RNA–Protein interactions for RNA: ENST00000565559.5

CAPN3-215, Transcript of calpain 3, human

TSL 3

Gene CAPN3, Length 711 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN3-215	ENST00000565559	TNNI3K	Q59H18	835 aa		13.4	□□□□□ -0.26
CAPN3-215	ENST00000565559	FAM83B	Q5T0W9	1011 aa		13.4	□□□□□ -0.26
CAPN3-215	ENST00000565559	ADHFE1	Q8IWW8	467 aa		13.4	□□□□□ -0.26
CAPN3-215	ENST00000565559	NEK9	Q8TD19	979 aa		13.4	□□□□□ -0.26
CAPN3-215	ENST00000565559	CCDC17	Q96LX7	622 aa		13.4	□□□□□ -0.26
CAPN3-215	ENST00000565559	CRBN	Q96SW2	442 aa		13.4	□□□□□ -0.26
CAPN3-215	ENST00000565559	API5	Q9BZZ5	524 aa	Known RBP	13.4	□□□□□ -0.26
CAPN3-215	ENST00000565559	GPR108	Q9NPR9	543 aa		13.4	□□□□□ -0.26
CAPN3-215	ENST00000565559	CTNNA3	Q9UI47	895 aa		13.4	□□□□□ -0.26
CAPN3-215	ENST00000565559	GNE	Q9Y223	722 aa	Known RBP	13.4	□□□□□ -0.26
CAPN3-215	ENST00000565559	FPGT-TNNI3K	V9GXZ4	949 aa		13.4	□□□□□ -0.26
CAPN3-215	ENST00000565559	COL4A4	P53420	1690 aa	Predicted RBP	13.4	□□□□□ -0.26
CAPN3-215	ENST00000565559	ASTN1	O14525	1302 aa		13.39	□□□□□ -0.27
CAPN3-215	ENST00000565559	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	13.39	□□□□□ -0.27
CAPN3-215	ENST00000565559	MAGEB6P1	A0A0J9YX57	407 aa		13.39	□□□□□ -0.27
CAPN3-215	ENST00000565559	LCHN	A4D1U4	455 aa		13.39	□□□□□ -0.27
CAPN3-215	ENST00000565559	ZBED4	O75132	1171 aa		13.39	□□□□□ -0.27
CAPN3-215	ENST00000565559	EEF2	P13639	858 aa	Known RBP	13.39	□□□□□ -0.27
CAPN3-215	ENST00000565559	ERVK-21	P61565	698 aa		13.39	□□□□□ -0.27
CAPN3-215	ENST00000565559	BFSP2	Q13515	415 aa		13.39	□□□□□ -0.27
CAPN3-215	ENST00000565559	PTPRO	Q16827	1216 aa		13.39	□□□□□ -0.27
CAPN3-215	ENST00000565559	EP400NL	Q6ZTU2	488 aa		13.39	□□□□□ -0.27
CAPN3-215	ENST00000565559	SUGP1	Q8IWZ8	645 aa	Known RBP	13.39	□□□□□ -0.27
CAPN3-215	ENST00000565559	CPXCR1	Q8N123	301 aa		13.39	□□□□□ -0.27
CAPN3-215	ENST00000565559	ZNF454	Q8N9F8	522 aa		13.39	□□□□□ -0.27
CAPN3-215	ENST00000565559	POP1	Q99575	1024 aa	Known RBP	13.39	□□□□□ -0.27
CAPN3-215	ENST00000565559	KATNBL1	Q9H079	304 aa		13.39	□□□□□ -0.27
CAPN3-215	ENST00000565559	IRF2BPL	Q9H1B7	796 aa		13.39	□□□□□ -0.27
CAPN3-215	ENST00000565559	KANSL2	Q9H9L4	492 aa		13.39	□□□□□ -0.27
CAPN3-215	ENST00000565559		Q9Y3F1	56 aa		13.39	□□□□□ -0.27
CAPN3-215	ENST00000565559	RIPK3	Q9Y572	518 aa		13.39	□□□□□ -0.27
CAPN3-215	ENST00000565559	ASB14	A6NK59	587 aa		13.38	□□□□□ -0.27
CAPN3-215	ENST00000565559	ATP2A1	O14983	1001 aa		13.38	□□□□□ -0.27
CAPN3-215	ENST00000565559	IQCF3	P0C7M6	154 aa		13.38	□□□□□ -0.27
CAPN3-215	ENST00000565559	OS9	Q13438	667 aa	Predicted RBP	13.38	□□□□□ -0.27
CAPN3-215	ENST00000565559	TIGD5	Q53EQ6	642 aa		13.38	□□□□□ -0.27
CAPN3-215	ENST00000565559	FAM47C	Q5HY64	1035 aa		13.38	□□□□□ -0.27
CAPN3-215	ENST00000565559	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	13.38	□□□□□ -0.27
CAPN3-215	ENST00000565559	ERMP1	Q7Z2K6	904 aa		13.38	□□□□□ -0.27
CAPN3-215	ENST00000565559	CHST13	Q8NET6	341 aa		13.38	□□□□□ -0.27
CAPN3-215	ENST00000565559	DDX12P	Q92771	950 aa		13.38	□□□□□ -0.27
CAPN3-215	ENST00000565559	FGD4	Q96M96	766 aa		13.38	□□□□□ -0.27
CAPN3-215	ENST00000565559	RAD9A	Q99638	391 aa		13.38	□□□□□ -0.27
CAPN3-215	ENST00000565559	RIOK1	Q9BRS2	568 aa	Known RBP	13.38	□□□□□ -0.27
CAPN3-215	ENST00000565559	POLR3E	Q9NVU0	708 aa		13.38	□□□□□ -0.27
CAPN3-215	ENST00000565559	USP34	Q70CQ2	3546 aa		13.38	□□□□□ -0.27
CAPN3-215	ENST00000565559	CFAP54	Q96N23	3096 aa		13.38	□□□□□ -0.27
CAPN3-215	ENST00000565559	COL11A1	P12107	1806 aa	Predicted RBP	13.37	□□□□□ -0.27
CAPN3-215	ENST00000565559	SMPD1	P17405	629 aa		13.37	□□□□□ -0.27
CAPN3-215	ENST00000565559	IRS1	P35568	1242 aa		13.37	□□□□□ -0.27
CAPN3-215	ENST00000565559	RARS	P54136	660 aa	Known RBP	13.37	□□□□□ -0.27
CAPN3-215	ENST00000565559	HERC4	Q5GLZ8	1057 aa	Predicted RBP	13.37	□□□□□ -0.27
CAPN3-215	ENST00000565559	BMP8A	Q7Z5Y6	402 aa		13.37	□□□□□ -0.27
CAPN3-215	ENST00000565559	PRPF38A	Q8NAV1	312 aa	Known RBP	13.37	□□□□□ -0.27
CAPN3-215	ENST00000565559	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	13.37	□□□□□ -0.27
CAPN3-215	ENST00000565559	PBXIP1	Q96AQ6	731 aa		13.37	□□□□□ -0.27
CAPN3-215	ENST00000565559	MUTYH	Q9UIF7	546 aa		13.37	□□□□□ -0.27
CAPN3-215	ENST00000565559	NOD1	Q9Y239	953 aa		13.37	□□□□□ -0.27
CAPN3-215	ENST00000565559	SPTBN4	Q9H254	2564 aa		13.36	□□□□□ -0.27
CAPN3-215	ENST00000565559	WDR5	P61964	334 aa	Known RBP	13.36	□□□□□ -0.27
CAPN3-215	ENST00000565559	LRRFIP1	Q32MZ4	808 aa	Known RBP	13.36	□□□□□ -0.27
CAPN3-215	ENST00000565559	IQSEC1	Q6DN90	963 aa		13.36	□□□□□ -0.27
CAPN3-215	ENST00000565559	AMOTL1	Q8IY63	956 aa		13.36	□□□□□ -0.27
CAPN3-215	ENST00000565559	ZNF687	Q8N1G0	1237 aa		13.36	□□□□□ -0.27
CAPN3-215	ENST00000565559	CCDC155	Q8N6L0	562 aa		13.36	□□□□□ -0.27
CAPN3-215	ENST00000565559	PABPC5	Q96DU9	382 aa	Known RBP	13.36	□□□□□ -0.27
CAPN3-215	ENST00000565559	MRPL38	Q96DV4	380 aa	Known RBP	13.36	□□□□□ -0.27
CAPN3-215	ENST00000565559	DYNLL2	Q96FJ2	89 aa		13.36	□□□□□ -0.27
CAPN3-215	ENST00000565559	PARP14	Q460N5	1801 aa		13.36	□□□□□ -0.27
CAPN3-215	ENST00000565559	LINC01553	A4QN01	128 aa		13.35	□□□□□ -0.27
CAPN3-215	ENST00000565559	USP17L12	C9JPN9	530 aa		13.35	□□□□□ -0.27
CAPN3-215	ENST00000565559	USP17L21	D6R901	530 aa		13.35	□□□□□ -0.27
CAPN3-215	ENST00000565559	GJB5	O95377	273 aa		13.35	□□□□□ -0.27
CAPN3-215	ENST00000565559	CYP2D6	P10635	497 aa		13.35	□□□□□ -0.27
CAPN3-215	ENST00000565559	CPT1A	P50416	773 aa		13.35	□□□□□ -0.27
CAPN3-215	ENST00000565559	TCF15	Q12870	199 aa		13.35	□□□□□ -0.27
CAPN3-215	ENST00000565559	TMCO2	Q7Z6W1	182 aa	Predicted RBP	13.35	□□□□□ -0.27
CAPN3-215	ENST00000565559	EDA	Q92838	391 aa		13.35	□□□□□ -0.27
CAPN3-215	ENST00000565559	ATOH1	Q92858	354 aa	Predicted RBP	13.35	□□□□□ -0.27
CAPN3-215	ENST00000565559	RAVER2	Q9HCJ3	691 aa	Known RBP	13.35	□□□□□ -0.27
CAPN3-215	ENST00000565559	DCP1A	Q9NPI6	582 aa	Predicted RBP	13.35	□□□□□ -0.27
CAPN3-215	ENST00000565559	NOB1	Q9ULX3	412 aa	Known RBP	13.35	□□□□□ -0.27
CAPN3-215	ENST00000565559	GNAI2	P04899	355 aa		13.34	□□□□□ -0.27
CAPN3-215	ENST00000565559	MYL3	P08590	195 aa		13.34	□□□□□ -0.27
CAPN3-215	ENST00000565559	FOSB	P53539	338 aa		13.34	□□□□□ -0.27
CAPN3-215	ENST00000565559	OAZ1	P54368	228 aa		13.34	□□□□□ -0.27
CAPN3-215	ENST00000565559	CNTN2	Q02246	1040 aa		13.34	□□□□□ -0.27
CAPN3-215	ENST00000565559	BRDT	Q58F21	947 aa	Predicted RBP	13.34	□□□□□ -0.27
CAPN3-215	ENST00000565559	SDR42E1	Q8WUS8	393 aa		13.34	□□□□□ -0.27
CAPN3-215	ENST00000565559	KIFC2	Q96AC6	838 aa		13.34	□□□□□ -0.27
CAPN3-215	ENST00000565559	NUP88	Q99567	741 aa	Predicted RBP	13.34	□□□□□ -0.27
CAPN3-215	ENST00000565559	MTG1	Q9BT17	334 aa	Predicted RBP	13.34	□□□□□ -0.27
CAPN3-215	ENST00000565559	ACAD9	Q9H845	621 aa		13.34	□□□□□ -0.27
CAPN3-215	ENST00000565559	HOMER2	Q9NSB8	354 aa		13.34	□□□□□ -0.27
CAPN3-215	ENST00000565559	FAM86C1	Q9NVL1	165 aa		13.34	□□□□□ -0.27
CAPN3-215	ENST00000565559	COG6	Q9Y2V7	657 aa		13.34	□□□□□ -0.27
CAPN3-215	ENST00000565559	NAV1	Q8NEY1	1877 aa		13.33	□□□□□ -0.27
CAPN3-215	ENST00000565559	PTPRZ1	P23471	2315 aa	Predicted RBP	13.33	□□□□□ -0.28
CAPN3-215	ENST00000565559	TMEM221	A6NGB7	291 aa		13.33	□□□□□ -0.28
CAPN3-215	ENST00000565559		M0R296	226 aa		13.33	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 26 ms