RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CALML3P27482 149 aa19.86■□□□□ 0.77
CLN3-211ENST00000564091 DUSP28Q4G0W2 176 aa19.86■□□□□ 0.77
CLN3-211ENST00000564091 SLC30A10Q6XR72 485 aa19.86■□□□□ 0.77
CLN3-211ENST00000564091 CLEC4DQ8WXI8 215 aa19.86■□□□□ 0.77
CLN3-211ENST00000564091 HERVK_113Q902F9 699 aa19.86■□□□□ 0.77
CLN3-211ENST00000564091 WDR11Q9BZH6 1224 aa19.86■□□□□ 0.77
CLN3-211ENST00000564091 LNPKQ9C0E8 428 aa19.86■□□□□ 0.77
CLN3-211ENST00000564091 MYH4Q9Y623 1939 aa19.85■□□□□ 0.77
CLN3-211ENST00000564091 TRIM6-TRIM34B2RNG4 842 aa19.85■□□□□ 0.77
CLN3-211ENST00000564091 FGBP02675 491 aa19.85■□□□□ 0.77
CLN3-211ENST00000564091 OTOP2Q7RTS6 562 aa19.85■□□□□ 0.77
CLN3-211ENST00000564091 TBC1D10CQ8IV04 446 aa19.85■□□□□ 0.77
CLN3-211ENST00000564091 NOC4LQ9BVI4 516 aaKnown RBP19.85■□□□□ 0.77
CLN3-211ENST00000564091 AKNAD1Q5T1N1 836 aa19.84■□□□□ 0.77
CLN3-211ENST00000564091 RNF207Q6ZRF8 634 aa19.84■□□□□ 0.77
CLN3-211ENST00000564091 MFSD6Q6ZSS7 791 aa19.84■□□□□ 0.77
CLN3-211ENST00000564091 RILPL2Q969X0 211 aa19.84■□□□□ 0.77
CLN3-211ENST00000564091 WNT8AQ9H1J5 351 aa19.84■□□□□ 0.77
CLN3-211ENST00000564091 PRDM12Q9H4Q4 367 aa19.84■□□□□ 0.77
CLN3-211ENST00000564091 CCDC171Q6TFL3 1326 aa19.83■□□□□ 0.77
CLN3-211ENST00000564091 MYL3P08590 195 aa19.83■□□□□ 0.77
CLN3-211ENST00000564091 RPS6P62753 249 aaKnown RBP19.83■□□□□ 0.77
CLN3-211ENST00000564091 ZNF543Q08ER8 600 aa19.83■□□□□ 0.77
CLN3-211ENST00000564091 PPM1EQ8WY54 764 aa19.83■□□□□ 0.77
CLN3-211ENST00000564091 SCLYQ96I15 445 aa19.83■□□□□ 0.77
CLN3-211ENST00000564091 TTC14Q96N46 770 aa19.83■□□□□ 0.77
CLN3-211ENST00000564091 SEZ6LQ9BYH1 1024 aa19.83■□□□□ 0.77
CLN3-211ENST00000564091 ALDH8A1Q9H2A2 487 aaPredicted RBP19.83■□□□□ 0.77
CLN3-211ENST00000564091 PRDM6Q9NQX0 595 aa19.83■□□□□ 0.77
CLN3-211ENST00000564091 TRMT13Q9NUP7 481 aaKnown RBP19.83■□□□□ 0.77
CLN3-211ENST00000564091 MUC3AQ02505 3323 aa19.82■□□□□ 0.76
CLN3-211ENST00000564091 RBM47A0AV96 593 aaKnown RBP19.82■□□□□ 0.76
CLN3-211ENST00000564091 GOLGA8HP0CJ92 632 aa19.82■□□□□ 0.76
CLN3-211ENST00000564091 CYP2C9P11712 490 aa19.82■□□□□ 0.76
CLN3-211ENST00000564091 RAB30Q15771 203 aa19.82■□□□□ 0.76
CLN3-211ENST00000564091 B4GALNT3Q6L9W6 998 aa19.82■□□□□ 0.76
CLN3-211ENST00000564091 OR6J1Q8NGC5 347 aa19.82■□□□□ 0.76
CLN3-211ENST00000564091 PPP1R13LQ8WUF5 828 aa19.82■□□□□ 0.76
CLN3-211ENST00000564091 VWCEQ96DN2 955 aa19.82■□□□□ 0.76
CLN3-211ENST00000564091 ZKSCAN3Q9BRR0 538 aa19.82■□□□□ 0.76
CLN3-211ENST00000564091 MTIF3Q9H2K0 278 aaKnown RBP19.82■□□□□ 0.76
CLN3-211ENST00000564091 NKX2-4Q9H2Z4 354 aa19.82■□□□□ 0.76
CLN3-211ENST00000564091 CPVLQ9H3G5 476 aa19.82■□□□□ 0.76
CLN3-211ENST00000564091 MSRAQ9UJ68 235 aa19.82■□□□□ 0.76
CLN3-211ENST00000564091 ZMYM6O95789 1325 aa19.81■□□□□ 0.76
CLN3-211ENST00000564091 MCM3APO60318 1980 aa19.81■□□□□ 0.76
CLN3-211ENST00000564091 CHD9Q3L8U1 2897 aa19.81■□□□□ 0.76
CLN3-211ENST00000564091 SNHG28P0DPA3 235 aa19.81■□□□□ 0.76
CLN3-211ENST00000564091 PURAQ00577 322 aaKnown RBP19.81■□□□□ 0.76
CLN3-211ENST00000564091 PDE4DQ08499 809 aa19.81■□□□□ 0.76
CLN3-211ENST00000564091 ADGRE1Q14246 886 aa19.81■□□□□ 0.76
CLN3-211ENST00000564091 TICAM2Q86XR7 235 aa19.81■□□□□ 0.76
CLN3-211ENST00000564091 COPS5Q92905 334 aa19.81■□□□□ 0.76
CLN3-211ENST00000564091 GAS2L1Q99501 681 aaPredicted RBP19.81■□□□□ 0.76
CLN3-211ENST00000564091 UBA5Q9GZZ9 404 aa19.81■□□□□ 0.76
CLN3-211ENST00000564091 POLR3EQ9NVU0 708 aa19.81■□□□□ 0.76
CLN3-211ENST00000564091 YBX2Q9Y2T7 364 aaKnown RBP19.81■□□□□ 0.76
CLN3-211ENST00000564091 NEDD4P46934 1319 aa19.8■□□□□ 0.76
CLN3-211ENST00000564091 LOC102724159A0A0B4J2E5 919 aa19.8■□□□□ 0.76
CLN3-211ENST00000564091 SDSP20132 328 aa19.8■□□□□ 0.76
CLN3-211ENST00000564091 CPT1AP50416 773 aa19.8■□□□□ 0.76
CLN3-211ENST00000564091 RABGGTBP53611 331 aa19.8■□□□□ 0.76
CLN3-211ENST00000564091 PWP2Q15269 919 aaKnown RBP19.8■□□□□ 0.76
CLN3-211ENST00000564091 USH1GQ495M9 461 aa19.8■□□□□ 0.76
CLN3-211ENST00000564091 RPUSD2Q8IZ73 545 aaKnown RBP19.8■□□□□ 0.76
CLN3-211ENST00000564091 MTG1Q9BT17 334 aaPredicted RBP19.8■□□□□ 0.76
CLN3-211ENST00000564091 RNF41Q9H4P4 317 aaPredicted RBP19.8■□□□□ 0.76
CLN3-211ENST00000564091 TNKSO95271 1327 aa19.79■□□□□ 0.76
CLN3-211ENST00000564091 WDR19Q8NEZ3 1342 aa19.79■□□□□ 0.76
CLN3-211ENST00000564091 PCP11498 1178 aaKnown RBP19.79■□□□□ 0.76
CLN3-211ENST00000564091 EDNRBP24530 442 aa19.79■□□□□ 0.76
CLN3-211ENST00000564091 ESR2Q92731 530 aa19.79■□□□□ 0.76
CLN3-211ENST00000564091 GPHNQ9NQX3 736 aaPredicted RBP19.79■□□□□ 0.76
CLN3-211ENST00000564091 PNMA2Q9UL42 364 aa19.79■□□□□ 0.76
CLN3-211ENST00000564091 ZBBXA8MT70 800 aa19.78■□□□□ 0.76
CLN3-211ENST00000564091 ZNF213O14771 459 aa19.78■□□□□ 0.76
CLN3-211ENST00000564091 SUPT20HL2P0C7V6 817 aa19.78■□□□□ 0.76
CLN3-211ENST00000564091 MYOGP15173 224 aa19.78■□□□□ 0.76
CLN3-211ENST00000564091 PPP2R5BQ15173 497 aa19.78■□□□□ 0.76
CLN3-211ENST00000564091 NBPF20Q3BBV1 942 aa19.78■□□□□ 0.76
CLN3-211ENST00000564091 FAM47CQ5HY64 1035 aa19.78■□□□□ 0.76
CLN3-211ENST00000564091 TBC1D5Q92609 795 aa19.78■□□□□ 0.76
CLN3-211ENST00000564091 SLC28A3Q9HAS3 691 aa19.78■□□□□ 0.76
CLN3-211ENST00000564091 SLC4A7Q9Y6M7 1214 aa19.78■□□□□ 0.76
CLN3-211ENST00000564091 IGFBP4P22692 258 aa19.77■□□□□ 0.76
CLN3-211ENST00000564091 TTLL4Q14679 1199 aa19.77■□□□□ 0.76
CLN3-211ENST00000564091 CCDC85BQ15834 202 aaPredicted RBP19.77■□□□□ 0.76
CLN3-211ENST00000564091 BRDTQ58F21 947 aaPredicted RBP19.77■□□□□ 0.76
CLN3-211ENST00000564091 TJAP1Q5JTD0 557 aa19.77■□□□□ 0.76
CLN3-211ENST00000564091 GPATCH4Q5T3I0 446 aaKnown RBP19.77■□□□□ 0.76
CLN3-211ENST00000564091 CWC27Q6UX04 472 aaKnown RBP19.77■□□□□ 0.76
CLN3-211ENST00000564091 DEFB128Q7Z7B8 93 aa19.77■□□□□ 0.76
CLN3-211ENST00000564091 DGKHQ86XP1 1220 aa19.77■□□□□ 0.76
CLN3-211ENST00000564091 PLEKHM2Q8IWE5 1019 aa19.77■□□□□ 0.76
CLN3-211ENST00000564091 SMC5Q8IY18 1101 aa19.77■□□□□ 0.76
CLN3-211ENST00000564091 DNERQ8NFT8 737 aa19.77■□□□□ 0.76
CLN3-211ENST00000564091 SCFD2Q8WU76 684 aa19.77■□□□□ 0.76
CLN3-211ENST00000564091 SYMPKQ92797 1274 aaKnown RBP19.77■□□□□ 0.76
CLN3-211ENST00000564091 MPHOSPH6Q99547 160 aaKnown RBP19.77■□□□□ 0.76
CLN3-211ENST00000564091 A6NJR5 290 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms