RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 GPATCH4Q5T3I0 446 aaKnown RBP19.79■□□□□ 0.76
CLN3-231ENST00000568422 B4GALNT3Q6L9W6 998 aa19.79■□□□□ 0.76
CLN3-231ENST00000568422 PSRC1Q6PGN9 363 aaPredicted RBP19.79■□□□□ 0.76
CLN3-231ENST00000568422 PLEKHM2Q8IWE5 1019 aa19.79■□□□□ 0.76
CLN3-231ENST00000568422 CSF2RAP15509 400 aa19.78■□□□□ 0.76
CLN3-231ENST00000568422 DNAJB2P25686 324 aa19.78■□□□□ 0.76
CLN3-231ENST00000568422 TMEM240Q5SV17 173 aa19.78■□□□□ 0.76
CLN3-231ENST00000568422 RASIP1Q5U651 963 aa19.78■□□□□ 0.76
CLN3-231ENST00000568422 RNF207Q6ZRF8 634 aa19.78■□□□□ 0.76
CLN3-231ENST00000568422 C16orf59Q7L2K0 433 aa19.78■□□□□ 0.76
CLN3-231ENST00000568422 IQCA1Q86XH1 822 aa19.78■□□□□ 0.76
CLN3-231ENST00000568422 TBC1D10CQ8IV04 446 aa19.78■□□□□ 0.76
CLN3-231ENST00000568422 DNERQ8NFT8 737 aa19.78■□□□□ 0.76
CLN3-231ENST00000568422 MAFAQ8NHW3 353 aaPredicted RBP19.78■□□□□ 0.76
CLN3-231ENST00000568422 CLEC4DQ8WXI8 215 aa19.78■□□□□ 0.76
CLN3-231ENST00000568422 MYLIPQ8WY64 445 aa19.78■□□□□ 0.76
CLN3-231ENST00000568422 PURBQ96QR8 312 aaKnown RBP19.78■□□□□ 0.76
CLN3-231ENST00000568422 MAF1Q9H063 256 aa19.78■□□□□ 0.76
CLN3-231ENST00000568422 DDX49Q9Y6V7 483 aaKnown RBP19.78■□□□□ 0.76
CLN3-231ENST00000568422 CUL9Q8IWT3 2517 aa19.78■□□□□ 0.76
CLN3-231ENST00000568422 RBM47A0AV96 593 aaKnown RBP19.77■□□□□ 0.76
CLN3-231ENST00000568422 B4DLN1 442 aa19.77■□□□□ 0.76
CLN3-231ENST00000568422 CPT1AP50416 773 aa19.77■□□□□ 0.76
CLN3-231ENST00000568422 MRPL12P52815 198 aaKnown RBP19.77■□□□□ 0.76
CLN3-231ENST00000568422 RGS22Q8NE09 1264 aa19.77■□□□□ 0.76
CLN3-231ENST00000568422 WDR11Q9BZH6 1224 aa19.77■□□□□ 0.76
CLN3-231ENST00000568422 PPP1R12CQ9BZL4 782 aa19.77■□□□□ 0.76
CLN3-231ENST00000568422 MTIF3Q9H2K0 278 aaKnown RBP19.77■□□□□ 0.76
CLN3-231ENST00000568422 HIPK3Q9H422 1215 aa19.77■□□□□ 0.76
CLN3-231ENST00000568422 IL23AQ9NPF7 189 aa19.77■□□□□ 0.76
CLN3-231ENST00000568422 DIAPH3Q9NSV4 1193 aa19.77■□□□□ 0.76
CLN3-231ENST00000568422 NKRFO15226 690 aaKnown RBP eCLIP19.76■□□□□ 0.75
CLN3-231ENST00000568422 FOSL2P15408 326 aa19.76■□□□□ 0.75
CLN3-231ENST00000568422 CALML3P27482 149 aa19.76■□□□□ 0.75
CLN3-231ENST00000568422 CWC27Q6UX04 472 aaKnown RBP19.76■□□□□ 0.75
CLN3-231ENST00000568422 POLR3EQ9NVU0 708 aa19.76■□□□□ 0.75
CLN3-231ENST00000568422 MYH6P13533 1939 aa19.76■□□□□ 0.75
CLN3-231ENST00000568422 GRIN2DO15399 1336 aa19.76■□□□□ 0.75
CLN3-231ENST00000568422 NEDD4P46934 1319 aa19.76■□□□□ 0.75
CLN3-231ENST00000568422 IGHDP01880 384 aa19.75■□□□□ 0.75
CLN3-231ENST00000568422 CYP2C18P33260 490 aa19.75■□□□□ 0.75
CLN3-231ENST00000568422 RPS6P62753 249 aaKnown RBP19.75■□□□□ 0.75
CLN3-231ENST00000568422 PDE4DQ08499 809 aa19.75■□□□□ 0.75
CLN3-231ENST00000568422 BRDTQ58F21 947 aaPredicted RBP19.75■□□□□ 0.75
CLN3-231ENST00000568422 SLC30A10Q6XR72 485 aa19.75■□□□□ 0.75
CLN3-231ENST00000568422 ZNF365Q70YC5 407 aa19.75■□□□□ 0.75
CLN3-231ENST00000568422 ANKS1AQ92625 1134 aa19.75■□□□□ 0.75
CLN3-231ENST00000568422 TIFAQ96CG3 184 aa19.75■□□□□ 0.75
CLN3-231ENST00000568422 ZNF576Q9H609 170 aa19.75■□□□□ 0.75
CLN3-231ENST00000568422 CTNNA3Q9UI47 895 aa19.75■□□□□ 0.75
CLN3-231ENST00000568422 RAD50Q92878 1312 aa19.75■□□□□ 0.75
CLN3-231ENST00000568422 SUPT20HL2P0C7V6 817 aa19.74■□□□□ 0.75
CLN3-231ENST00000568422 EDNRBP24530 442 aa19.74■□□□□ 0.75
CLN3-231ENST00000568422 TMEM63BQ5T3F8 832 aa19.74■□□□□ 0.75
CLN3-231ENST00000568422 PNMA1Q8ND90 353 aa19.74■□□□□ 0.75
CLN3-231ENST00000568422 SCFD2Q8WU76 684 aa19.74■□□□□ 0.75
CLN3-231ENST00000568422 HERVK_113Q902F9 699 aa19.74■□□□□ 0.75
CLN3-231ENST00000568422 ZKSCAN3Q9BRR0 538 aa19.74■□□□□ 0.75
CLN3-231ENST00000568422 DSCC1Q9BVC3 393 aa19.74■□□□□ 0.75
CLN3-231ENST00000568422 PRUNE2Q8WUY3 3088 aa19.73■□□□□ 0.75
CLN3-231ENST00000568422 B4GALT4O60513 344 aa19.73■□□□□ 0.75
CLN3-231ENST00000568422 KPNA6O60684 536 aa19.73■□□□□ 0.75
CLN3-231ENST00000568422 KDM4AO75164 1064 aa19.73■□□□□ 0.75
CLN3-231ENST00000568422 FGBP02675 491 aa19.73■□□□□ 0.75
CLN3-231ENST00000568422 ACRP10323 421 aa19.73■□□□□ 0.75
CLN3-231ENST00000568422 PTGS1P23219 599 aa19.73■□□□□ 0.75
CLN3-231ENST00000568422 PURAQ00577 322 aaKnown RBP19.73■□□□□ 0.75
CLN3-231ENST00000568422 PPP2R5BQ15173 497 aa19.73■□□□□ 0.75
CLN3-231ENST00000568422 IMMTQ16891 758 aaKnown RBP19.73■□□□□ 0.75
CLN3-231ENST00000568422 RPUSD2Q8IZ73 545 aaKnown RBP19.73■□□□□ 0.75
CLN3-231ENST00000568422 NOC4LQ9BVI4 516 aaKnown RBP19.73■□□□□ 0.75
CLN3-231ENST00000568422 TRPV6Q9H1D0 765 aa19.73■□□□□ 0.75
CLN3-231ENST00000568422 ALDH8A1Q9H2A2 487 aaPredicted RBP19.73■□□□□ 0.75
CLN3-231ENST00000568422 KAT14Q9H8E8 782 aa19.73■□□□□ 0.75
CLN3-231ENST00000568422 GPHNQ9NQX3 736 aaPredicted RBP19.73■□□□□ 0.75
CLN3-231ENST00000568422 GOLGA8HP0CJ92 632 aa19.72■□□□□ 0.75
CLN3-231ENST00000568422 PSMC6P62333 389 aa19.72■□□□□ 0.75
CLN3-231ENST00000568422 GRIN2CQ14957 1233 aa19.72■□□□□ 0.75
CLN3-231ENST00000568422 ASPRV1Q53RT3 343 aa19.72■□□□□ 0.75
CLN3-231ENST00000568422 OR6J1Q8NGC5 347 aa19.72■□□□□ 0.75
CLN3-231ENST00000568422 ZSCAN10Q96SZ4 725 aaPredicted RBP19.72■□□□□ 0.75
CLN3-231ENST00000568422 MTG1Q9BT17 334 aaPredicted RBP19.72■□□□□ 0.75
CLN3-231ENST00000568422 COL25A1Q9BXS0 654 aaPredicted RBP19.72■□□□□ 0.75
CLN3-231ENST00000568422 KRT23Q9C075 422 aa19.72■□□□□ 0.75
CLN3-231ENST00000568422 CNNM2Q9H8M5 875 aa19.72■□□□□ 0.75
CLN3-231ENST00000568422 SCN10AQ9Y5Y9 1956 aa19.72■□□□□ 0.75
CLN3-231ENST00000568422 B4E1Z4 1266 aa19.71■□□□□ 0.75
CLN3-231ENST00000568422 RAB30Q15771 203 aa19.71■□□□□ 0.75
CLN3-231ENST00000568422 USH1GQ495M9 461 aa19.71■□□□□ 0.75
CLN3-231ENST00000568422 PBX4Q9BYU1 374 aa19.71■□□□□ 0.75
CLN3-231ENST00000568422 ZSWIM5Q9P217 1185 aa19.71■□□□□ 0.75
CLN3-231ENST00000568422 ABCB11O95342 1321 aa19.71■□□□□ 0.75
CLN3-231ENST00000568422 GBF1Q92538 1859 aa19.71■□□□□ 0.75
CLN3-231ENST00000568422 KIAA1217Q5T5P2 1943 aa19.7■□□□□ 0.74
CLN3-231ENST00000568422 A6NJR5 290 aa19.7■□□□□ 0.74
CLN3-231ENST00000568422 MYL3P08590 195 aa19.7■□□□□ 0.74
CLN3-231ENST00000568422 TTLL4Q14679 1199 aa19.7■□□□□ 0.74
CLN3-231ENST00000568422 CDC37Q16543 378 aaPredicted RBP19.7■□□□□ 0.74
CLN3-231ENST00000568422 MCF2L2Q86YR7 1114 aa19.7■□□□□ 0.74
CLN3-231ENST00000568422 ENAHQ8N8S7 591 aaPredicted RBP19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms