q13188 491 aa11.01□□□□□ -0.65
CCDC40-214ENST00000575431 SLC30A10Q6XR72 485 aa11.01□□□□□ -0.65
CCDC40-214ENST00000575431 ARMCX2Q7L311 632 aa11.01□□□□□ -0.65
CCDC40-214ENST00000575431 HEATR3Q7Z4Q2 680 aa11.01□□□□□ -0.65
CCDC40-214ENST00000575431 CCDC148Q8NFR7 591 aa11.01□□□□□ -0.65
CCDC40-214ENST00000575431 SMARCC2Q8TAQ2 1214 aa11.01□□□□□ -0.65
CCDC40-214ENST00000575431 WASF1Q92558 559 aa11.01□□□□□ -0.65
CCDC40-214ENST00000575431 RMDN3Q96TC7 470 aa11.01□□□□□ -0.65
CCDC40-214ENST00000575431 LARP6Q9BRS8 491 aaKnown RBP11.01□□□□□ -0.65
CCDC40-214ENST00000575431 SLC26A6Q9BXS9 759 aa11.01□□□□□ -0.65
CCDC40-214ENST00000575431 PSTPIP2Q9H939 334 aa11.01□□□□□ -0.65
CCDC40-214ENST00000575431 NCOA5Q9HCD5 579 aaKnown RBP11.01□□□□□ -0.65
CCDC40-214ENST00000575431 PAK6Q9NQU5 681 aaPredicted RBP11.01□□□□□ -0.65
CCDC40-214ENST00000575431 SH3GLB2Q9NR46 395 aa11.01□□□□□ -0.65
CCDC40-214ENST00000575431 SH2B1Q9NRF2 756 aaPredicted RBP11.01□□□□□ -0.65
CCDC40-214ENST00000575431 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.01□□□□□ -0.65
CCDC40-214ENST00000575431 BARHL2Q9NY43 387 aa11.01□□□□□ -0.65
CCDC40-214ENST00000575431 BAZ2BQ9UIF8 2168 aaKnown RBP11□□□□□ -0.65
CCDC40-214ENST00000575431 ESYT2A0FGR8 921 aa11□□□□□ -0.65
CCDC40-214ENST00000575431 SEPT4O43236 478 aa11□□□□□ -0.65
CCDC40-214ENST00000575431 SGPL1O95470 568 aa11□□□□□ -0.65
CCDC40-214ENST00000575431 SNAI1O95863 264 aaPredicted RBP11□□□□□ -0.65
CCDC40-214ENST00000575431 CYBAP13498 195 aa11□□□□□ -0.65
CCDC40-214ENST00000575431 AKR1A1P14550 325 aa11□□□□□ -0.65
CCDC40-214ENST00000575431 TAL1P17542 331 aaPredicted RBP11□□□□□ -0.65
CCDC40-214ENST00000575431 XBP1P17861 261 aa11□□□□□ -0.65
CCDC40-214ENST00000575431 GNA11P29992 359 aa11□□□□□ -0.65
CCDC40-214ENST00000575431 GJA8P48165 433 aa11□□□□□ -0.65
CCDC40-214ENST00000575431 NAPAP54920 295 aa11□□□□□ -0.65
CCDC40-214ENST00000575431 MTFR1Q15390 333 aa11□□□□□ -0.65
CCDC40-214ENST00000575431 ME3Q16798 604 aa11□□□□□ -0.65
CCDC40-214ENST00000575431 WWC2Q6AWC2 1192 aa11□□□□□ -0.65
CCDC40-214ENST00000575431 TBC1D5Q92609 795 aa11□□□□□ -0.65
CCDC40-214ENST00000575431 GTF3C6Q969F1 213 aa11□□□□□ -0.65
CCDC40-214ENST00000575431 FGD4Q96M96 766 aa11□□□□□ -0.65
CCDC40-214ENST00000575431 UNC93B1Q9H1C4 597 aa11□□□□□ -0.65
CCDC40-214ENST00000575431 VTA1Q9NP79 307 aa11□□□□□ -0.65
CCDC40-214ENST00000575431 STK36Q9NRP7 1315 aa11□□□□□ -0.65
CCDC40-214ENST00000575431 hCG_1642624A0A1W2PR95 340 aa10.99□□□□□ -0.65
CCDC40-214ENST00000575431 SMCO2A6NFE2 343 aa10.99□□□□□ -0.65
CCDC40-214ENST00000575431 SPDYE3A6NKU9 549 aa10.99□□□□□ -0.65
CCDC40-214ENST00000575431 FOSP01100 380 aaPredicted RBP10.99□□□□□ -0.65
CCDC40-214ENST00000575431 EDNRBP24530 442 aa10.99□□□□□ -0.65
CCDC40-214ENST00000575431 CNGA1P29973 690 aa10.99□□□□□ -0.65
CCDC40-214ENST00000575431 ADCY7P51828 1080 aa10.99□□□□□ -0.65
CCDC40-214ENST00000575431 PDE4DQ08499 809 aa10.99□□□□□ -0.65
CCDC40-214ENST00000575431 TRIM32Q13049 653 aa10.99□□□□□ -0.65
CCDC40-214ENST00000575431 ACVR2BQ13705 512 aa10.99□□□□□ -0.65
CCDC40-214ENST00000575431 PKN1Q16512 942 aa10.99□□□□□ -0.65
CCDC40-214ENST00000575431 ARHGEF16Q5VV41 709 aa10.99□□□□□ -0.65
CCDC40-214ENST00000575431 XRRA1Q6P2D8 792 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms