RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 DDX49Q9Y6V7 483 aaKnown RBP21.97■■□□□ 1.11
CLN3-218ENST00000565688 CD4P01730 458 aa21.96■■□□□ 1.11
CLN3-218ENST00000565688 ITGA7Q13683 1181 aa21.96■■□□□ 1.11
CLN3-218ENST00000565688 DUSP28Q4G0W2 176 aa21.96■■□□□ 1.11
CLN3-218ENST00000565688 RNF207Q6ZRF8 634 aa21.96■■□□□ 1.11
CLN3-218ENST00000565688 CDX2Q99626 313 aaPredicted RBP21.96■■□□□ 1.11
CLN3-218ENST00000565688 DSCC1Q9BVC3 393 aa21.96■■□□□ 1.11
CLN3-218ENST00000565688 CTNNA3Q9UI47 895 aa21.96■■□□□ 1.11
CLN3-218ENST00000565688 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.95■■□□□ 1.1
CLN3-218ENST00000565688 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.95■■□□□ 1.1
CLN3-218ENST00000565688 CALML3P27482 149 aa21.95■■□□□ 1.1
CLN3-218ENST00000565688 IMMTQ16891 758 aaKnown RBP21.95■■□□□ 1.1
CLN3-218ENST00000565688 ZKSCAN3Q9BRR0 538 aa21.95■■□□□ 1.1
CLN3-218ENST00000565688 WDR11Q9BZH6 1224 aa21.95■■□□□ 1.1
CLN3-218ENST00000565688 LCTP09848 1927 aa21.95■■□□□ 1.1
CLN3-218ENST00000565688 UNC80Q8N2C7 3258 aa21.95■■□□□ 1.1
CLN3-218ENST00000565688 LAMA4Q16363 1823 aa21.94■■□□□ 1.1
CLN3-218ENST00000565688 B4DLN1 442 aa21.94■■□□□ 1.1
CLN3-218ENST00000565688 KDM4AO75164 1064 aa21.94■■□□□ 1.1
CLN3-218ENST00000565688 MRPL12P52815 198 aaKnown RBP21.94■■□□□ 1.1
CLN3-218ENST00000565688 RPS6P62753 249 aaKnown RBP21.94■■□□□ 1.1
CLN3-218ENST00000565688 SLC30A10Q6XR72 485 aa21.94■■□□□ 1.1
CLN3-218ENST00000565688 PNMA1Q8ND90 353 aa21.94■■□□□ 1.1
CLN3-218ENST00000565688 RGS22Q8NE09 1264 aa21.94■■□□□ 1.1
CLN3-218ENST00000565688 DNERQ8NFT8 737 aa21.94■■□□□ 1.1
CLN3-218ENST00000565688 ANKS1AQ92625 1134 aa21.94■■□□□ 1.1
CLN3-218ENST00000565688 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.94■■□□□ 1.13e-6■□□□□ 10.1
CLN3-218ENST00000565688 MAF1Q9H063 256 aa21.94■■□□□ 1.1
CLN3-218ENST00000565688 TTYH1Q9H313 450 aaPredicted RBP21.94■■□□□ 1.1
CLN3-218ENST00000565688 KAT14Q9H8E8 782 aa21.94■■□□□ 1.1
CLN3-218ENST00000565688 RBM47A0AV96 593 aaKnown RBP21.93■■□□□ 1.1
CLN3-218ENST00000565688 CSF2RAP15509 400 aa21.93■■□□□ 1.1
CLN3-218ENST00000565688 PDE4DQ08499 809 aa21.93■■□□□ 1.1
CLN3-218ENST00000565688 PSRC1Q6PGN9 363 aaPredicted RBP21.93■■□□□ 1.1
CLN3-218ENST00000565688 ZSCAN10Q96SZ4 725 aaPredicted RBP21.93■■□□□ 1.1
CLN3-218ENST00000565688 PPP1R12CQ9BZL4 782 aa21.93■■□□□ 1.1
CLN3-218ENST00000565688 POLR3EQ9NVU0 708 aa21.93■■□□□ 1.1
CLN3-218ENST00000565688 GRIN2DO15399 1336 aa21.92■■□□□ 1.1
CLN3-218ENST00000565688 GOLGA8HP0CJ92 632 aa21.92■■□□□ 1.1
CLN3-218ENST00000565688 CPT1AP50416 773 aa21.92■■□□□ 1.1
CLN3-218ENST00000565688 ASPRV1Q53RT3 343 aa21.92■■□□□ 1.1
CLN3-218ENST00000565688 TMEM240Q5SV17 173 aa21.92■■□□□ 1.1
CLN3-218ENST00000565688 TMEM63BQ5T3F8 832 aa21.92■■□□□ 1.1
CLN3-218ENST00000565688 KRT23Q9C075 422 aa21.92■■□□□ 1.1
CLN3-218ENST00000565688 HIPK3Q9H422 1215 aa21.92■■□□□ 1.1
CLN3-218ENST00000565688 CNNM2Q9H8M5 875 aa21.92■■□□□ 1.1
CLN3-218ENST00000565688 B4E1Z4 1266 aa21.91■■□□□ 1.1
CLN3-218ENST00000565688 NKRFO15226 690 aaKnown RBP eCLIP21.91■■□□□ 1.1
CLN3-218ENST00000565688 PTGS1P23219 599 aa21.91■■□□□ 1.1
CLN3-218ENST00000565688 EDNRBP24530 442 aa21.91■■□□□ 1.1
CLN3-218ENST00000565688 CYP2C18P33260 490 aa21.91■■□□□ 1.1
CLN3-218ENST00000565688 BRDTQ58F21 947 aaPredicted RBP21.91■■□□□ 1.1
CLN3-218ENST00000565688 C16orf59Q7L2K0 433 aa21.91■■□□□ 1.1
CLN3-218ENST00000565688 SCFD2Q8WU76 684 aa21.91■■□□□ 1.1
CLN3-218ENST00000565688 UBA5Q9GZZ9 404 aa21.91■■□□□ 1.1
CLN3-218ENST00000565688 ZSWIM5Q9P217 1185 aa21.91■■□□□ 1.1
CLN3-218ENST00000565688 RAD50Q92878 1312 aa21.9■■□□□ 1.1
CLN3-218ENST00000565688 DNAJB2P25686 324 aa21.9■■□□□ 1.1
CLN3-218ENST00000565688 PPP2R5BQ15173 497 aa21.9■■□□□ 1.1
CLN3-218ENST00000565688 USH1GQ495M9 461 aa21.9■■□□□ 1.1
CLN3-218ENST00000565688 RASIP1Q5U651 963 aa21.9■■□□□ 1.1
CLN3-218ENST00000565688 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.9■■□□□ 1.1
CLN3-218ENST00000565688 ENAHQ8N8S7 591 aaPredicted RBP21.9■■□□□ 1.1
CLN3-218ENST00000565688 IL23AQ9NPF7 189 aa21.9■■□□□ 1.1
CLN3-218ENST00000565688 TNKSO95271 1327 aa21.89■■□□□ 1.1
CLN3-218ENST00000565688 ABCB11O95342 1321 aa21.89■■□□□ 1.1
CLN3-218ENST00000565688 B4GALT4O60513 344 aa21.89■■□□□ 1.09
CLN3-218ENST00000565688 PSMC6P62333 389 aa21.89■■□□□ 1.09
CLN3-218ENST00000565688 CDC37Q16543 378 aaPredicted RBP21.89■■□□□ 1.09
CLN3-218ENST00000565688 ZNF365Q70YC5 407 aa21.89■■□□□ 1.09
CLN3-218ENST00000565688 OR6J1Q8NGC5 347 aa21.89■■□□□ 1.09
CLN3-218ENST00000565688 MAFAQ8NHW3 353 aaPredicted RBP21.89■■□□□ 1.09
CLN3-218ENST00000565688 MYLIPQ8WY64 445 aa21.89■■□□□ 1.09
CLN3-218ENST00000565688 UBAC1Q9BSL1 405 aa21.89■■□□□ 1.09
CLN3-218ENST00000565688 TRPV6Q9H1D0 765 aa21.89■■□□□ 1.09
CLN3-218ENST00000565688 MTIF3Q9H2K0 278 aaKnown RBP21.89■■□□□ 1.09
CLN3-218ENST00000565688 GPHNQ9NQX3 736 aaPredicted RBP21.89■■□□□ 1.09
CLN3-218ENST00000565688 KPNA6O60684 536 aa21.88■■□□□ 1.09
CLN3-218ENST00000565688 PARP1P09874 1014 aaKnown RBP21.88■■□□□ 1.09
CLN3-218ENST00000565688 PURAQ00577 322 aaKnown RBP21.88■■□□□ 1.09
CLN3-218ENST00000565688 MCF2L2Q86YR7 1114 aa21.88■■□□□ 1.09
CLN3-218ENST00000565688 ADGRF4Q8IZF3 695 aa21.88■■□□□ 1.09
CLN3-218ENST00000565688 NOC4LQ9BVI4 516 aaKnown RBP21.88■■□□□ 1.09
CLN3-218ENST00000565688 ALDH8A1Q9H2A2 487 aaPredicted RBP21.88■■□□□ 1.09
CLN3-218ENST00000565688 CPVLQ9H3G5 476 aa21.88■■□□□ 1.09
CLN3-218ENST00000565688 EYSQ5T1H1 3165 aa21.87■■□□□ 1.09
CLN3-218ENST00000565688 CDH23Q9H251 3354 aa21.87■■□□□ 1.09
CLN3-218ENST00000565688 SUPT20HL2P0C7V6 817 aa21.87■■□□□ 1.09
CLN3-218ENST00000565688 ACRP10323 421 aa21.87■■□□□ 1.09
CLN3-218ENST00000565688 FOSL2P15408 326 aa21.87■■□□□ 1.09
CLN3-218ENST00000565688 HERVK_113Q902F9 699 aa21.87■■□□□ 1.09
CLN3-218ENST00000565688 TIFAQ96CG3 184 aa21.87■■□□□ 1.09
CLN3-218ENST00000565688 MTG1Q9BT17 334 aaPredicted RBP21.87■■□□□ 1.09
CLN3-218ENST00000565688 FGBP02675 491 aa21.86■■□□□ 1.09
CLN3-218ENST00000565688 MYL3P08590 195 aa21.86■■□□□ 1.09
CLN3-218ENST00000565688 TXNP10599 105 aaKnown RBP21.86■■□□□ 1.09
CLN3-218ENST00000565688 TTLL4Q14679 1199 aa21.86■■□□□ 1.09
CLN3-218ENST00000565688 IFIT1BQ5T764 474 aaKnown RBP21.86■■□□□ 1.09
CLN3-218ENST00000565688 MRPL11Q9Y3B7 192 aaKnown RBP21.86■■□□□ 1.09
CLN3-218ENST00000565688 A6NJR5 290 aa21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms