RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 MFSD5Q6N075 450 aa20.18■□□□□ 0.82
VPS9D1-203ENST00000563798 RNF207Q6ZRF8 634 aa20.18■□□□□ 0.82
VPS9D1-203ENST00000563798 NOL8Q76FK4 1167 aaKnown RBP20.18■□□□□ 0.82
VPS9D1-203ENST00000563798 DNERQ8NFT8 737 aa20.18■□□□□ 0.82
VPS9D1-203ENST00000563798 VTI1AQ96AJ9 217 aa20.18■□□□□ 0.82
VPS9D1-203ENST00000563798 KRT23Q9C075 422 aa20.18■□□□□ 0.82
VPS9D1-203ENST00000563798 CNNM2Q9H8M5 875 aa20.18■□□□□ 0.82
VPS9D1-203ENST00000563798 PTPDC1A2A3K4 754 aa20.17■□□□□ 0.82
VPS9D1-203ENST00000563798 ZEB2O60315 1214 aa20.17■□□□□ 0.82
VPS9D1-203ENST00000563798 RPS6P62753 249 aaKnown RBP20.17■□□□□ 0.82
VPS9D1-203ENST00000563798 CXCL17Q6UXB2 119 aa20.17■□□□□ 0.82
VPS9D1-203ENST00000563798 SLC30A10Q6XR72 485 aa20.17■□□□□ 0.82
VPS9D1-203ENST00000563798 KIAA1211Q6ZU35 1233 aa20.17■□□□□ 0.82
VPS9D1-203ENST00000563798 EEPD1Q7L9B9 569 aa20.17■□□□□ 0.82
VPS9D1-203ENST00000563798 ENAHQ8N8S7 591 aaPredicted RBP20.17■□□□□ 0.82
VPS9D1-203ENST00000563798 GUCD1Q96NT3 240 aa20.17■□□□□ 0.82
VPS9D1-203ENST00000563798 IL25Q9H293 177 aa20.17■□□□□ 0.82
VPS9D1-203ENST00000563798 KAT14Q9H8E8 782 aa20.17■□□□□ 0.82
VPS9D1-203ENST00000563798 RAD50Q92878 1312 aa20.17■□□□□ 0.82
VPS9D1-203ENST00000563798 TLR3O15455 904 aaKnown RBP20.16■□□□□ 0.82
VPS9D1-203ENST00000563798 GOLGA8HP0CJ92 632 aa20.16■□□□□ 0.82
VPS9D1-203ENST00000563798 GSPT1P15170 499 aaKnown RBP20.16■□□□□ 0.82
VPS9D1-203ENST00000563798 ASPRV1Q53RT3 343 aa20.16■□□□□ 0.82
VPS9D1-203ENST00000563798 TMEM63BQ5T3F8 832 aa20.16■□□□□ 0.82
VPS9D1-203ENST00000563798 ZNF697Q5TEC3 545 aa20.16■□□□□ 0.82
VPS9D1-203ENST00000563798 SLC17A8Q8NDX2 589 aa20.16■□□□□ 0.82
VPS9D1-203ENST00000563798 GRIN2DO15399 1336 aa20.16■□□□□ 0.82
VPS9D1-203ENST00000563798 CALML3P27482 149 aa20.15■□□□□ 0.82
VPS9D1-203ENST00000563798 ITGA7Q13683 1181 aa20.15■□□□□ 0.82
VPS9D1-203ENST00000563798 RNPC3Q96LT9 517 aaKnown RBP20.15■□□□□ 0.82
VPS9D1-203ENST00000563798 MPHOSPH6Q99547 160 aaKnown RBP20.15■□□□□ 0.82
VPS9D1-203ENST00000563798 WDR11Q9BZH6 1224 aa20.15■□□□□ 0.82
VPS9D1-203ENST00000563798 UBA5Q9GZZ9 404 aa20.15■□□□□ 0.82
VPS9D1-203ENST00000563798 TNKSO95271 1327 aa20.15■□□□□ 0.82
VPS9D1-203ENST00000563798 TMEM265A0A087WTH1 108 aa20.14■□□□□ 0.81
VPS9D1-203ENST00000563798 PTGS1P23219 599 aa20.14■□□□□ 0.81
VPS9D1-203ENST00000563798 PPIGQ13427 754 aaKnown RBP eCLIP20.14■□□□□ 0.817e-7■■□□□ 12.2
VPS9D1-203ENST00000563798 CDC37Q16543 378 aaPredicted RBP20.14■□□□□ 0.81
VPS9D1-203ENST00000563798 ADGRF4Q8IZF3 695 aa20.14■□□□□ 0.81
VPS9D1-203ENST00000563798 SEMA6BQ9H3T3 888 aa20.14■□□□□ 0.81
VPS9D1-203ENST00000563798 ABCB11O95342 1321 aa20.13■□□□□ 0.81
VPS9D1-203ENST00000563798 B4DLN1 442 aa20.13■□□□□ 0.81
VPS9D1-203ENST00000563798 NKRFO15226 690 aaKnown RBP eCLIP20.13■□□□□ 0.81
VPS9D1-203ENST00000563798 MRPL12P52815 198 aaKnown RBP20.13■□□□□ 0.81
VPS9D1-203ENST00000563798 SEC23AQ15436 765 aa20.13■□□□□ 0.81
VPS9D1-203ENST00000563798 RASIP1Q5U651 963 aa20.13■□□□□ 0.81
VPS9D1-203ENST00000563798 C16orf59Q7L2K0 433 aa20.13■□□□□ 0.81
VPS9D1-203ENST00000563798 TMEM199Q8N511 208 aa20.13■□□□□ 0.81
VPS9D1-203ENST00000563798 CPVLQ9H3G5 476 aa20.13■□□□□ 0.81
VPS9D1-203ENST00000563798 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.12■□□□□ 0.81
VPS9D1-203ENST00000563798 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.12■□□□□ 0.81
VPS9D1-203ENST00000563798 PARP1P09874 1014 aaKnown RBP20.12■□□□□ 0.81
VPS9D1-203ENST00000563798 PDE4DQ08499 809 aa20.12■□□□□ 0.81
VPS9D1-203ENST00000563798 SCFD2Q8WU76 684 aa20.12■□□□□ 0.81
VPS9D1-203ENST00000563798 RUFY2Q8WXA3 655 aa20.12■□□□□ 0.81
VPS9D1-203ENST00000563798 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.12■□□□□ 0.81
VPS9D1-203ENST00000563798 UBAC1Q9BSL1 405 aa20.12■□□□□ 0.81
VPS9D1-203ENST00000563798 POLR3EQ9NVU0 708 aa20.12■□□□□ 0.81
VPS9D1-203ENST00000563798 CHMLP26374 656 aa20.11■□□□□ 0.81
VPS9D1-203ENST00000563798 CPT1AP50416 773 aa20.11■□□□□ 0.81
VPS9D1-203ENST00000563798 PURAQ00577 322 aaKnown RBP20.11■□□□□ 0.81
VPS9D1-203ENST00000563798 USH1GQ495M9 461 aa20.11■□□□□ 0.81
VPS9D1-203ENST00000563798 TMEM240Q5SV17 173 aa20.11■□□□□ 0.81
VPS9D1-203ENST00000563798 MCF2L2Q86YR7 1114 aa20.11■□□□□ 0.81
VPS9D1-203ENST00000563798 TTYH1Q9H313 450 aaPredicted RBP20.11■□□□□ 0.81
VPS9D1-203ENST00000563798 JMJD4Q9H9V9 463 aa20.11■□□□□ 0.81
VPS9D1-203ENST00000563798 A6NJR5 290 aa20.1■□□□□ 0.81
VPS9D1-203ENST00000563798 CSF2RAP15509 400 aa20.1■□□□□ 0.81
VPS9D1-203ENST00000563798 GHRHRQ02643 423 aa20.1■□□□□ 0.81
VPS9D1-203ENST00000563798 QRICH1Q2TAL8 776 aa20.1■□□□□ 0.81
VPS9D1-203ENST00000563798 IFIT1BQ5T764 474 aaKnown RBP20.1■□□□□ 0.81
VPS9D1-203ENST00000563798 SYTL5Q8TDW5 730 aaPredicted RBP20.1■□□□□ 0.81
VPS9D1-203ENST00000563798 MTMR8Q96EF0 704 aa20.1■□□□□ 0.81
VPS9D1-203ENST00000563798 CDX2Q99626 313 aaPredicted RBP20.1■□□□□ 0.81
VPS9D1-203ENST00000563798 KPNA6O60684 536 aa20.09■□□□□ 0.81
VPS9D1-203ENST00000563798 CYP21A2P08686 494 aa20.09■□□□□ 0.81
VPS9D1-203ENST00000563798 PSMC6P62333 389 aa20.09■□□□□ 0.81
VPS9D1-203ENST00000563798 PPP2R5BQ15173 497 aa20.09■□□□□ 0.81
VPS9D1-203ENST00000563798 PSRC1Q6PGN9 363 aaPredicted RBP20.09■□□□□ 0.81
VPS9D1-203ENST00000563798 CYB5R4Q7L1T6 521 aa20.09■□□□□ 0.81
VPS9D1-203ENST00000563798 FBXO11Q86XK2 927 aa20.09■□□□□ 0.81
VPS9D1-203ENST00000563798 TBC1D5Q92609 795 aa20.09■□□□□ 0.81
VPS9D1-203ENST00000563798 FAM161BQ96MY7 647 aa20.09■□□□□ 0.81
VPS9D1-203ENST00000563798 IWS1Q96ST2 819 aa20.09■□□□□ 0.81
VPS9D1-203ENST00000563798 NOC4LQ9BVI4 516 aaKnown RBP20.09■□□□□ 0.81
VPS9D1-203ENST00000563798 PPP1R12CQ9BZL4 782 aa20.09■□□□□ 0.81
VPS9D1-203ENST00000563798 ALDH8A1Q9H2A2 487 aaPredicted RBP20.09■□□□□ 0.81
VPS9D1-203ENST00000563798 HIPK3Q9H422 1215 aa20.09■□□□□ 0.81
VPS9D1-203ENST00000563798 IL23AQ9NPF7 189 aa20.09■□□□□ 0.81
VPS9D1-203ENST00000563798 MRPL11Q9Y3B7 192 aaKnown RBP20.09■□□□□ 0.81
VPS9D1-203ENST00000563798 U3KPZ7 1027 aaPredicted RBP20.09■□□□□ 0.81
VPS9D1-203ENST00000563798 B4GALT4O60513 344 aa20.08■□□□□ 0.81
VPS9D1-203ENST00000563798 CYP2C18P33260 490 aa20.08■□□□□ 0.81
VPS9D1-203ENST00000563798 BRDTQ58F21 947 aaPredicted RBP20.08■□□□□ 0.81
VPS9D1-203ENST00000563798 CCDC62Q6P9F0 684 aa20.08■□□□□ 0.81
VPS9D1-203ENST00000563798 OR6J1Q8NGC5 347 aa20.08■□□□□ 0.81
VPS9D1-203ENST00000563798 NSUN6Q8TEA1 469 aaKnown RBP20.08■□□□□ 0.81
VPS9D1-203ENST00000563798 MTG1Q9BT17 334 aaPredicted RBP20.08■□□□□ 0.81
VPS9D1-203ENST00000563798 TRPV6Q9H1D0 765 aa20.08■□□□□ 0.81
VPS9D1-203ENST00000563798 COL20A1Q9P218 1284 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms