RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 ELAC2Q9BQ52 826 aaKnown RBP3.68□□□□□ -1.82
VPS35-209ENST00000568642 PLCB1Q9NQ66 1216 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 NDFIP2Q9NV92 336 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 TRHDEQ9UKU6 1024 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 ZBTB21Q9ULJ3 1066 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 GTF2A1LQ9UNN4 478 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 GPR52Q9Y2T5 361 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 SUPT16HQ9Y5B9 1047 aaKnown RBP3.68□□□□□ -1.82
VPS35-209ENST00000568642 PIK3C2AO00443 1686 aa3.68□□□□□ -1.82
VPS35-209ENST00000568642 KIAA0100Q14667 2235 aaKnown RBP3.67□□□□□ -1.82
VPS35-209ENST00000568642 CCDC88AQ3V6T2 1871 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 PIK3R4Q99570 1358 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 PLEKHG1Q9ULL1 1385 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 MKI67P46013 3256 aaKnown RBP3.67□□□□□ -1.82
VPS35-209ENST00000568642 SPATA31C2B4DYI2 1134 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 BNIP3LO60238 219 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 SNX2O60749 519 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 DNAJC8O75937 253 aaPredicted RBP3.67□□□□□ -1.82
VPS35-209ENST00000568642 ZRANB2O95218 330 aaKnown RBP eCLIP3.67□□□□□ -1.82
VPS35-209ENST00000568642 IFIT2P09913 472 aaKnown RBP3.67□□□□□ -1.82
VPS35-209ENST00000568642 FAM200BP0CF97 657 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 PHKG2P15735 406 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 TNFAIP3P21580 790 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 CASP2P42575 452 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 LIG3P49916 1009 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 RENBPP51606 427 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 IRAK1P51617 712 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 USP14P54578 494 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 EIF5P55010 431 aaKnown RBP3.67□□□□□ -1.82
VPS35-209ENST00000568642 EIF6P56537 245 aaKnown RBP3.67□□□□□ -1.82
VPS35-209ENST00000568642 PSMA6P60900 246 aaKnown RBP3.67□□□□□ -1.82
VPS35-209ENST00000568642 CLCQ05315 142 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 MAP3K12Q12852 859 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 TXNRD1Q16881 649 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 SLC4A8Q2Y0W8 1093 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 SLC27A3Q5K4L6 730 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 SLC10A5Q5PT55 438 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 RASIP1Q5U651 963 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 PEAR1Q5VY43 1037 aaPredicted RBP3.67□□□□□ -1.82
VPS35-209ENST00000568642 CC2D1AQ6P1N0 951 aaPredicted RBP3.67□□□□□ -1.82
VPS35-209ENST00000568642 B3GNT9Q6UX72 402 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 DDX46Q7L014 1031 aaKnown RBP3.67□□□□□ -1.82
VPS35-209ENST00000568642 OTOP3Q7RTS5 596 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 HDGFL2Q7Z4V5 671 aaPredicted RBP3.67□□□□□ -1.82
VPS35-209ENST00000568642 LRRTM3Q86VH5 581 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 RASSF3Q86WH2 238 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 TREML1Q86YW5 311 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 PASD1Q8IV76 773 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 SMAP1Q8IYB5 467 aaPredicted RBP3.67□□□□□ -1.82
VPS35-209ENST00000568642 ALDH16A1Q8IZ83 802 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 ENAHQ8N8S7 591 aaPredicted RBP3.67□□□□□ -1.82
VPS35-209ENST00000568642 GOLM1Q8NBJ4 401 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 PPHLN1Q8NEY8 458 aaKnown RBP3.67□□□□□ -1.82
VPS35-209ENST00000568642 NKD1Q969G9 470 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 TBC1D20Q96BZ9 403 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 TTC14Q96N46 770 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 SMAD5Q99717 465 aaKnown RBP3.67□□□□□ -1.82
VPS35-209ENST00000568642 SELENOOQ9BVL4 669 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 SPATA9Q9BWV2 254 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 GRIP2Q9C0E4 1043 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 RSAD1Q9HA92 442 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 CRTAC1Q9NQ79 661 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 DZANK1Q9NVP4 752 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 KLHL11Q9NVR0 708 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 BTG4Q9NY30 223 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 ATXN7L1Q9ULK2 861 aaPredicted RBP3.67□□□□□ -1.82
VPS35-209ENST00000568642 ZNRF3Q9ULT6 936 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 NAP1L2Q9ULW6 460 aaPredicted RBP3.67□□□□□ -1.82
VPS35-209ENST00000568642 RNF112Q9ULX5 631 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 NOL7Q9UMY1 257 aaKnown RBP3.67□□□□□ -1.82
VPS35-209ENST00000568642 DGKBQ9Y6T7 804 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 RRBP1Q9P2E9 1410 aaKnown RBP3.67□□□□□ -1.82
VPS35-209ENST00000568642 KNDC1Q76NI1 1749 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 PARP4Q9UKK3 1724 aaKnown RBP3.67□□□□□ -1.82
VPS35-209ENST00000568642 MUC3AQ02505 3323 aa3.67□□□□□ -1.82
VPS35-209ENST00000568642 LRRC37A3O60309 1634 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 DHX29Q7Z478 1369 aaKnown RBP3.66□□□□□ -1.82
VPS35-209ENST00000568642 KIF15Q9NS87 1388 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 BDP1A6H8Y1 2624 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 A0A1B0GVC2 190 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 A0A1W2PQH9 124 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 BICDL2A1A5D9 508 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 RASSF10A6NK89 507 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 C9IYK1 514 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 K7ESF4 209 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 BACH1O14867 736 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 PLD2O14939 933 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 ORC4O43929 436 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 AGR2O95994 175 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 F13A1P00488 732 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 PTMAP06454 111 aaKnown RBP3.66□□□□□ -1.82
VPS35-209ENST00000568642 HSP90AA1P07900 732 aaKnown RBP3.66□□□□□ -1.82
VPS35-209ENST00000568642 CELA3AP09093 270 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 BPIP17213 487 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 HOXC13P31276 330 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 L1CAMP32004 1257 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 ID4P47928 161 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 SMTNP53814 917 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 GJA9P57773 515 aa3.66□□□□□ -1.82
VPS35-209ENST00000568642 TEAD4Q15561 434 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms