RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 DHX16O60231 1041 aaKnown RBP26.26■■□□□ 1.79
CLN3-215ENST00000565236 PTH1RQ03431 593 aa26.26■■□□□ 1.79
CLN3-215ENST00000565236 FSCN1Q16658 493 aaKnown RBP26.26■■□□□ 1.79
CLN3-215ENST00000565236 MPHOSPH6Q99547 160 aaKnown RBP26.26■■□□□ 1.79
CLN3-215ENST00000565236 LCTP09848 1927 aa26.26■■□□□ 1.79
CLN3-215ENST00000565236 ZEB2O60315 1214 aa26.25■■□□□ 1.79
CLN3-215ENST00000565236 ITGB8P26012 769 aa26.25■■□□□ 1.79
CLN3-215ENST00000565236 CDK7P50613 346 aa26.25■■□□□ 1.79
CLN3-215ENST00000565236 SHHQ15465 462 aa26.25■■□□□ 1.79
CLN3-215ENST00000565236 CDC37Q16543 378 aaPredicted RBP26.25■■□□□ 1.79
CLN3-215ENST00000565236 DEFB123Q8N688 67 aa26.25■■□□□ 1.79
CLN3-215ENST00000565236 RGS22Q8NE09 1264 aa26.25■■□□□ 1.79
CLN3-215ENST00000565236 VAT1LQ9HCJ6 419 aa26.25■■□□□ 1.79
CLN3-215ENST00000565236 Q9Y3F1 56 aa26.25■■□□□ 1.79
CLN3-215ENST00000565236 LAMA2P24043 3122 aaKnown RBP26.24■■□□□ 1.79
CLN3-215ENST00000565236 B4DLN1 442 aa26.24■■□□□ 1.79
CLN3-215ENST00000565236 ARVCFO00192 962 aa26.24■■□□□ 1.79
CLN3-215ENST00000565236 MRPL12P52815 198 aaKnown RBP26.24■■□□□ 1.79
CLN3-215ENST00000565236 PDE4DQ08499 809 aa26.24■■□□□ 1.79
CLN3-215ENST00000565236 CYB5R4Q7L1T6 521 aa26.24■■□□□ 1.79
CLN3-215ENST00000565236 DNERQ8NFT8 737 aa26.24■■□□□ 1.79
CLN3-215ENST00000565236 ABCB11O95342 1321 aa26.23■■□□□ 1.79
CLN3-215ENST00000565236 SGSM2O43147 1006 aa26.23■■□□□ 1.79
CLN3-215ENST00000565236 CABYRO75952 493 aa26.23■■□□□ 1.79
CLN3-215ENST00000565236 CYP21A2P08686 494 aa26.23■■□□□ 1.79
CLN3-215ENST00000565236 C9orf50Q5SZB4 431 aa26.23■■□□□ 1.79
CLN3-215ENST00000565236 TMEM63BQ5T3F8 832 aa26.23■■□□□ 1.79
CLN3-215ENST00000565236 CXCL17Q6UXB2 119 aa26.23■■□□□ 1.79
CLN3-215ENST00000565236 WDR11Q9BZH6 1224 aa26.23■■□□□ 1.79
CLN3-215ENST00000565236 PTGS1P23219 599 aa26.22■■□□□ 1.79
CLN3-215ENST00000565236 SEC23AQ15436 765 aa26.22■■□□□ 1.79
CLN3-215ENST00000565236 DUSP28Q4G0W2 176 aa26.22■■□□□ 1.79
CLN3-215ENST00000565236 Q7L0L9 218 aa26.22■■□□□ 1.79
CLN3-215ENST00000565236 RALYLQ86SE5 291 aaKnown RBP26.22■■□□□ 1.79
CLN3-215ENST00000565236 MAF1Q9H063 256 aa26.22■■□□□ 1.79
CLN3-215ENST00000565236 JMJD4Q9H9V9 463 aa26.22■■□□□ 1.79
CLN3-215ENST00000565236 LRRC37A2A6NM11 1700 aa26.22■■□□□ 1.79
CLN3-215ENST00000565236 TLR3O15455 904 aaKnown RBP26.21■■□□□ 1.79
CLN3-215ENST00000565236 FPGSQ05932 587 aa26.21■■□□□ 1.79
CLN3-215ENST00000565236 QRICH1Q2TAL8 776 aa26.21■■□□□ 1.79
CLN3-215ENST00000565236 FBXO11Q86XK2 927 aa26.21■■□□□ 1.79
CLN3-215ENST00000565236 RBM47A0AV96 593 aaKnown RBP26.2■■□□□ 1.78
CLN3-215ENST00000565236 ERICH2A1L162 156 aa26.2■■□□□ 1.78
CLN3-215ENST00000565236 IFIT3O14879 490 aaKnown RBP26.2■■□□□ 1.78
CLN3-215ENST00000565236 TIMP1P01033 207 aa26.2■■□□□ 1.78
CLN3-215ENST00000565236 MCF2L2Q86YR7 1114 aa26.2■■□□□ 1.78
CLN3-215ENST00000565236 STAG2Q8N3U4 1231 aa26.2■■□□□ 1.78
CLN3-215ENST00000565236 TBX21Q9UL17 535 aa26.2■■□□□ 1.78
CLN3-215ENST00000565236 MRPL11Q9Y3B7 192 aaKnown RBP26.2■■□□□ 1.78
CLN3-215ENST00000565236 KLRF2D3W0D1 207 aa26.19■■□□□ 1.78
CLN3-215ENST00000565236 E7EWF7 191 aa26.19■■□□□ 1.78
CLN3-215ENST00000565236 EDNRBP24530 442 aa26.19■■□□□ 1.78
CLN3-215ENST00000565236 NCOA7Q8NI08 942 aa26.19■■□□□ 1.78
CLN3-215ENST00000565236 TBC1D5Q92609 795 aa26.19■■□□□ 1.78
CLN3-215ENST00000565236 MAP4K1Q92918 833 aa26.19■■□□□ 1.78
CLN3-215ENST00000565236 ITGA7Q13683 1181 aa26.18■■□□□ 1.78
CLN3-215ENST00000565236 SART3Q15020 963 aaKnown RBP26.18■■□□□ 1.78
CLN3-215ENST00000565236 FAM126BQ8IXS8 530 aa26.18■■□□□ 1.78
CLN3-215ENST00000565236 MYH6P13533 1939 aa26.18■■□□□ 1.78
CLN3-215ENST00000565236 EPHB4P54760 987 aa26.17■■□□□ 1.78
CLN3-215ENST00000565236 SLC43A3Q8NBI5 491 aa26.17■■□□□ 1.78
CLN3-215ENST00000565236 SCFD2Q8WU76 684 aa26.17■■□□□ 1.78
CLN3-215ENST00000565236 AMNQ9BXJ7 453 aa26.17■■□□□ 1.78
CLN3-215ENST00000565236 SEZ6LQ9BYH1 1024 aa26.17■■□□□ 1.78
CLN3-215ENST00000565236 MTMR10Q9NXD2 777 aa26.17■■□□□ 1.78
CLN3-215ENST00000565236 MAD2L2Q9UI95 211 aa26.17■■□□□ 1.78
CLN3-215ENST00000565236 CPT1AP50416 773 aa26.16■■□□□ 1.78
CLN3-215ENST00000565236 WTAPQ15007 396 aa26.16■■□□□ 1.78
CLN3-215ENST00000565236 PPP2R5BQ15173 497 aa26.16■■□□□ 1.78
CLN3-215ENST00000565236 FAM109BQ6ICB4 259 aaPredicted RBP26.16■■□□□ 1.78
CLN3-215ENST00000565236 MFSD5Q6N075 450 aa26.16■■□□□ 1.78
CLN3-215ENST00000565236 OR6J1Q8NGC5 347 aa26.16■■□□□ 1.78
CLN3-215ENST00000565236 SYTL5Q8TDW5 730 aaPredicted RBP26.16■■□□□ 1.78
CLN3-215ENST00000565236 NSUN6Q8TEA1 469 aaKnown RBP26.16■■□□□ 1.78
CLN3-215ENST00000565236 TAAR1Q96RJ0 339 aa26.16■■□□□ 1.78
CLN3-215ENST00000565236 POLR3EQ9NVU0 708 aa26.16■■□□□ 1.78
CLN3-215ENST00000565236 TAF6LQ9Y6J9 622 aa26.16■■□□□ 1.78
CLN3-215ENST00000565236 PALM3A6NDB9 673 aaPredicted RBP26.15■■□□□ 1.78
CLN3-215ENST00000565236 NKRFO15226 690 aaKnown RBP eCLIP26.15■■□□□ 1.78
CLN3-215ENST00000565236 CD4P01730 458 aa26.15■■□□□ 1.78
CLN3-215ENST00000565236 BRDTQ58F21 947 aaPredicted RBP26.15■■□□□ 1.78
CLN3-215ENST00000565236 CHST3Q7LGC8 479 aa26.15■■□□□ 1.78
CLN3-215ENST00000565236 RNPC3Q96LT9 517 aaKnown RBP26.15■■□□□ 1.78
CLN3-215ENST00000565236 RBM8AQ9Y5S9 174 aaKnown RBP26.15■■□□□ 1.78
CLN3-215ENST00000565236 GRIN2DO15399 1336 aa26.14■■□□□ 1.78
CLN3-215ENST00000565236 TXNP10599 105 aaKnown RBP26.14■■□□□ 1.78
CLN3-215ENST00000565236 PSMC6P62333 389 aa26.14■■□□□ 1.78
CLN3-215ENST00000565236 STOX1Q6ZVD7 989 aa26.14■■□□□ 1.78
CLN3-215ENST00000565236 RMDN3Q96TC7 470 aa26.14■■□□□ 1.78
CLN3-215ENST00000565236 PPP1R12CQ9BZL4 782 aa26.14■■□□□ 1.78
CLN3-215ENST00000565236 GPHNQ9NQX3 736 aaPredicted RBP26.14■■□□□ 1.78
CLN3-215ENST00000565236 ZBTB5O15062 677 aa26.13■■□□□ 1.77
CLN3-215ENST00000565236 CFBP00751 764 aa26.13■■□□□ 1.77
CLN3-215ENST00000565236 MYL3P08590 195 aa26.13■■□□□ 1.77
CLN3-215ENST00000565236 PPIGQ13427 754 aaKnown RBP eCLIP26.13■■□□□ 1.77
CLN3-215ENST00000565236 TTLL4Q14679 1199 aa26.13■■□□□ 1.77
CLN3-215ENST00000565236 GRM4Q14833 912 aa26.13■■□□□ 1.77
CLN3-215ENST00000565236 TMEM67Q5HYA8 995 aa26.13■■□□□ 1.77
CLN3-215ENST00000565236 TMEM199Q8N511 208 aa26.13■■□□□ 1.77
CLN3-215ENST00000565236 MTMR8Q96EF0 704 aa26.13■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms