RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 B4GALT4O60513 344 aa24.81■■□□□ 1.56
VPS53-216ENST00000574029 PSMC6P62333 389 aa24.81■■□□□ 1.56
VPS53-216ENST00000574029 CLEC4DQ8WXI8 215 aa24.81■■□□□ 1.56
VPS53-216ENST00000574029 NOC4LQ9BVI4 516 aaKnown RBP24.81■■□□□ 1.56
VPS53-216ENST00000574029 TRPV6Q9H1D0 765 aa24.81■■□□□ 1.56
VPS53-216ENST00000574029 PNMA2Q9UL42 364 aa24.81■■□□□ 1.56
VPS53-216ENST00000574029 RBM47A0AV96 593 aaKnown RBP24.8■■□□□ 1.56
VPS53-216ENST00000574029 PTPDC1A2A3K4 754 aa24.8■■□□□ 1.56
VPS53-216ENST00000574029 FGBP02675 491 aa24.8■■□□□ 1.56
VPS53-216ENST00000574029 SNHG28P0DPA3 235 aa24.8■■□□□ 1.56
VPS53-216ENST00000574029 PCP11498 1178 aaKnown RBP24.8■■□□□ 1.56
VPS53-216ENST00000574029 HAND2P61296 217 aa24.8■■□□□ 1.56
VPS53-216ENST00000574029 WDR11Q9BZH6 1224 aa24.8■■□□□ 1.56
VPS53-216ENST00000574029 CXXC1Q9P0U4 656 aaPredicted RBP24.8■■□□□ 1.56
VPS53-216ENST00000574029 CCDC171Q6TFL3 1326 aa24.8■■□□□ 1.56
VPS53-216ENST00000574029 GBF1Q92538 1859 aa24.79■■□□□ 1.56
VPS53-216ENST00000574029 ZNF543Q08ER8 600 aa24.79■■□□□ 1.56
VPS53-216ENST00000574029 AKNAD1Q5T1N1 836 aa24.79■■□□□ 1.56
VPS53-216ENST00000574029 SLC30A10Q6XR72 485 aa24.79■■□□□ 1.56
VPS53-216ENST00000574029 USP38Q8NB14 1042 aa24.79■■□□□ 1.56
VPS53-216ENST00000574029 WNT8AQ9H1J5 351 aa24.79■■□□□ 1.56
VPS53-216ENST00000574029 MTIF3Q9H2K0 278 aaKnown RBP24.79■■□□□ 1.56
VPS53-216ENST00000574029 CCL23P55773 120 aa24.78■■□□□ 1.56
VPS53-216ENST00000574029 RNF207Q6ZRF8 634 aa24.78■■□□□ 1.56
VPS53-216ENST00000574029 MFSD6Q6ZSS7 791 aa24.78■■□□□ 1.56
VPS53-216ENST00000574029 ALDH8A1Q9H2A2 487 aaPredicted RBP24.78■■□□□ 1.56
VPS53-216ENST00000574029 POLR3EQ9NVU0 708 aa24.78■■□□□ 1.56
VPS53-216ENST00000574029 WDR19Q8NEZ3 1342 aa24.78■■□□□ 1.56
VPS53-216ENST00000574029 TRIM6-TRIM34B2RNG4 842 aa24.77■■□□□ 1.56
VPS53-216ENST00000574029 CALML3P27482 149 aa24.77■■□□□ 1.56
VPS53-216ENST00000574029 PURAQ00577 322 aaKnown RBP24.77■■□□□ 1.56
VPS53-216ENST00000574029 RAB30Q15771 203 aa24.77■■□□□ 1.56
VPS53-216ENST00000574029 TBC1D10CQ8IV04 446 aa24.77■■□□□ 1.56
VPS53-216ENST00000574029 LNPKQ9C0E8 428 aa24.77■■□□□ 1.56
VPS53-216ENST00000574029 EDNRBP24530 442 aa24.76■■□□□ 1.55
VPS53-216ENST00000574029 CPT1AP50416 773 aa24.76■■□□□ 1.55
VPS53-216ENST00000574029 OTOP2Q7RTS6 562 aa24.76■■□□□ 1.55
VPS53-216ENST00000574029 GAS2L1Q99501 681 aaPredicted RBP24.76■■□□□ 1.55
VPS53-216ENST00000574029 MSRAQ9UJ68 235 aa24.76■■□□□ 1.55
VPS53-216ENST00000574029 PRUNE2Q8WUY3 3088 aa24.75■■□□□ 1.55
VPS53-216ENST00000574029 LAMA4Q16363 1823 aa24.75■■□□□ 1.55
VPS53-216ENST00000574029 RPS6P62753 249 aaKnown RBP24.75■■□□□ 1.55
VPS53-216ENST00000574029 RPUSD2Q8IZ73 545 aaKnown RBP24.75■■□□□ 1.55
VPS53-216ENST00000574029 DNERQ8NFT8 737 aa24.75■■□□□ 1.55
VPS53-216ENST00000574029 SYMPKQ92797 1274 aaKnown RBP24.75■■□□□ 1.55
VPS53-216ENST00000574029 RILPL2Q969X0 211 aa24.75■■□□□ 1.55
VPS53-216ENST00000574029 VWCEQ96DN2 955 aa24.75■■□□□ 1.55
VPS53-216ENST00000574029 RNF41Q9H4P4 317 aaPredicted RBP24.75■■□□□ 1.55
VPS53-216ENST00000574029 PRDM12Q9H4Q4 367 aa24.75■■□□□ 1.55
VPS53-216ENST00000574029 NKRFO15226 690 aaKnown RBP eCLIP24.74■■□□□ 1.55
VPS53-216ENST00000574029 MYL3P08590 195 aa24.74■■□□□ 1.55
VPS53-216ENST00000574029 SUPT20HL2P0C7V6 817 aa24.74■■□□□ 1.55
VPS53-216ENST00000574029 SDSP20132 328 aa24.74■■□□□ 1.55
VPS53-216ENST00000574029 MFAP1P55081 439 aaKnown RBP24.74■■□□□ 1.55
VPS53-216ENST00000574029 PDE4DQ08499 809 aa24.74■■□□□ 1.55
VPS53-216ENST00000574029 SMC5Q8IY18 1101 aa24.74■■□□□ 1.55
VPS53-216ENST00000574029 OR6J1Q8NGC5 347 aa24.74■■□□□ 1.55
VPS53-216ENST00000574029 ESR2Q92731 530 aa24.74■■□□□ 1.55
VPS53-216ENST00000574029 MPHOSPH6Q99547 160 aaKnown RBP24.74■■□□□ 1.55
VPS53-216ENST00000574029 MTG1Q9BT17 334 aaPredicted RBP24.74■■□□□ 1.55
VPS53-216ENST00000574029 TRMT13Q9NUP7 481 aaKnown RBP24.74■■□□□ 1.55
VPS53-216ENST00000574029 SCN10AQ9Y5Y9 1956 aa24.73■■□□□ 1.55
VPS53-216ENST00000574029 TNKSO95271 1327 aa24.73■■□□□ 1.55
VPS53-216ENST00000574029 NEDD4P46934 1319 aa24.73■■□□□ 1.55
VPS53-216ENST00000574029 AAMPQ13685 434 aa24.73■■□□□ 1.55
VPS53-216ENST00000574029 GPATCH4Q5T3I0 446 aaKnown RBP24.73■■□□□ 1.55
VPS53-216ENST00000574029 DGKHQ86XP1 1220 aa24.73■■□□□ 1.55
VPS53-216ENST00000574029 SCLYQ96I15 445 aa24.73■■□□□ 1.55
VPS53-216ENST00000574029 NKX2-4Q9H2Z4 354 aa24.73■■□□□ 1.55
VPS53-216ENST00000574029 YBX2Q9Y2T7 364 aaKnown RBP24.73■■□□□ 1.55
VPS53-216ENST00000574029 VCANP13611 3396 aa24.73■■□□□ 1.55
VPS53-216ENST00000574029 NT5C2P49902 561 aa24.72■■□□□ 1.55
VPS53-216ENST00000574029 PPP2R5BQ15173 497 aa24.72■■□□□ 1.55
VPS53-216ENST00000574029 RGS22Q8NE09 1264 aa24.72■■□□□ 1.55
VPS53-216ENST00000574029 SCFD2Q8WU76 684 aa24.72■■□□□ 1.55
VPS53-216ENST00000574029 ZKSCAN3Q9BRR0 538 aa24.72■■□□□ 1.55
VPS53-216ENST00000574029 GPHNQ9NQX3 736 aaPredicted RBP24.72■■□□□ 1.55
VPS53-216ENST00000574029 RAD50Q92878 1312 aa24.71■■□□□ 1.55
VPS53-216ENST00000574029 ZNF213O14771 459 aa24.71■■□□□ 1.55
VPS53-216ENST00000574029 GOLGA8HP0CJ92 632 aa24.71■■□□□ 1.55
VPS53-216ENST00000574029 CYP2C9P11712 490 aa24.71■■□□□ 1.55
VPS53-216ENST00000574029 BRDTQ58F21 947 aaPredicted RBP24.71■■□□□ 1.55
VPS53-216ENST00000574029 OSBPL3Q9H4L5 887 aa24.71■■□□□ 1.55
VPS53-216ENST00000574029 SLC28A3Q9HAS3 691 aa24.71■■□□□ 1.55
VPS53-216ENST00000574029 SLC4A7Q9Y6M7 1214 aa24.71■■□□□ 1.55
VPS53-216ENST00000574029 A6NJR5 290 aa24.7■■□□□ 1.54
VPS53-216ENST00000574029 B4DLN1 442 aa24.7■■□□□ 1.54
VPS53-216ENST00000574029 KPNA6O60684 536 aa24.7■■□□□ 1.54
VPS53-216ENST00000574029 PFKMP08237 780 aa24.7■■□□□ 1.54
VPS53-216ENST00000574029 MRPL12P52815 198 aaKnown RBP24.7■■□□□ 1.54
VPS53-216ENST00000574029 ADGRE1Q14246 886 aa24.7■■□□□ 1.54
VPS53-216ENST00000574029 TJAP1Q5JTD0 557 aa24.7■■□□□ 1.54
VPS53-216ENST00000574029 PLEKHM2Q8IWE5 1019 aa24.7■■□□□ 1.54
VPS53-216ENST00000574029 MAF1Q9H063 256 aa24.7■■□□□ 1.54
VPS53-216ENST00000574029 CPVLQ9H3G5 476 aa24.7■■□□□ 1.54
VPS53-216ENST00000574029 PRDM6Q9NQX0 595 aa24.7■■□□□ 1.54
VPS53-216ENST00000574029 NBPF20Q3BBV1 942 aa24.69■■□□□ 1.54
VPS53-216ENST00000574029 USH1GQ495M9 461 aa24.69■■□□□ 1.54
VPS53-216ENST00000574029 CCDC178Q5BJE1 867 aa24.69■■□□□ 1.54
VPS53-216ENST00000574029 B4GALNT3Q6L9W6 998 aa24.69■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms