RNA–Protein interactions for RNA: ENST00000568443.2

CLN3-232, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 969 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-232ENST00000568443 DHX16O60231 1041 aaKnown RBP26.26■■□□□ 1.79
CLN3-232ENST00000568443 PTH1RQ03431 593 aa26.26■■□□□ 1.79
CLN3-232ENST00000568443 FSCN1Q16658 493 aaKnown RBP26.26■■□□□ 1.79
CLN3-232ENST00000568443 MPHOSPH6Q99547 160 aaKnown RBP26.26■■□□□ 1.79
CLN3-232ENST00000568443 LCTP09848 1927 aa26.26■■□□□ 1.79
CLN3-232ENST00000568443 ZEB2O60315 1214 aa26.25■■□□□ 1.79
CLN3-232ENST00000568443 ITGB8P26012 769 aa26.25■■□□□ 1.79
CLN3-232ENST00000568443 CDK7P50613 346 aa26.25■■□□□ 1.79
CLN3-232ENST00000568443 SHHQ15465 462 aa26.25■■□□□ 1.79
CLN3-232ENST00000568443 CDC37Q16543 378 aaPredicted RBP26.25■■□□□ 1.79
CLN3-232ENST00000568443 DEFB123Q8N688 67 aa26.25■■□□□ 1.79
CLN3-232ENST00000568443 RGS22Q8NE09 1264 aa26.25■■□□□ 1.79
CLN3-232ENST00000568443 VAT1LQ9HCJ6 419 aa26.25■■□□□ 1.79
CLN3-232ENST00000568443 Q9Y3F1 56 aa26.25■■□□□ 1.79
CLN3-232ENST00000568443 LAMA2P24043 3122 aaKnown RBP26.24■■□□□ 1.79
CLN3-232ENST00000568443 B4DLN1 442 aa26.24■■□□□ 1.79
CLN3-232ENST00000568443 ARVCFO00192 962 aa26.24■■□□□ 1.79
CLN3-232ENST00000568443 MRPL12P52815 198 aaKnown RBP26.24■■□□□ 1.79
CLN3-232ENST00000568443 PDE4DQ08499 809 aa26.24■■□□□ 1.79
CLN3-232ENST00000568443 CYB5R4Q7L1T6 521 aa26.24■■□□□ 1.79
CLN3-232ENST00000568443 DNERQ8NFT8 737 aa26.24■■□□□ 1.79
CLN3-232ENST00000568443 ABCB11O95342 1321 aa26.23■■□□□ 1.79
CLN3-232ENST00000568443 SGSM2O43147 1006 aa26.23■■□□□ 1.79
CLN3-232ENST00000568443 CABYRO75952 493 aa26.23■■□□□ 1.79
CLN3-232ENST00000568443 CYP21A2P08686 494 aa26.23■■□□□ 1.79
CLN3-232ENST00000568443 C9orf50Q5SZB4 431 aa26.23■■□□□ 1.79
CLN3-232ENST00000568443 TMEM63BQ5T3F8 832 aa26.23■■□□□ 1.79
CLN3-232ENST00000568443 CXCL17Q6UXB2 119 aa26.23■■□□□ 1.79
CLN3-232ENST00000568443 WDR11Q9BZH6 1224 aa26.23■■□□□ 1.79
CLN3-232ENST00000568443 PTGS1P23219 599 aa26.22■■□□□ 1.79
CLN3-232ENST00000568443 SEC23AQ15436 765 aa26.22■■□□□ 1.79
CLN3-232ENST00000568443 DUSP28Q4G0W2 176 aa26.22■■□□□ 1.79
CLN3-232ENST00000568443 Q7L0L9 218 aa26.22■■□□□ 1.79
CLN3-232ENST00000568443 RALYLQ86SE5 291 aaKnown RBP26.22■■□□□ 1.79
CLN3-232ENST00000568443 MAF1Q9H063 256 aa26.22■■□□□ 1.79
CLN3-232ENST00000568443 JMJD4Q9H9V9 463 aa26.22■■□□□ 1.79
CLN3-232ENST00000568443 LRRC37A2A6NM11 1700 aa26.22■■□□□ 1.79
CLN3-232ENST00000568443 TLR3O15455 904 aaKnown RBP26.21■■□□□ 1.79
CLN3-232ENST00000568443 FPGSQ05932 587 aa26.21■■□□□ 1.79
CLN3-232ENST00000568443 QRICH1Q2TAL8 776 aa26.21■■□□□ 1.79
CLN3-232ENST00000568443 FBXO11Q86XK2 927 aa26.21■■□□□ 1.79
CLN3-232ENST00000568443 RBM47A0AV96 593 aaKnown RBP26.2■■□□□ 1.78
CLN3-232ENST00000568443 ERICH2A1L162 156 aa26.2■■□□□ 1.78
CLN3-232ENST00000568443 IFIT3O14879 490 aaKnown RBP26.2■■□□□ 1.78
CLN3-232ENST00000568443 TIMP1P01033 207 aa26.2■■□□□ 1.78
CLN3-232ENST00000568443 MCF2L2Q86YR7 1114 aa26.2■■□□□ 1.78
CLN3-232ENST00000568443 STAG2Q8N3U4 1231 aa26.2■■□□□ 1.78
CLN3-232ENST00000568443 TBX21Q9UL17 535 aa26.2■■□□□ 1.78
CLN3-232ENST00000568443 MRPL11Q9Y3B7 192 aaKnown RBP26.2■■□□□ 1.78
CLN3-232ENST00000568443 KLRF2D3W0D1 207 aa26.19■■□□□ 1.78
CLN3-232ENST00000568443 E7EWF7 191 aa26.19■■□□□ 1.78
CLN3-232ENST00000568443 EDNRBP24530 442 aa26.19■■□□□ 1.78
CLN3-232ENST00000568443 NCOA7Q8NI08 942 aa26.19■■□□□ 1.78
CLN3-232ENST00000568443 TBC1D5Q92609 795 aa26.19■■□□□ 1.78
CLN3-232ENST00000568443 MAP4K1Q92918 833 aa26.19■■□□□ 1.78
CLN3-232ENST00000568443 ITGA7Q13683 1181 aa26.18■■□□□ 1.78
CLN3-232ENST00000568443 SART3Q15020 963 aaKnown RBP26.18■■□□□ 1.78
CLN3-232ENST00000568443 FAM126BQ8IXS8 530 aa26.18■■□□□ 1.78
CLN3-232ENST00000568443 MYH6P13533 1939 aa26.18■■□□□ 1.78
CLN3-232ENST00000568443 EPHB4P54760 987 aa26.17■■□□□ 1.78
CLN3-232ENST00000568443 SLC43A3Q8NBI5 491 aa26.17■■□□□ 1.78
CLN3-232ENST00000568443 SCFD2Q8WU76 684 aa26.17■■□□□ 1.78
CLN3-232ENST00000568443 AMNQ9BXJ7 453 aa26.17■■□□□ 1.78
CLN3-232ENST00000568443 SEZ6LQ9BYH1 1024 aa26.17■■□□□ 1.78
CLN3-232ENST00000568443 MTMR10Q9NXD2 777 aa26.17■■□□□ 1.78
CLN3-232ENST00000568443 MAD2L2Q9UI95 211 aa26.17■■□□□ 1.78
CLN3-232ENST00000568443 CPT1AP50416 773 aa26.16■■□□□ 1.78
CLN3-232ENST00000568443 WTAPQ15007 396 aa26.16■■□□□ 1.78
CLN3-232ENST00000568443 PPP2R5BQ15173 497 aa26.16■■□□□ 1.78
CLN3-232ENST00000568443 FAM109BQ6ICB4 259 aaPredicted RBP26.16■■□□□ 1.78
CLN3-232ENST00000568443 MFSD5Q6N075 450 aa26.16■■□□□ 1.78
CLN3-232ENST00000568443 OR6J1Q8NGC5 347 aa26.16■■□□□ 1.78
CLN3-232ENST00000568443 SYTL5Q8TDW5 730 aaPredicted RBP26.16■■□□□ 1.78
CLN3-232ENST00000568443 NSUN6Q8TEA1 469 aaKnown RBP26.16■■□□□ 1.78
CLN3-232ENST00000568443 TAAR1Q96RJ0 339 aa26.16■■□□□ 1.78
CLN3-232ENST00000568443 POLR3EQ9NVU0 708 aa26.16■■□□□ 1.78
CLN3-232ENST00000568443 TAF6LQ9Y6J9 622 aa26.16■■□□□ 1.78
CLN3-232ENST00000568443 PALM3A6NDB9 673 aaPredicted RBP26.15■■□□□ 1.78
CLN3-232ENST00000568443 NKRFO15226 690 aaKnown RBP eCLIP26.15■■□□□ 1.78
CLN3-232ENST00000568443 CD4P01730 458 aa26.15■■□□□ 1.78
CLN3-232ENST00000568443 BRDTQ58F21 947 aaPredicted RBP26.15■■□□□ 1.78
CLN3-232ENST00000568443 CHST3Q7LGC8 479 aa26.15■■□□□ 1.78
CLN3-232ENST00000568443 RNPC3Q96LT9 517 aaKnown RBP26.15■■□□□ 1.78
CLN3-232ENST00000568443 RBM8AQ9Y5S9 174 aaKnown RBP26.15■■□□□ 1.78
CLN3-232ENST00000568443 GRIN2DO15399 1336 aa26.14■■□□□ 1.78
CLN3-232ENST00000568443 TXNP10599 105 aaKnown RBP26.14■■□□□ 1.78
CLN3-232ENST00000568443 PSMC6P62333 389 aa26.14■■□□□ 1.78
CLN3-232ENST00000568443 STOX1Q6ZVD7 989 aa26.14■■□□□ 1.78
CLN3-232ENST00000568443 RMDN3Q96TC7 470 aa26.14■■□□□ 1.78
CLN3-232ENST00000568443 PPP1R12CQ9BZL4 782 aa26.14■■□□□ 1.78
CLN3-232ENST00000568443 GPHNQ9NQX3 736 aaPredicted RBP26.14■■□□□ 1.78
CLN3-232ENST00000568443 ZBTB5O15062 677 aa26.13■■□□□ 1.77
CLN3-232ENST00000568443 CFBP00751 764 aa26.13■■□□□ 1.77
CLN3-232ENST00000568443 MYL3P08590 195 aa26.13■■□□□ 1.77
CLN3-232ENST00000568443 PPIGQ13427 754 aaKnown RBP eCLIP26.13■■□□□ 1.778e-7■■□□□ 13.6
CLN3-232ENST00000568443 TTLL4Q14679 1199 aa26.13■■□□□ 1.77
CLN3-232ENST00000568443 GRM4Q14833 912 aa26.13■■□□□ 1.77
CLN3-232ENST00000568443 TMEM67Q5HYA8 995 aa26.13■■□□□ 1.77
CLN3-232ENST00000568443 TMEM199Q8N511 208 aa26.13■■□□□ 1.77
CLN3-232ENST00000568443 MTMR8Q96EF0 704 aa26.13■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms