RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 FSD2A1L4K1 749 aa11.31□□□□□ -0.6
SMG6-213ENST00000573166 GLTPD2A6NH11 291 aa11.31□□□□□ -0.6
SMG6-213ENST00000573166 LAD1O00515 517 aa11.31□□□□□ -0.6
SMG6-213ENST00000573166 FCER1AP12319 257 aa11.31□□□□□ -0.6
SMG6-213ENST00000573166 CMA1P23946 247 aa11.31□□□□□ -0.6
SMG6-213ENST00000573166 LONP1P36776 959 aaKnown RBP11.31□□□□□ -0.6
SMG6-213ENST00000573166 WDR11Q9BZH6 1224 aa11.31□□□□□ -0.6
SMG6-213ENST00000573166 AP5M1Q9H0R1 490 aa11.31□□□□□ -0.6
SMG6-213ENST00000573166 ZNF541Q9H0D2 1346 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 TRIM21P19474 475 aaKnown RBP11.3□□□□□ -0.6
SMG6-213ENST00000573166 CDC25AP30304 524 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 SPAG1Q07617 926 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 RESTQ13127 1097 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 CNNM4Q6P4Q7 775 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 METTL13Q8N6R0 699 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 PKD1L3Q7Z443 1732 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 BICDL2A1A5D9 508 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 PHACTR2O75167 634 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 USP8P40818 1118 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 BACE1P56817 501 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 POSTNQ15063 836 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.3□□□□□ -0.6
SMG6-213ENST00000573166 SYMPKQ92797 1274 aaKnown RBP11.3□□□□□ -0.6
SMG6-213ENST00000573166 ERCC4Q92889 916 aaPredicted RBP11.3□□□□□ -0.6
SMG6-213ENST00000573166 ATG4CQ96DT6 458 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 CSRNP2Q9H175 543 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 BLZF1Q9H2G9 400 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 SUGCTQ9HAC7 445 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 TMEM260Q9NX78 707 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 FZD1Q9UP38 647 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 BAZ2BQ9UIF8 2168 aaKnown RBP11.3□□□□□ -0.6
SMG6-213ENST00000573166 TRAF5O00463 557 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 ARHGAP4P98171 946 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 KARSQ15046 597 aaKnown RBP11.3□□□□□ -0.6
SMG6-213ENST00000573166 PPP1R18Q6NYC8 613 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 GPBP1Q86WP2 473 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 CDCA5Q96FF9 252 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 CLSTN2Q9H4D0 955 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 KIAA1024Q9UPX6 916 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 KDM3BQ7LBC6 1761 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 TNPO2O14787 897 aaKnown RBP11.3□□□□□ -0.6
SMG6-213ENST00000573166 SFPQP23246 707 aaKnown RBP eCLIP11.3□□□□□ -0.6
SMG6-213ENST00000573166 STXBP2Q15833 593 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 LINC00301Q8NCQ3 95 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 PARK7Q99497 189 aaKnown RBP11.3□□□□□ -0.6
SMG6-213ENST00000573166 RBSNQ9H1K0 784 aa11.3□□□□□ -0.6
SMG6-213ENST00000573166 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.3□□□□□ -0.6
SMG6-213ENST00000573166 ATP6V0A1Q93050 837 aa11.29□□□□□ -0.6
SMG6-213ENST00000573166 RPL13P26373 211 aaKnown RBP11.29□□□□□ -0.6
SMG6-213ENST00000573166 MMP19Q99542 508 aa11.29□□□□□ -0.6
SMG6-213ENST00000573166 PRDM10Q9NQV6 1147 aa11.29□□□□□ -0.6
SMG6-213ENST00000573166 UQCRHLA0A096LP55 91 aa11.29□□□□□ -0.6
SMG6-213ENST00000573166 SHTN1A0MZ66 631 aa11.29□□□□□ -0.6
SMG6-213ENST00000573166 UQCRHP07919 91 aa11.29□□□□□ -0.6
SMG6-213ENST00000573166 IGBP1P78318 339 aa11.29□□□□□ -0.6
SMG6-213ENST00000573166 FAM160B1Q5W0V3 765 aa11.29□□□□□ -0.6
SMG6-213ENST00000573166 ZMYND15Q9H091 742 aa11.29□□□□□ -0.6
SMG6-213ENST00000573166 JMJD4Q9H9V9 463 aa11.29□□□□□ -0.6
SMG6-213ENST00000573166 NRBP2Q9NSY0 501 aa11.29□□□□□ -0.6
SMG6-213ENST00000573166 TMX2Q9Y320 296 aa11.29□□□□□ -0.6
SMG6-213ENST00000573166 SMIM22K7EJ46 135 aa11.28□□□□□ -0.6
SMG6-213ENST00000573166 NR1I2O75469 434 aa11.28□□□□□ -0.6
SMG6-213ENST00000573166 COPB2P35606 906 aa11.28□□□□□ -0.6
SMG6-213ENST00000573166 GTF2A2P52657 109 aa11.28□□□□□ -0.6
SMG6-213ENST00000573166 UBASH3AP57075 661 aa11.28□□□□□ -0.6
SMG6-213ENST00000573166 STRN3Q13033 797 aa11.28□□□□□ -0.6
SMG6-213ENST00000573166 KCNB2Q92953 911 aa11.28□□□□□ -0.6
SMG6-213ENST00000573166 MRPL44Q9H9J2 332 aaKnown RBP11.28□□□□□ -0.6
SMG6-213ENST00000573166 RCOR1Q9UKL0 485 aa11.28□□□□□ -0.6
SMG6-213ENST00000573166 SLURP2P0DP57 97 aa11.28□□□□□ -0.6
SMG6-213ENST00000573166 BAATQ14032 418 aaPredicted RBP11.28□□□□□ -0.6
SMG6-213ENST00000573166 CEP135Q66GS9 1140 aa11.28□□□□□ -0.6
SMG6-213ENST00000573166 TMEM87AQ8NBN3 555 aa11.28□□□□□ -0.6
SMG6-213ENST00000573166 DNAI2Q9GZS0 605 aa11.28□□□□□ -0.6
SMG6-213ENST00000573166 CRYBG1Q9Y4K1 1723 aa11.28□□□□□ -0.6
SMG6-213ENST00000573166 PPP6R2O75170 966 aa11.28□□□□□ -0.6
SMG6-213ENST00000573166 MTMR1Q13613 665 aa11.28□□□□□ -0.6
SMG6-213ENST00000573166 TDRD12Q587J7 1177 aaKnown RBP11.28□□□□□ -0.6
SMG6-213ENST00000573166 FAM102BQ5T8I3 360 aa11.28□□□□□ -0.6
SMG6-213ENST00000573166 OPTNQ96CV9 577 aa11.28□□□□□ -0.6
SMG6-213ENST00000573166 MAP3K14Q99558 947 aa11.28□□□□□ -0.6
SMG6-213ENST00000573166 M0QZ92 97 aa11.27□□□□□ -0.6
SMG6-213ENST00000573166 GCNT3O95395 438 aa11.27□□□□□ -0.6
SMG6-213ENST00000573166 NDUFA8P51970 172 aa11.27□□□□□ -0.6
SMG6-213ENST00000573166 AK8Q96MA6 479 aa11.27□□□□□ -0.6
SMG6-213ENST00000573166 ZFYVE28Q9HCC9 887 aa11.27□□□□□ -0.6
SMG6-213ENST00000573166 PPP1R2P41236 205 aa11.27□□□□□ -0.61
SMG6-213ENST00000573166 SEC23AQ15436 765 aa11.27□□□□□ -0.61
SMG6-213ENST00000573166 TMC6Q7Z403 805 aa11.27□□□□□ -0.61
SMG6-213ENST00000573166 NELFCDQ8IXH7 590 aa11.27□□□□□ -0.61
SMG6-213ENST00000573166 MB21D1Q8N884 522 aa11.27□□□□□ -0.61
SMG6-213ENST00000573166 AGBL1Q96MI9 1066 aa11.27□□□□□ -0.61
SMG6-213ENST00000573166 LARSQ9P2J5 1176 aaKnown RBP11.27□□□□□ -0.61
SMG6-213ENST00000573166 CICQ96RK0 1608 aaPredicted RBP11.27□□□□□ -0.61
SMG6-213ENST00000573166 POTEJP0CG39 1038 aa11.27□□□□□ -0.61
SMG6-213ENST00000573166 PNOCQ13519 176 aa11.27□□□□□ -0.61
SMG6-213ENST00000573166 HOXD10P28358 340 aa11.27□□□□□ -0.61
SMG6-213ENST00000573166 POLGP54098 1239 aaPredicted RBP11.27□□□□□ -0.61
SMG6-213ENST00000573166 ZC3H15Q8WU90 426 aaKnown RBP11.27□□□□□ -0.61
SMG6-213ENST00000573166 SPAG5Q96R06 1193 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms