RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 KCNJ12Q14500 433 aa10.63□□□□□ -0.71
CCDC40-212ENST00000574799 RILPL1Q5EBL4 403 aa10.63□□□□□ -0.71
CCDC40-212ENST00000574799 TCP11Q8WWU5 503 aa10.63□□□□□ -0.71
CCDC40-212ENST00000574799 FAM84BQ96KN1 310 aaPredicted RBP10.63□□□□□ -0.71
CCDC40-212ENST00000574799 CCT8L2Q96SF2 557 aa10.63□□□□□ -0.71
CCDC40-212ENST00000574799 LRRC1Q9BTT6 524 aa10.63□□□□□ -0.71
CCDC40-212ENST00000574799 HAUS2Q9NVX0 235 aa10.63□□□□□ -0.71
CCDC40-212ENST00000574799 BSDC1Q9NW68 430 aaPredicted RBP10.63□□□□□ -0.71
CCDC40-212ENST00000574799 MPHOSPH10O00566 681 aaKnown RBP10.63□□□□□ -0.71
CCDC40-212ENST00000574799 SSR1P43307 286 aaKnown RBP10.63□□□□□ -0.71
CCDC40-212ENST00000574799 APBA1Q02410 837 aa10.63□□□□□ -0.71
CCDC40-212ENST00000574799 HIBCHQ6NVY1 386 aaPredicted RBP10.63□□□□□ -0.71
CCDC40-212ENST00000574799 NLRP14Q86W24 1093 aa10.63□□□□□ -0.71
CCDC40-212ENST00000574799 IFT20Q8IY31 132 aa10.63□□□□□ -0.71
CCDC40-212ENST00000574799 CACNA2D3Q8IZS8 1091 aa10.63□□□□□ -0.71
CCDC40-212ENST00000574799 GJD4Q96KN9 370 aaPredicted RBP10.63□□□□□ -0.71
CCDC40-212ENST00000574799 WDR19Q8NEZ3 1342 aa10.63□□□□□ -0.71
CCDC40-212ENST00000574799 TRIM75PA6NK02 468 aa10.63□□□□□ -0.71
CCDC40-212ENST00000574799 RANBP6O60518 1105 aaKnown RBP10.63□□□□□ -0.71
CCDC40-212ENST00000574799 MTIF2P46199 727 aaKnown RBP10.63□□□□□ -0.71
CCDC40-212ENST00000574799 HDLBPQ00341 1268 aaKnown RBP10.63□□□□□ -0.71
CCDC40-212ENST00000574799 GRIN1Q05586 938 aa10.63□□□□□ -0.71
CCDC40-212ENST00000574799 IFFO1Q0D2I5 559 aa10.63□□□□□ -0.71
CCDC40-212ENST00000574799 PAK1Q13153 545 aa10.63□□□□□ -0.71
CCDC40-212ENST00000574799 MORC3Q14149 939 aa10.63□□□□□ -0.71
CCDC40-212ENST00000574799 ALX1Q15699 326 aa10.63□□□□□ -0.71
CCDC40-212ENST00000574799 EZH2Q15910 746 aaKnown RBP10.63□□□□□ -0.71
CCDC40-212ENST00000574799 ENOX2Q16206 610 aaKnown RBP10.63□□□□□ -0.71
CCDC40-212ENST00000574799 CCDC152Q4G0S7 254 aa10.63□□□□□ -0.71
CCDC40-212ENST00000574799 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.63□□□□□ -0.71
CCDC40-212ENST00000574799 TRAPPC11Q7Z392 1133 aa10.63□□□□□ -0.71
CCDC40-212ENST00000574799 MAGEB6Q8N7X4 407 aa10.63□□□□□ -0.71
CCDC40-212ENST00000574799 ARMC2Q8NEN0 867 aa10.63□□□□□ -0.71
CCDC40-212ENST00000574799 THOC1Q96FV9 657 aaKnown RBP10.63□□□□□ -0.71
CCDC40-212ENST00000574799 RNPC3Q96LT9 517 aaKnown RBP10.63□□□□□ -0.71
CCDC40-212ENST00000574799 CSRNP2Q9H175 543 aa10.63□□□□□ -0.71
CCDC40-212ENST00000574799 LY9Q9HBG7 655 aa10.63□□□□□ -0.71
CCDC40-212ENST00000574799 SH2B2O14492 632 aaPredicted RBP10.62□□□□□ -0.71
CCDC40-212ENST00000574799 PPP1R37O75864 691 aa10.62□□□□□ -0.71
CCDC40-212ENST00000574799 HSPA1LP34931 641 aa10.62□□□□□ -0.71
CCDC40-212ENST00000574799 GUCY2DQ02846 1103 aa10.62□□□□□ -0.71
CCDC40-212ENST00000574799 MYO1EQ12965 1108 aa10.62□□□□□ -0.71
CCDC40-212ENST00000574799 ALS2CLQ60I27 953 aa10.62□□□□□ -0.71
CCDC40-212ENST00000574799 TAX1BP1Q86VP1 789 aa10.62□□□□□ -0.71
CCDC40-212ENST00000574799 ANKRD13CQ8N6S4 541 aa10.62□□□□□ -0.71
CCDC40-212ENST00000574799 ARMT1Q9H993 441 aa10.62□□□□□ -0.71
CCDC40-212ENST00000574799 DMGDHQ9UI17 866 aaKnown RBP10.62□□□□□ -0.71
CCDC40-212ENST00000574799 ESYT3A0FGR9 886 aa10.62□□□□□ -0.71
CCDC40-212ENST00000574799 ENO4A6NNW6 628 aa10.62□□□□□ -0.71
CCDC40-212ENST00000574799 TMCO5BA8MYB1 307 aa10.62□□□□□ -0.71
CCDC40-212ENST00000574799 SMTNP53814 917 aa10.62□□□□□ -0.71
CCDC40-212ENST00000574799 IRX1P78414 480 aaPredicted RBP10.62□□□□□ -0.71
CCDC40-212ENST00000574799 PAK2Q13177 524 aa10.62□□□□□ -0.71
CCDC40-212ENST00000574799 TDRD12Q587J7 1177 aaKnown RBP10.62□□□□□ -0.71
CCDC40-212ENST00000574799 USP49Q70CQ1 688 aa10.62□□□□□ -0.71
CCDC40-212ENST00000574799 PROM2Q8N271 834 aa10.62□□□□□ -0.71
CCDC40-212ENST00000574799 NELFBQ8WX92 580 aa10.62□□□□□ -0.71
CCDC40-212ENST00000574799 EPN3Q9H201 632 aa10.62□□□□□ -0.71
CCDC40-212ENST00000574799 NFU1Q9UMS0 254 aa10.62□□□□□ -0.71
CCDC40-212ENST00000574799 PNPLA7Q6ZV29 1317 aa10.62□□□□□ -0.71
CCDC40-212ENST00000574799 MAP2K1Q02750 393 aaPredicted RBP10.62□□□□□ -0.71
CCDC40-212ENST00000574799 CRYMQ14894 314 aa10.62□□□□□ -0.71
CCDC40-212ENST00000574799 PREPLQ4J6C6 727 aaPredicted RBP10.62□□□□□ -0.71
CCDC40-212ENST00000574799 IFNL3Q8IZI9 196 aa10.62□□□□□ -0.71
CCDC40-212ENST00000574799 CMTR1Q8N1G2 835 aaKnown RBP10.62□□□□□ -0.71
CCDC40-212ENST00000574799 SRCAPQ6ZRS2 3230 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 FSBPO95073 299 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 CTDSPL2Q05D32 466 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 EMBQ6PCB8 327 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 ACTR5Q9H9F9 607 aaPredicted RBP10.61□□□□□ -0.71
CCDC40-212ENST00000574799 EPB41L5Q9HCM4 733 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 SMARCAL1Q9NZC9 954 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 IQSEC3Q9UPP2 1182 aaPredicted RBP10.61□□□□□ -0.71
CCDC40-212ENST00000574799 GCOM1H8Y6P7 765 aaPredicted RBP10.61□□□□□ -0.71
CCDC40-212ENST00000574799 MYZAPP0CAP1 466 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 TBC1D8BQ0IIM8 1120 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 NR5A1Q13285 461 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 CCDC178Q5BJE1 867 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 CYB5D1Q6P9G0 228 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 FBXO33Q7Z6M2 555 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 RNF217Q8TC41 542 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 HDAC7Q8WUI4 952 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 CCDC47Q96A33 483 aaKnown RBP10.61□□□□□ -0.71
CCDC40-212ENST00000574799 EPSTI1Q96J88 318 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 CALR3Q96L12 384 aaKnown RBP10.61□□□□□ -0.71
CCDC40-212ENST00000574799 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.61□□□□□ -0.71
CCDC40-212ENST00000574799 VCPKMTQ9H867 229 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 PCDHB6Q9Y5E3 794 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 TTC26A0AVF1 554 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 AGPSO00116 658 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 SHOX2O60902 331 aaPredicted RBP10.61□□□□□ -0.71
CCDC40-212ENST00000574799 MBD4O95243 580 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 PTPAQ15257 358 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 RBBP5Q15291 538 aaKnown RBP10.61□□□□□ -0.71
CCDC40-212ENST00000574799 ZIM3Q96PE6 472 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 CCDC113Q9H0I3 377 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 ZSWIM5Q9P217 1185 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 STIM2Q9P246 746 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 MCM8Q9UJA3 840 aa10.61□□□□□ -0.71
CCDC40-212ENST00000574799 UQCRFS1P1P0C7P4 283 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms