RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 ANKRD35Q8N283 1001 aa11.45□□□□□ -0.58
CLN3-220ENST00000566040 SYTL5Q8TDW5 730 aaPredicted RBP11.45□□□□□ -0.58
CLN3-220ENST00000566040 SLC12A7Q9Y666 1083 aa11.45□□□□□ -0.58
CLN3-220ENST00000566040 SCN10AQ9Y5Y9 1956 aa11.45□□□□□ -0.58
CLN3-220ENST00000566040 PNMA6FA0A0J9YX94 578 aa11.44□□□□□ -0.58
CLN3-220ENST00000566040 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.44□□□□□ -0.58
CLN3-220ENST00000566040 GOLGA8BA8MQT2 603 aa11.44□□□□□ -0.58
CLN3-220ENST00000566040 POTEB2H3BUK9 544 aa11.44□□□□□ -0.58
CLN3-220ENST00000566040 ZBTB43O43298 467 aa11.44□□□□□ -0.58
CLN3-220ENST00000566040 HMGB1P09429 215 aaKnown RBP11.44□□□□□ -0.58
CLN3-220ENST00000566040 COL6A1P12109 1028 aa11.44□□□□□ -0.58
CLN3-220ENST00000566040 PDIA3P30101 505 aaKnown RBP11.44□□□□□ -0.58
CLN3-220ENST00000566040 ALDH5A1P51649 535 aaPredicted RBP11.44□□□□□ -0.58
CLN3-220ENST00000566040 ANAPC15P60006 121 aa11.44□□□□□ -0.58
CLN3-220ENST00000566040 PKN1Q16512 942 aa11.44□□□□□ -0.58
CLN3-220ENST00000566040 ANO1Q5XXA6 986 aa11.44□□□□□ -0.58
CLN3-220ENST00000566040 TAPT1Q6NXT6 567 aa11.44□□□□□ -0.58
CLN3-220ENST00000566040 NFXL1Q6ZNB6 911 aa11.44□□□□□ -0.58
CLN3-220ENST00000566040 TMTC2Q8N394 836 aa11.44□□□□□ -0.58
CLN3-220ENST00000566040 RGS22Q8NE09 1264 aa11.44□□□□□ -0.58
CLN3-220ENST00000566040 IL31RAQ8NI17 732 aa11.44□□□□□ -0.58
CLN3-220ENST00000566040 PIBF1Q8WXW3 757 aa11.44□□□□□ -0.58
CLN3-220ENST00000566040 AMNQ9BXJ7 453 aa11.44□□□□□ -0.58
CLN3-220ENST00000566040 ALDH8A1Q9H2A2 487 aaPredicted RBP11.44□□□□□ -0.58
CLN3-220ENST00000566040 NCOA5Q9HCD5 579 aaKnown RBP11.44□□□□□ -0.58
CLN3-220ENST00000566040 CWC22Q9HCG8 908 aaKnown RBP11.44□□□□□ -0.58
CLN3-220ENST00000566040 HMX1Q9NP08 348 aaPredicted RBP11.44□□□□□ -0.58
CLN3-220ENST00000566040 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.44□□□□□ -0.58
CLN3-220ENST00000566040 BIN2Q9UBW5 565 aaPredicted RBP11.44□□□□□ -0.58
CLN3-220ENST00000566040 MYADML2A6NDP7 307 aa11.43□□□□□ -0.58
CLN3-220ENST00000566040 GOLGA8AA7E2F4 631 aa11.43□□□□□ -0.58
CLN3-220ENST00000566040 MEIS2O14770 477 aa11.43□□□□□ -0.58
CLN3-220ENST00000566040 SEPT4O43236 478 aa11.43□□□□□ -0.58
CLN3-220ENST00000566040 ADAMTS4O75173 837 aa11.43□□□□□ -0.58
CLN3-220ENST00000566040 RTN1Q16799 776 aa11.43□□□□□ -0.58
CLN3-220ENST00000566040 MFSD14CQ5VZR4 134 aa11.43□□□□□ -0.58
CLN3-220ENST00000566040 WWC2Q6AWC2 1192 aa11.43□□□□□ -0.58
CLN3-220ENST00000566040 MSL3Q8N5Y2 521 aaKnown RBP11.43□□□□□ -0.58
CLN3-220ENST00000566040 CTCFLQ8NI51 663 aaPredicted RBP11.43□□□□□ -0.58
CLN3-220ENST00000566040 GPKOWQ92917 476 aaPredicted RBP eCLIP11.43□□□□□ -0.58
CLN3-220ENST00000566040 DDX11Q96FC9 970 aa11.43□□□□□ -0.58
CLN3-220ENST00000566040 TAAR1Q96RJ0 339 aa11.43□□□□□ -0.58
CLN3-220ENST00000566040 PDGFCQ9NRA1 345 aa11.43□□□□□ -0.58
CLN3-220ENST00000566040 PCDH10Q9P2E7 1040 aa11.43□□□□□ -0.58
CLN3-220ENST00000566040 DDX20Q9UHI6 824 aaKnown RBP11.43□□□□□ -0.58
CLN3-220ENST00000566040 TPCN1Q9ULQ1 816 aa11.43□□□□□ -0.58
CLN3-220ENST00000566040 RGS20O76081 388 aa11.42□□□□□ -0.58
CLN3-220ENST00000566040 CALM1P0DP23 149 aa11.42□□□□□ -0.58
CLN3-220ENST00000566040 CALM2P0DP24 149 aa11.42□□□□□ -0.58
CLN3-220ENST00000566040 CALM3P0DP25 149 aa11.42□□□□□ -0.58
CLN3-220ENST00000566040 CALML3P27482 149 aa11.42□□□□□ -0.58
CLN3-220ENST00000566040 KIF5BP33176 963 aa11.42□□□□□ -0.58
CLN3-220ENST00000566040 AK2P54819 239 aa11.42□□□□□ -0.58
CLN3-220ENST00000566040 GJC2Q5T442 439 aaPredicted RBP11.42□□□□□ -0.58
CLN3-220ENST00000566040 CCSAPQ6IQ19 270 aaPredicted RBP11.42□□□□□ -0.58
CLN3-220ENST00000566040 RNF207Q6ZRF8 634 aa11.42□□□□□ -0.58
CLN3-220ENST00000566040 FBXO16Q8IX29 292 aaPredicted RBP11.42□□□□□ -0.58
CLN3-220ENST00000566040 CCDC82Q8N4S0 544 aa11.42□□□□□ -0.58
CLN3-220ENST00000566040 NRBP1Q9UHY1 535 aa11.42□□□□□ -0.58
CLN3-220ENST00000566040 CTDP1Q9Y5B0 961 aaPredicted RBP11.42□□□□□ -0.58
CLN3-220ENST00000566040 PCDHA1Q9Y5I3 950 aa11.42□□□□□ -0.58
CLN3-220ENST00000566040 SYNRGQ9UMZ2 1314 aa11.41□□□□□ -0.58
CLN3-220ENST00000566040 RBM47A0AV96 593 aaKnown RBP11.41□□□□□ -0.58
CLN3-220ENST00000566040 PTPDC1A2A3K4 754 aa11.41□□□□□ -0.58
CLN3-220ENST00000566040 STXBP3O00186 592 aa11.41□□□□□ -0.58
CLN3-220ENST00000566040 DHX16O60231 1041 aaKnown RBP11.41□□□□□ -0.58
CLN3-220ENST00000566040 PPFIA3O75145 1194 aa11.41□□□□□ -0.58
CLN3-220ENST00000566040 ARIH2O95376 493 aa11.41□□□□□ -0.58
CLN3-220ENST00000566040 CTDNEP1O95476 244 aa11.41□□□□□ -0.58
CLN3-220ENST00000566040 PSMA5P28066 241 aa11.41□□□□□ -0.58
CLN3-220ENST00000566040 HOXA13P31271 388 aaPredicted RBP11.41□□□□□ -0.58
CLN3-220ENST00000566040 RBM25P49756 843 aaKnown RBP11.41□□□□□ -0.58
CLN3-220ENST00000566040 NKX3-2P78367 333 aa11.41□□□□□ -0.58
CLN3-220ENST00000566040 ACVR2BQ13705 512 aa11.41□□□□□ -0.58
CLN3-220ENST00000566040 NPY5RQ15761 445 aa11.41□□□□□ -0.58
CLN3-220ENST00000566040 CCDC144BQ3MJ40 725 aa11.41□□□□□ -0.58
CLN3-220ENST00000566040 LZTS2Q9BRK4 669 aa11.41□□□□□ -0.58
CLN3-220ENST00000566040 TMEM106CQ9BVX2 250 aa11.41□□□□□ -0.58
CLN3-220ENST00000566040 MAF1Q9H063 256 aa11.41□□□□□ -0.58
CLN3-220ENST00000566040 UPF3AQ9H1J1 476 aaKnown RBP11.41□□□□□ -0.58
CLN3-220ENST00000566040 GNEQ9Y223 722 aaKnown RBP11.41□□□□□ -0.58
CLN3-220ENST00000566040 CYP46A1Q9Y6A2 500 aa11.41□□□□□ -0.58
CLN3-220ENST00000566040 EDIL3O43854 480 aa11.4□□□□□ -0.58
CLN3-220ENST00000566040 FARP2O94887 1054 aaPredicted RBP11.4□□□□□ -0.58
CLN3-220ENST00000566040 CD2BP2O95400 341 aaKnown RBP11.4□□□□□ -0.58
CLN3-220ENST00000566040 ADCYAP1R1P41586 468 aa11.4□□□□□ -0.58
CLN3-220ENST00000566040 METAP2P50579 478 aaKnown RBP eCLIP11.4□□□□□ -0.58
CLN3-220ENST00000566040 SCRN1Q12765 414 aa11.4□□□□□ -0.58
CLN3-220ENST00000566040 USP17L6PQ6QN14 398 aa11.4□□□□□ -0.58
CLN3-220ENST00000566040 KLHDC9Q8NEP7 349 aa11.4□□□□□ -0.58
CLN3-220ENST00000566040 PHKBQ93100 1093 aa11.4□□□□□ -0.58
CLN3-220ENST00000566040 ABHD16BQ9H3Z7 469 aa11.4□□□□□ -0.58
CLN3-220ENST00000566040 PXMP2Q9NR77 195 aa11.4□□□□□ -0.58
CLN3-220ENST00000566040 PDRG1Q9NUG6 133 aa11.4□□□□□ -0.58
CLN3-220ENST00000566040 RBM28Q9NW13 759 aaKnown RBP11.4□□□□□ -0.58
CLN3-220ENST00000566040 SLC5A4Q9NY91 659 aa11.4□□□□□ -0.58
CLN3-220ENST00000566040 PNMA2Q9UL42 364 aa11.4□□□□□ -0.58
CLN3-220ENST00000566040 MRPL11Q9Y3B7 192 aaKnown RBP11.4□□□□□ -0.58
CLN3-220ENST00000566040 SIP14410 1827 aa11.39□□□□□ -0.59
CLN3-220ENST00000566040 TRIP12Q14669 1992 aaPredicted RBP11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms