RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 PWP2Q15269 919 aaKnown RBP24.18■■□□□ 1.46
CLN3-219ENST00000565778 QRICH1Q2TAL8 776 aa24.18■■□□□ 1.46
CLN3-219ENST00000565778 CHST3Q7LGC8 479 aa24.18■■□□□ 1.46
CLN3-219ENST00000565778 TLK2Q86UE8 772 aa24.18■■□□□ 1.46
CLN3-219ENST00000565778 FBXO11Q86XK2 927 aa24.18■■□□□ 1.46
CLN3-219ENST00000565778 RGS22Q8NE09 1264 aa24.18■■□□□ 1.46
CLN3-219ENST00000565778 BADQ92934 168 aa24.18■■□□□ 1.46
CLN3-219ENST00000565778 TRIM43Q96BQ3 446 aaPredicted RBP24.18■■□□□ 1.46
CLN3-219ENST00000565778 LRCH3Q96II8 777 aa24.18■■□□□ 1.46
CLN3-219ENST00000565778 JMJD4Q9H9V9 463 aa24.18■■□□□ 1.46
CLN3-219ENST00000565778 MCM3APO60318 1980 aa24.18■■□□□ 1.46
CLN3-219ENST00000565778 ABCB11O95342 1321 aa24.17■■□□□ 1.46
CLN3-219ENST00000565778 B4DLN1 442 aa24.17■■□□□ 1.46
CLN3-219ENST00000565778 MRPL12P52815 198 aaKnown RBP24.17■■□□□ 1.46
CLN3-219ENST00000565778 PDE4DQ08499 809 aa24.17■■□□□ 1.46
CLN3-219ENST00000565778 DNERQ8NFT8 737 aa24.17■■□□□ 1.46
CLN3-219ENST00000565778 TMEM39AQ9NV64 488 aa24.17■■□□□ 1.46
CLN3-219ENST00000565778 CTAGE5O15320 804 aa24.16■■□□□ 1.46
CLN3-219ENST00000565778 ZEB2O60315 1214 aa24.16■■□□□ 1.46
CLN3-219ENST00000565778 NKX3-2P78367 333 aa24.16■■□□□ 1.46
CLN3-219ENST00000565778 WTAPQ15007 396 aa24.16■■□□□ 1.46
CLN3-219ENST00000565778 LRIT3Q3SXY7 679 aa24.16■■□□□ 1.46
CLN3-219ENST00000565778 TMEM63BQ5T3F8 832 aa24.16■■□□□ 1.46
CLN3-219ENST00000565778 TBC1D5Q92609 795 aa24.16■■□□□ 1.46
CLN3-219ENST00000565778 TOX2Q96NM4 488 aa24.16■■□□□ 1.46
CLN3-219ENST00000565778 MAD2L2Q9UI95 211 aa24.16■■□□□ 1.46
CLN3-219ENST00000565778 MRPL11Q9Y3B7 192 aaKnown RBP24.16■■□□□ 1.46
CLN3-219ENST00000565778 Q9Y3F1 56 aa24.16■■□□□ 1.46
CLN3-219ENST00000565778 PTGS1P23219 599 aa24.15■■□□□ 1.46
CLN3-219ENST00000565778 FAAP100Q0VG06 881 aa24.15■■□□□ 1.46
CLN3-219ENST00000565778 FSCN1Q16658 493 aaKnown RBP24.15■■□□□ 1.46
CLN3-219ENST00000565778 STOX1Q6ZVD7 989 aa24.15■■□□□ 1.46
CLN3-219ENST00000565778 ANKRD33Q7Z3H0 272 aa24.15■■□□□ 1.46
CLN3-219ENST00000565778 SKAP1Q86WV1 359 aa24.15■■□□□ 1.46
CLN3-219ENST00000565778 MCF2L2Q86YR7 1114 aa24.15■■□□□ 1.46
CLN3-219ENST00000565778 ESYT1Q9BSJ8 1104 aa24.15■■□□□ 1.46
CLN3-219ENST00000565778 WDR11Q9BZH6 1224 aa24.15■■□□□ 1.46
CLN3-219ENST00000565778 PALM3A6NDB9 673 aaPredicted RBP24.14■■□□□ 1.45
CLN3-219ENST00000565778 RAG1P15918 1043 aa24.14■■□□□ 1.45
CLN3-219ENST00000565778 TMEM67Q5HYA8 995 aa24.14■■□□□ 1.45
CLN3-219ENST00000565778 MAF1Q9H063 256 aa24.14■■□□□ 1.45
CLN3-219ENST00000565778 SENP2Q9HC62 589 aa24.14■■□□□ 1.45
CLN3-219ENST00000565778 A0A0U1RQG5 324 aaPredicted RBP24.13■■□□□ 1.45
CLN3-219ENST00000565778 ARVCFO00192 962 aa24.13■■□□□ 1.45
CLN3-219ENST00000565778 CDK7P50613 346 aa24.13■■□□□ 1.45
CLN3-219ENST00000565778 DUSP28Q4G0W2 176 aa24.13■■□□□ 1.45
CLN3-219ENST00000565778 CXCL17Q6UXB2 119 aa24.13■■□□□ 1.45
CLN3-219ENST00000565778 AMNQ9BXJ7 453 aa24.13■■□□□ 1.45
CLN3-219ENST00000565778 LSG1Q9H089 658 aaKnown RBP24.13■■□□□ 1.45
CLN3-219ENST00000565778 MROH7Q68CQ1 1323 aa24.12■■□□□ 1.45
CLN3-219ENST00000565778 KIAA0355O15063 1070 aa24.12■■□□□ 1.45
CLN3-219ENST00000565778 CABYRO75952 493 aa24.12■■□□□ 1.45
CLN3-219ENST00000565778 GRM4Q14833 912 aa24.12■■□□□ 1.45
CLN3-219ENST00000565778 BMP2KLQ5H9B9 411 aa24.12■■□□□ 1.45
CLN3-219ENST00000565778 CATIPQ7Z7H3 387 aa24.12■■□□□ 1.45
CLN3-219ENST00000565778 IGDCC4Q8TDY8 1250 aa24.12■■□□□ 1.45
CLN3-219ENST00000565778 TAAR1Q96RJ0 339 aa24.12■■□□□ 1.45
CLN3-219ENST00000565778 RBM47A0AV96 593 aaKnown RBP24.11■■□□□ 1.45
CLN3-219ENST00000565778 ZBTB5O15062 677 aa24.11■■□□□ 1.45
CLN3-219ENST00000565778 EDNRBP24530 442 aa24.11■■□□□ 1.45
CLN3-219ENST00000565778 ITGB8P26012 769 aa24.11■■□□□ 1.45
CLN3-219ENST00000565778 CASC1Q6TDU7 716 aa24.11■■□□□ 1.45
CLN3-219ENST00000565778 MB21D2Q8IYB1 491 aaPredicted RBP24.11■■□□□ 1.45
CLN3-219ENST00000565778 SYTL5Q8TDW5 730 aaPredicted RBP24.11■■□□□ 1.45
CLN3-219ENST00000565778 NSUN6Q8TEA1 469 aaKnown RBP24.11■■□□□ 1.45
CLN3-219ENST00000565778 ANO2Q9NQ90 1003 aa24.11■■□□□ 1.45
CLN3-219ENST00000565778 TLR3O15455 904 aaKnown RBP24.1■■□□□ 1.45
CLN3-219ENST00000565778 CFBP00751 764 aa24.1■■□□□ 1.45
CLN3-219ENST00000565778 ANTXR2P58335 489 aa24.1■■□□□ 1.45
CLN3-219ENST00000565778 SHHQ15465 462 aa24.1■■□□□ 1.45
CLN3-219ENST00000565778 HOMER1Q86YM7 354 aa24.1■■□□□ 1.45
CLN3-219ENST00000565778 MTMR8Q96EF0 704 aa24.1■■□□□ 1.45
CLN3-219ENST00000565778 PCDHA1Q9Y5I3 950 aa24.1■■□□□ 1.45
CLN3-219ENST00000565778 SLC27A2O14975 620 aa24.09■■□□□ 1.45
CLN3-219ENST00000565778 TROAPQ12815 778 aa24.09■■□□□ 1.45
CLN3-219ENST00000565778 ITGA7Q13683 1181 aa24.09■■□□□ 1.45
CLN3-219ENST00000565778 OR6J1Q8NGC5 347 aa24.09■■□□□ 1.45
CLN3-219ENST00000565778 SCFD2Q8WU76 684 aa24.09■■□□□ 1.45
CLN3-219ENST00000565778 RMDN3Q96TC7 470 aa24.09■■□□□ 1.45
CLN3-219ENST00000565778 NKRFO15226 690 aaKnown RBP eCLIP24.08■■□□□ 1.45
CLN3-219ENST00000565778 PRC1O43663 620 aa24.08■■□□□ 1.45
CLN3-219ENST00000565778 TXNP10599 105 aaKnown RBP24.08■■□□□ 1.45
CLN3-219ENST00000565778 MCM5P33992 734 aa24.08■■□□□ 1.45
CLN3-219ENST00000565778 TRAF1Q13077 416 aa24.08■■□□□ 1.45
CLN3-219ENST00000565778 PPP2R5BQ15173 497 aa24.08■■□□□ 1.45
CLN3-219ENST00000565778 ARHGEF16Q5VV41 709 aa24.08■■□□□ 1.45
CLN3-219ENST00000565778 CREB3L3Q68CJ9 461 aa24.08■■□□□ 1.45
CLN3-219ENST00000565778 GPR153Q6NV75 609 aa24.08■■□□□ 1.45
CLN3-219ENST00000565778 CCDC136Q96JN2 1154 aa24.08■■□□□ 1.45
CLN3-219ENST00000565778 PIGSQ96S52 555 aa24.08■■□□□ 1.45
CLN3-219ENST00000565778 IWS1Q96ST2 819 aa24.08■■□□□ 1.45
CLN3-219ENST00000565778 RIOX1Q9H6W3 641 aa24.08■■□□□ 1.45
CLN3-219ENST00000565778 COL20A1Q9P218 1284 aa24.08■■□□□ 1.45
CLN3-219ENST00000565778 PPP1R11O60927 126 aaPredicted RBP24.07■■□□□ 1.44
CLN3-219ENST00000565778 TIMP1P01033 207 aa24.07■■□□□ 1.44
CLN3-219ENST00000565778 CPT1AP50416 773 aa24.07■■□□□ 1.44
CLN3-219ENST00000565778 NECTIN1Q15223 517 aa24.07■■□□□ 1.44
CLN3-219ENST00000565778 STXBP2Q15833 593 aa24.07■■□□□ 1.44
CLN3-219ENST00000565778 BRDTQ58F21 947 aaPredicted RBP24.07■■□□□ 1.44
CLN3-219ENST00000565778 C9orf50Q5SZB4 431 aa24.07■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms