RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 SEC24BO95487 1268 aa13.33□□□□□ -0.28
CLN3-226ENST00000567160 TDO2P48775 406 aa13.33□□□□□ -0.28
CLN3-226ENST00000567160 LEXMQ3ZCV2 418 aa13.33□□□□□ -0.28
CLN3-226ENST00000567160 FAM83BQ5T0W9 1011 aa13.33□□□□□ -0.28
CLN3-226ENST00000567160 DEFB128Q7Z7B8 93 aa13.33□□□□□ -0.28
CLN3-226ENST00000567160 TLK2Q86UE8 772 aa13.33□□□□□ -0.28
CLN3-226ENST00000567160 HERC6Q8IVU3 1022 aa13.33□□□□□ -0.28
CLN3-226ENST00000567160 AMOTL1Q8IY63 956 aa13.33□□□□□ -0.28
CLN3-226ENST00000567160 LSG1Q9H089 658 aaKnown RBP13.33□□□□□ -0.28
CLN3-226ENST00000567160 UBE2ZQ9H832 354 aaPredicted RBP13.33□□□□□ -0.28
CLN3-226ENST00000567160 KANSL2Q9H9L4 492 aa13.33□□□□□ -0.28
CLN3-226ENST00000567160 EPB41L4AQ9HCS5 686 aaPredicted RBP13.33□□□□□ -0.28
CLN3-226ENST00000567160 ATP8A2Q9NTI2 1148 aa13.33□□□□□ -0.28
CLN3-226ENST00000567160 SCN5AQ14524 2016 aa13.32□□□□□ -0.28
CLN3-226ENST00000567160 ATP2A1O14983 1001 aa13.32□□□□□ -0.28
CLN3-226ENST00000567160 FOXP2O15409 715 aa13.32□□□□□ -0.28
CLN3-226ENST00000567160 DCXO43602 365 aa13.32□□□□□ -0.28
CLN3-226ENST00000567160 ZBED4O75132 1171 aa13.32□□□□□ -0.28
CLN3-226ENST00000567160 REC8O95072 547 aa13.32□□□□□ -0.28
CLN3-226ENST00000567160 EEF2P13639 858 aaKnown RBP13.32□□□□□ -0.28
CLN3-226ENST00000567160 SLC4A3P48751 1232 aa13.32□□□□□ -0.28
CLN3-226ENST00000567160 PUS10Q3MIT2 529 aaKnown RBP13.32□□□□□ -0.28
CLN3-226ENST00000567160 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.32□□□□□ -0.28
CLN3-226ENST00000567160 CCDC144CPQ8IYA2 1237 aa13.32□□□□□ -0.28
CLN3-226ENST00000567160 IFNL3Q8IZI9 196 aa13.32□□□□□ -0.28
CLN3-226ENST00000567160 DDRGK1Q96HY6 314 aa13.32□□□□□ -0.28
CLN3-226ENST00000567160 NACAP1Q9BZK3 213 aa13.32□□□□□ -0.28
CLN3-226ENST00000567160 NAPBQ9H115 298 aa13.32□□□□□ -0.28
CLN3-226ENST00000567160 ALDH8A1Q9H2A2 487 aaPredicted RBP13.32□□□□□ -0.28
CLN3-226ENST00000567160 DCP1AQ9NPI6 582 aaPredicted RBP13.32□□□□□ -0.28
CLN3-226ENST00000567160 WDFY4Q6ZS81 3184 aa13.31□□□□□ -0.28
CLN3-226ENST00000567160 PRPF38AQ8NAV1 312 aaKnown RBP13.31□□□□□ -0.28
CLN3-226ENST00000567160 CHST13Q8NET6 341 aa13.31□□□□□ -0.28
CLN3-226ENST00000567160 VWCEQ96DN2 955 aa13.31□□□□□ -0.28
CLN3-226ENST00000567160 DSCC1Q9BVC3 393 aa13.31□□□□□ -0.28
CLN3-226ENST00000567160 BACH2Q9BYV9 841 aa13.31□□□□□ -0.28
CLN3-226ENST00000567160 GNEQ9Y223 722 aaKnown RBP13.31□□□□□ -0.28
CLN3-226ENST00000567160 RIPK3Q9Y572 518 aa13.31□□□□□ -0.28
CLN3-226ENST00000567160 GRIN2DO15399 1336 aa13.31□□□□□ -0.28
CLN3-226ENST00000567160 ZNF318Q5VUA4 2279 aa13.3□□□□□ -0.28
CLN3-226ENST00000567160 CYP2D7A0A087X1C5 515 aa13.3□□□□□ -0.28
CLN3-226ENST00000567160 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.3□□□□□ -0.28
CLN3-226ENST00000567160 ASB14A6NK59 587 aa13.3□□□□□ -0.28
CLN3-226ENST00000567160 MINDY4BA8MYZ0 360 aa13.3□□□□□ -0.28
CLN3-226ENST00000567160 ST18O60284 1047 aa13.3□□□□□ -0.28
CLN3-226ENST00000567160 LPXNO60711 386 aa13.3□□□□□ -0.28
CLN3-226ENST00000567160 BAIAP3O94812 1187 aa13.3□□□□□ -0.28
CLN3-226ENST00000567160 CYP2D6P10635 497 aa13.3□□□□□ -0.28
CLN3-226ENST00000567160 KCNA5P22460 613 aa13.3□□□□□ -0.28
CLN3-226ENST00000567160 KCNJ6P48051 423 aa13.3□□□□□ -0.28
CLN3-226ENST00000567160 FOXK2Q01167 660 aa13.3□□□□□ -0.28
CLN3-226ENST00000567160 EVX2Q03828 476 aa13.3□□□□□ -0.28
CLN3-226ENST00000567160 PTCRAQ6ISU1 281 aaPredicted RBP13.3□□□□□ -0.28
CLN3-226ENST00000567160 CPXCR1Q8N123 301 aa13.3□□□□□ -0.28
CLN3-226ENST00000567160 RETREG2Q8NC44 543 aa13.3□□□□□ -0.28
CLN3-226ENST00000567160 GDPD5Q8WTR4 605 aa13.3□□□□□ -0.28
CLN3-226ENST00000567160 DYNLL2Q96FJ2 89 aa13.3□□□□□ -0.28
CLN3-226ENST00000567160 MFSD14AQ96MC6 490 aa13.3□□□□□ -0.28
CLN3-226ENST00000567160 FTOQ9C0B1 505 aaKnown RBP eCLIP13.3□□□□□ -0.28
CLN3-226ENST00000567160 KATNBL1Q9H079 304 aa13.3□□□□□ -0.28
CLN3-226ENST00000567160 FAM50BQ9Y247 325 aa13.3□□□□□ -0.28
CLN3-226ENST00000567160 Q9Y3F1 56 aa13.3□□□□□ -0.28
CLN3-226ENST00000567160 RBM8AQ9Y5S9 174 aaKnown RBP13.3□□□□□ -0.28
CLN3-226ENST00000567160 ASTN1O14525 1302 aa13.3□□□□□ -0.28
CLN3-226ENST00000567160 TNKSO95271 1327 aa13.3□□□□□ -0.28
CLN3-226ENST00000567160 TANC1Q9C0D5 1861 aa13.29□□□□□ -0.28
CLN3-226ENST00000567160 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.29□□□□□ -0.28
CLN3-226ENST00000567160 USP17L12C9JPN9 530 aa13.29□□□□□ -0.28
CLN3-226ENST00000567160 USP17L21D6R901 530 aa13.29□□□□□ -0.28
CLN3-226ENST00000567160 DYNC1LI2O43237 492 aaPredicted RBP13.29□□□□□ -0.28
CLN3-226ENST00000567160 FGAP02671 866 aa13.29□□□□□ -0.28
CLN3-226ENST00000567160 CDK8P49336 464 aa13.29□□□□□ -0.28
CLN3-226ENST00000567160 HAND2P61296 217 aa13.29□□□□□ -0.28
CLN3-226ENST00000567160 PSMC6P62333 389 aa13.29□□□□□ -0.28
CLN3-226ENST00000567160 ALX1Q15699 326 aa13.29□□□□□ -0.28
CLN3-226ENST00000567160 GIMAP6Q6P9H5 292 aa13.29□□□□□ -0.28
CLN3-226ENST00000567160 CTR9Q6PD62 1173 aa13.29□□□□□ -0.28
CLN3-226ENST00000567160 STK11IPQ8N1F8 1099 aa13.29□□□□□ -0.28
CLN3-226ENST00000567160 MAP4K1Q92918 833 aa13.29□□□□□ -0.28
CLN3-226ENST00000567160 FGD4Q96M96 766 aa13.29□□□□□ -0.28
CLN3-226ENST00000567160 U3KPZ7 1027 aaPredicted RBP13.29□□□□□ -0.28
CLN3-226ENST00000567160 PITPNM1O00562 1244 aa13.28□□□□□ -0.28
CLN3-226ENST00000567160 EIF5BO60841 1220 aaKnown RBP13.28□□□□□ -0.28
CLN3-226ENST00000567160 ARHGEF15O94989 841 aa13.28□□□□□ -0.28
CLN3-226ENST00000567160 CYP2C9P11712 490 aa13.28□□□□□ -0.28
CLN3-226ENST00000567160 IL9P15248 144 aa13.28□□□□□ -0.28
CLN3-226ENST00000567160 OAZ1P54368 228 aa13.28□□□□□ -0.28
CLN3-226ENST00000567160 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.28□□□□□ -0.28
CLN3-226ENST00000567160 ZBED2Q9BTP6 218 aa13.28□□□□□ -0.28
CLN3-226ENST00000567160 USP26Q9BXU7 913 aa13.28□□□□□ -0.28
CLN3-226ENST00000567160 TRMT13Q9NUP7 481 aaKnown RBP13.28□□□□□ -0.28
CLN3-226ENST00000567160 POLR3EQ9NVU0 708 aa13.28□□□□□ -0.28
CLN3-226ENST00000567160 ARPP21Q9UBL0 812 aaPredicted RBP13.28□□□□□ -0.28
CLN3-226ENST00000567160 CTNNA3Q9UI47 895 aa13.28□□□□□ -0.28
CLN3-226ENST00000567160 POTEB3A0JP26 581 aa13.27□□□□□ -0.29
CLN3-226ENST00000567160 GRXCR2A6NFK2 248 aa13.27□□□□□ -0.29
CLN3-226ENST00000567160 CTDSPL2Q05D32 466 aa13.27□□□□□ -0.29
CLN3-226ENST00000567160 SBK1Q52WX2 424 aa13.27□□□□□ -0.29
CLN3-226ENST00000567160 IQSEC1Q6DN90 963 aa13.27□□□□□ -0.29
CLN3-226ENST00000567160 POTEBQ6S5H4 581 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms