RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 ZBTB9Q96C00 473 aa11.15□□□□□ -0.62
VPS53-206ENST00000570359 CALML4Q96GE6 196 aa11.15□□□□□ -0.62
VPS53-206ENST00000570359 IRX2Q9BZI1 471 aaPredicted RBP11.15□□□□□ -0.62
VPS53-206ENST00000570359 DDX25Q9UHL0 483 aaKnown RBP11.15□□□□□ -0.62
VPS53-206ENST00000570359 IGKV6D-41A0A0C4DH26 115 aa11.15□□□□□ -0.63
VPS53-206ENST00000570359 STK4Q13043 487 aa11.15□□□□□ -0.63
VPS53-206ENST00000570359 NR1I3Q14994 352 aa11.15□□□□□ -0.63
VPS53-206ENST00000570359 A0A1B0GTH6 734 aa11.14□□□□□ -0.63
VPS53-206ENST00000570359 SHTN1A0MZ66 631 aa11.14□□□□□ -0.63
VPS53-206ENST00000570359 SPDYE4A6NLX3 237 aa11.14□□□□□ -0.63
VPS53-206ENST00000570359 AKR1B15C9JRZ8 316 aaPredicted RBP11.14□□□□□ -0.63
VPS53-206ENST00000570359 F5H6K3 240 aa11.14□□□□□ -0.63
VPS53-206ENST00000570359 ZBTB5O15062 677 aa11.14□□□□□ -0.63
VPS53-206ENST00000570359 URI1O94763 535 aaPredicted RBP11.14□□□□□ -0.63
VPS53-206ENST00000570359 FXR1P51114 621 aaKnown RBP eCLIP11.14□□□□□ -0.63
VPS53-206ENST00000570359 KLRC3Q07444 240 aa11.14□□□□□ -0.63
VPS53-206ENST00000570359 TMEM266Q2M3C6 531 aa11.14□□□□□ -0.63
VPS53-206ENST00000570359 CCDC174Q6PII3 467 aa11.14□□□□□ -0.63
VPS53-206ENST00000570359 KCNK18Q7Z418 384 aa11.14□□□□□ -0.63
VPS53-206ENST00000570359 GLIS3Q8NEA6 775 aa11.14□□□□□ -0.63
VPS53-206ENST00000570359 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.14□□□□□ -0.63
VPS53-206ENST00000570359 RMND1Q9NWS8 449 aa11.14□□□□□ -0.63
VPS53-206ENST00000570359 PPP2R2CQ9Y2T4 447 aa11.14□□□□□ -0.63
VPS53-206ENST00000570359 SUGT1Q9Y2Z0 365 aa11.14□□□□□ -0.63
VPS53-206ENST00000570359 PSMD14O00487 310 aa11.14□□□□□ -0.63
VPS53-206ENST00000570359 NKRFO15226 690 aaKnown RBP eCLIP11.14□□□□□ -0.63
VPS53-206ENST00000570359 ZBTB7AO95365 584 aa11.14□□□□□ -0.63
VPS53-206ENST00000570359 UTP14CQ5TAP6 766 aaKnown RBP11.14□□□□□ -0.63
VPS53-206ENST00000570359 ELOA2Q8IYF1 753 aaPredicted RBP11.14□□□□□ -0.63
VPS53-206ENST00000570359 MMTAG2Q9BU76 263 aaKnown RBP11.14□□□□□ -0.63
VPS53-206ENST00000570359 ADD3Q9UEY8 706 aaKnown RBP11.14□□□□□ -0.63
VPS53-206ENST00000570359 NRXN2Q9P2S2 1712 aa11.14□□□□□ -0.63
VPS53-206ENST00000570359 RNF225M0QZC1 329 aaPredicted RBP11.13□□□□□ -0.63
VPS53-206ENST00000570359 NDUFB10O96000 172 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 KLK7P49862 253 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 COPB1P53618 953 aaKnown RBP11.13□□□□□ -0.63
VPS53-206ENST00000570359 GNG11P61952 73 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 STYK1Q6J9G0 422 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 APTXQ7Z2E3 356 aaKnown RBP11.13□□□□□ -0.63
VPS53-206ENST00000570359 CSGALNACT2Q8N6G5 542 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 ANKRD20A12PQ8NF67 263 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 ACER1Q8TDN7 264 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 SMCHD1A6NHR9 2005 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 NPHP3-ACAD11A0A0J9YXS1 232 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 B4DLN1 442 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 PSMA7O14818 248 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 EDIL3O43854 480 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 KLRC4O43908 158 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 DPEP1P16444 411 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 NCBP1Q09161 790 aaKnown RBP11.13□□□□□ -0.63
VPS53-206ENST00000570359 GRB10Q13322 594 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 STIM1Q13586 685 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 ELF2Q15723 593 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 ECM1Q16610 540 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 PRR16Q569H4 304 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 TCP11X2Q5H9J9 407 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 CDKAL1Q5VV42 579 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 TRMT1LQ7Z2T5 733 aaKnown RBP11.13□□□□□ -0.63
VPS53-206ENST00000570359 TMEM139Q8IV31 216 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 TRIM9Q9C026 710 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 TMEM39BQ9GZU3 492 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 ZSWIM4Q9H7M6 989 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 TMOD2Q9NZR1 351 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 MAGEC2Q9UBF1 373 aaPredicted RBP11.13□□□□□ -0.63
VPS53-206ENST00000570359 RWDD2AQ9UIY3 292 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 PAXBP1Q9Y5B6 917 aa11.13□□□□□ -0.63
VPS53-206ENST00000570359 A0A1W2PRG0 241 aa11.12□□□□□ -0.63
VPS53-206ENST00000570359 MEIS1O00470 390 aa11.12□□□□□ -0.63
VPS53-206ENST00000570359 GYPCP04921 128 aa11.12□□□□□ -0.63
VPS53-206ENST00000570359 MRPL12P52815 198 aaKnown RBP11.12□□□□□ -0.63
VPS53-206ENST00000570359 PPP4R3BQ5MIZ7 849 aa11.12□□□□□ -0.63
VPS53-206ENST00000570359 GPATCH4Q5T3I0 446 aaKnown RBP11.12□□□□□ -0.63
VPS53-206ENST00000570359 SIAH1Q8IUQ4 282 aa11.12□□□□□ -0.63
VPS53-206ENST00000570359 ACRBPQ8NEB7 543 aa11.12□□□□□ -0.63
VPS53-206ENST00000570359 KIFC2Q96AC6 838 aa11.12□□□□□ -0.63
VPS53-206ENST00000570359 KANSL2Q9H9L4 492 aa11.12□□□□□ -0.63
VPS53-206ENST00000570359 TFR2Q9UP52 801 aa11.12□□□□□ -0.63
VPS53-206ENST00000570359 ATF5Q9Y2D1 282 aaPredicted RBP11.12□□□□□ -0.63
VPS53-206ENST00000570359 MYMKA6NI61 221 aa11.12□□□□□ -0.63
VPS53-206ENST00000570359 SNHG28P0DPA3 235 aa11.12□□□□□ -0.63
VPS53-206ENST00000570359 MTIF2P46199 727 aaKnown RBP11.12□□□□□ -0.63
VPS53-206ENST00000570359 TBX2Q13207 712 aaPredicted RBP11.12□□□□□ -0.63
VPS53-206ENST00000570359 KRT79Q5XKE5 535 aa11.12□□□□□ -0.63
VPS53-206ENST00000570359 RAD9BQ6WBX8 426 aa11.12□□□□□ -0.63
VPS53-206ENST00000570359 SV2BQ7L1I2 683 aa11.12□□□□□ -0.63
VPS53-206ENST00000570359 ADSSL1Q8N142 457 aa11.12□□□□□ -0.63
VPS53-206ENST00000570359 PDCL2Q8N4E4 241 aa11.12□□□□□ -0.63
VPS53-206ENST00000570359 PYM1Q9BRP8 204 aaKnown RBP11.12□□□□□ -0.63
VPS53-206ENST00000570359 CCSER1Q9C0I3 900 aa11.12□□□□□ -0.63
VPS53-206ENST00000570359 MRPL44Q9H9J2 332 aaKnown RBP11.12□□□□□ -0.63
VPS53-206ENST00000570359 RIC8AQ9NPQ8 531 aa11.12□□□□□ -0.63
VPS53-206ENST00000570359 KBTBD4Q9NVX7 518 aa11.12□□□□□ -0.63
VPS53-206ENST00000570359 FOCADQ5VW36 1801 aa11.12□□□□□ -0.63
VPS53-206ENST00000570359 E9PMD0 336 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 ARHGAP6O43182 974 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 CYP4A11Q02928 519 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 DGKZQ13574 1117 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 DLGAP5Q15398 846 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 ANKRD40Q6AI12 368 aa11.11□□□□□ -0.63
VPS53-206ENST00000570359 NELFCDQ8IXH7 590 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms