RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 ATG4CQ96DT6 458 aa8.82□□□□□ -1
NUP88-205ENST00000572809 CEP95Q96GE4 821 aa8.82□□□□□ -1
NUP88-205ENST00000572809 FAM227BQ96M60 508 aa8.82□□□□□ -1
NUP88-205ENST00000572809 SPATC1LQ9H0A9 340 aa8.82□□□□□ -1
NUP88-205ENST00000572809 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.82□□□□□ -1
NUP88-205ENST00000572809 PAK6Q9NQU5 681 aaPredicted RBP8.82□□□□□ -1
NUP88-205ENST00000572809 MTMR4Q9NYA4 1195 aa8.82□□□□□ -1
NUP88-205ENST00000572809 ADAMTS5Q9UNA0 930 aa8.82□□□□□ -1
NUP88-205ENST00000572809 A0A0D9SFI3 127 aa8.81□□□□□ -1
NUP88-205ENST00000572809 FOXP2O15409 715 aa8.81□□□□□ -1
NUP88-205ENST00000572809 TTLL1O95922 423 aa8.81□□□□□ -1
NUP88-205ENST00000572809 FGAP02671 866 aa8.81□□□□□ -1
NUP88-205ENST00000572809 ZKSCAN1P17029 563 aaPredicted RBP8.81□□□□□ -1
NUP88-205ENST00000572809 ERCC3P19447 782 aa8.81□□□□□ -1
NUP88-205ENST00000572809 CACNB2Q08289 660 aaPredicted RBP8.81□□□□□ -1
NUP88-205ENST00000572809 DPP9Q86TI2 863 aa8.81□□□□□ -1
NUP88-205ENST00000572809 NCAPG2Q86XI2 1143 aa8.81□□□□□ -1
NUP88-205ENST00000572809 SHCBP1Q8NEM2 672 aa8.81□□□□□ -1
NUP88-205ENST00000572809 DPF3Q92784 378 aa8.81□□□□□ -1
NUP88-205ENST00000572809 SYMPKQ92797 1274 aaKnown RBP8.81□□□□□ -1
NUP88-205ENST00000572809 APBA2Q99767 749 aa8.81□□□□□ -1
NUP88-205ENST00000572809 MROH8Q9H579 483 aa8.81□□□□□ -1
NUP88-205ENST00000572809 INCENPQ9NQS7 918 aa8.81□□□□□ -1
NUP88-205ENST00000572809 FBXO28Q9NVF7 368 aa8.81□□□□□ -1
NUP88-205ENST00000572809 ANAPC4Q9UJX5 808 aa8.81□□□□□ -1
NUP88-205ENST00000572809 HTTP42858 3142 aa8.8□□□□□ -1
NUP88-205ENST00000572809 TNRC18O15417 2968 aaPredicted RBP8.8□□□□□ -1
NUP88-205ENST00000572809 PLXNB2O15031 1838 aa8.8□□□□□ -1
NUP88-205ENST00000572809 TSPY2A6NKD2 308 aa8.8□□□□□ -1
NUP88-205ENST00000572809 VWA5AO00534 786 aa8.8□□□□□ -1
NUP88-205ENST00000572809 RANBP6O60518 1105 aaKnown RBP8.8□□□□□ -1
NUP88-205ENST00000572809 DXOO77932 396 aaKnown RBP8.8□□□□□ -1
NUP88-205ENST00000572809 SLC25A27O95847 323 aa8.8□□□□□ -1
NUP88-205ENST00000572809 NDUFB10O96000 172 aa8.8□□□□□ -1
NUP88-205ENST00000572809 HOXC6P09630 235 aa8.8□□□□□ -1
NUP88-205ENST00000572809 HSPD1P10809 573 aaKnown RBP8.8□□□□□ -1
NUP88-205ENST00000572809 STAT3P40763 770 aa8.8□□□□□ -1
NUP88-205ENST00000572809 MFAP1P55081 439 aaKnown RBP8.8□□□□□ -1
NUP88-205ENST00000572809 GRB14Q14449 540 aa8.8□□□□□ -1
NUP88-205ENST00000572809 TMEM132BQ14DG7 1078 aa8.8□□□□□ -1
NUP88-205ENST00000572809 MAP3K21Q5TCX8 1036 aa8.8□□□□□ -1
NUP88-205ENST00000572809 MFSD14CQ5VZR4 134 aa8.8□□□□□ -1
NUP88-205ENST00000572809 UBE2Q1Q7Z7E8 422 aa8.8□□□□□ -1
NUP88-205ENST00000572809 RIOX2Q8IUF8 465 aa8.8□□□□□ -1
NUP88-205ENST00000572809 PRPF38AQ8NAV1 312 aaKnown RBP8.8□□□□□ -1
NUP88-205ENST00000572809 NPLOC4Q8TAT6 608 aa8.8□□□□□ -1
NUP88-205ENST00000572809 LRRN4Q8WUT4 740 aa8.8□□□□□ -1
NUP88-205ENST00000572809 NUP88Q99567 741 aaPredicted RBP8.8□□□□□ -1
NUP88-205ENST00000572809 SLF1Q9BQI6 1058 aa8.8□□□□□ -1
NUP88-205ENST00000572809 HTATIP2Q9BUP3 242 aa8.8□□□□□ -1
NUP88-205ENST00000572809 SLC5A4Q9NY91 659 aa8.8□□□□□ -1
NUP88-205ENST00000572809 FLRT1Q9NZU1 646 aa8.8□□□□□ -1
NUP88-205ENST00000572809 PPP1R9AQ9ULJ8 1098 aa8.8□□□□□ -1
NUP88-205ENST00000572809 SYNPO2Q9UMS6 1093 aa8.8□□□□□ -1
NUP88-205ENST00000572809 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.8□□□□□ -1
NUP88-205ENST00000572809 PDE4DIPQ5VU43 2346 aa8.79□□□□□ -1
NUP88-205ENST00000572809 HIP1O00291 1037 aa8.79□□□□□ -1
NUP88-205ENST00000572809 ZBED4O75132 1171 aa8.79□□□□□ -1
NUP88-205ENST00000572809 FARP2O94887 1054 aaPredicted RBP8.79□□□□□ -1
NUP88-205ENST00000572809 FGRP09769 529 aa8.79□□□□□ -1
NUP88-205ENST00000572809 FCER1AP12319 257 aa8.79□□□□□ -1
NUP88-205ENST00000572809 BMP1P13497 986 aa8.79□□□□□ -1
NUP88-205ENST00000572809 PDIA4P13667 645 aaKnown RBP8.79□□□□□ -1
NUP88-205ENST00000572809 ADORA2AP29274 412 aa8.79□□□□□ -1
NUP88-205ENST00000572809 CCND3P30281 292 aaPredicted RBP8.79□□□□□ -1
NUP88-205ENST00000572809 SLFN13Q68D06 897 aa8.79□□□□□ -1
NUP88-205ENST00000572809 DESI1Q6ICB0 168 aa8.79□□□□□ -1
NUP88-205ENST00000572809 CWC27Q6UX04 472 aaKnown RBP8.79□□□□□ -1
NUP88-205ENST00000572809 TRIM46Q7Z4K8 759 aa8.79□□□□□ -1
NUP88-205ENST00000572809 ZNF589Q86UQ0 364 aaPredicted RBP8.79□□□□□ -1
NUP88-205ENST00000572809 NPAS3Q8IXF0 933 aa8.79□□□□□ -1
NUP88-205ENST00000572809 ABRAQ8N0Z2 381 aa8.79□□□□□ -1
NUP88-205ENST00000572809 LRRC47Q8N1G4 583 aaKnown RBP8.79□□□□□ -1
NUP88-205ENST00000572809 PNMA1Q8ND90 353 aa8.79□□□□□ -1
NUP88-205ENST00000572809 GMCL1P1Q8NEA9 526 aa8.79□□□□□ -1
NUP88-205ENST00000572809 PAWRQ96IZ0 340 aaKnown RBP8.79□□□□□ -1
NUP88-205ENST00000572809 USB1Q9BQ65 265 aaKnown RBP8.79□□□□□ -1
NUP88-205ENST00000572809 IL17RBQ9NRM6 502 aa8.79□□□□□ -1
NUP88-205ENST00000572809 TOMM22Q9NS69 142 aa8.79□□□□□ -1
NUP88-205ENST00000572809 FEM1BQ9UK73 627 aa8.79□□□□□ -1
NUP88-205ENST00000572809 STX8Q9UNK0 236 aa8.79□□□□□ -1
NUP88-205ENST00000572809 CTDP1Q9Y5B0 961 aaPredicted RBP8.79□□□□□ -1
NUP88-205ENST00000572809 TACC3Q9Y6A5 838 aa8.79□□□□□ -1
NUP88-205ENST00000572809 RLFQ13129 1914 aa8.79□□□□□ -1
NUP88-205ENST00000572809 CCDC171Q6TFL3 1326 aa8.79□□□□□ -1
NUP88-205ENST00000572809 CENPFP49454 3210 aa8.78□□□□□ -1
NUP88-205ENST00000572809 TMEM232C9JQI7 657 aa8.78□□□□□ -1
NUP88-205ENST00000572809 ORC4O43929 436 aa8.78□□□□□ -1
NUP88-205ENST00000572809 COBLO75128 1261 aa8.78□□□□□ -1
NUP88-205ENST00000572809 BMP3P12645 472 aa8.78□□□□□ -1
NUP88-205ENST00000572809 CNGA1P29973 690 aa8.78□□□□□ -1
NUP88-205ENST00000572809 CYP2C19P33261 490 aa8.78□□□□□ -1
NUP88-205ENST00000572809 WNT7BP56706 349 aa8.78□□□□□ -1
NUP88-205ENST00000572809 KCTD2Q14681 263 aa8.78□□□□□ -1
NUP88-205ENST00000572809 RRP12Q5JTH9 1297 aaKnown RBP8.78□□□□□ -1
NUP88-205ENST00000572809 OLFML2BQ68BL8 750 aa8.78□□□□□ -1
NUP88-205ENST00000572809 NECAB2Q7Z6G3 386 aa8.78□□□□□ -1
NUP88-205ENST00000572809 CPXCR1Q8N123 301 aa8.78□□□□□ -1
NUP88-205ENST00000572809 REPS2Q8NFH8 660 aa8.78□□□□□ -1
NUP88-205ENST00000572809 DIAPH3Q9NSV4 1193 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms