RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 GOLGA8KD6RF30 607 aa14.8□□□□□ -0.04
CLK3-206ENST00000562078 FOXN1O15353 648 aa14.8□□□□□ -0.04
CLK3-206ENST00000562078 KCNB1Q14721 858 aa14.8□□□□□ -0.04
CLK3-206ENST00000562078 WTAPQ15007 396 aa14.8□□□□□ -0.04
CLK3-206ENST00000562078 PLCB4Q15147 1175 aa14.8□□□□□ -0.04
CLK3-206ENST00000562078 MYSM1Q5VVJ2 828 aa14.8□□□□□ -0.04
CLK3-206ENST00000562078 KCTD16Q68DU8 428 aa14.8□□□□□ -0.04
CLK3-206ENST00000562078 SND1Q7KZF4 910 aaKnown RBP eCLIP14.8□□□□□ -0.04
CLK3-206ENST00000562078 BRAPQ7Z569 592 aa14.8□□□□□ -0.04
CLK3-206ENST00000562078 CCDC114Q96M63 670 aa14.8□□□□□ -0.04
CLK3-206ENST00000562078 TRIM10Q9UDY6 481 aa14.8□□□□□ -0.04
CLK3-206ENST00000562078 HOOK1Q9UJC3 728 aaKnown RBP14.8□□□□□ -0.04
CLK3-206ENST00000562078 TTF2Q9UNY4 1162 aaKnown RBP14.8□□□□□ -0.04
CLK3-206ENST00000562078 UBE2Q2LH0YL09 131 aa14.8□□□□□ -0.04
CLK3-206ENST00000562078 PPEF1O14829 653 aaPredicted RBP14.8□□□□□ -0.04
CLK3-206ENST00000562078 SRGNP10124 158 aa14.8□□□□□ -0.04
CLK3-206ENST00000562078 NPR1P16066 1061 aa14.8□□□□□ -0.04
CLK3-206ENST00000562078 IARSP41252 1262 aaKnown RBP14.8□□□□□ -0.04
CLK3-206ENST00000562078 GUCY1A3Q02108 690 aa14.8□□□□□ -0.04
CLK3-206ENST00000562078 MECOMQ03112 1051 aa14.8□□□□□ -0.04
CLK3-206ENST00000562078 ICA1Q05084 483 aa14.8□□□□□ -0.04
CLK3-206ENST00000562078 SPRED3Q2MJR0 410 aa14.8□□□□□ -0.04
CLK3-206ENST00000562078 TRAPPC11Q7Z392 1133 aa14.8□□□□□ -0.04
CLK3-206ENST00000562078 ZNF473Q8WTR7 871 aaKnown RBP14.8□□□□□ -0.04
CLK3-206ENST00000562078 LMBR1Q8WVP7 490 aa14.8□□□□□ -0.04
CLK3-206ENST00000562078 NSUN4Q96CB9 384 aaKnown RBP14.8□□□□□ -0.04
CLK3-206ENST00000562078 NAA15Q9BXJ9 866 aaKnown RBP14.8□□□□□ -0.04
CLK3-206ENST00000562078 HAUS2Q9NVX0 235 aa14.8□□□□□ -0.04
CLK3-206ENST00000562078 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.8□□□□□ -0.04
CLK3-206ENST00000562078 CDK5RAP2Q96SN8 1893 aa14.79□□□□□ -0.04
CLK3-206ENST00000562078 ERICH2A1L162 156 aa14.79□□□□□ -0.04
CLK3-206ENST00000562078 TARSL2A2RTX5 802 aaKnown RBP14.79□□□□□ -0.04
CLK3-206ENST00000562078 PRDX5P30044 214 aa14.79□□□□□ -0.04
CLK3-206ENST00000562078 LSP1P33241 339 aa14.79□□□□□ -0.04
CLK3-206ENST00000562078 SEC24CP53992 1094 aa14.79□□□□□ -0.04
CLK3-206ENST00000562078 RWDD2BP57060 319 aa14.79□□□□□ -0.04
CLK3-206ENST00000562078 HDLBPQ00341 1268 aaKnown RBP14.79□□□□□ -0.04
CLK3-206ENST00000562078 ARMC3Q5W041 872 aa14.79□□□□□ -0.04
CLK3-206ENST00000562078 CDCA2Q69YH5 1023 aaPredicted RBP14.79□□□□□ -0.04
CLK3-206ENST00000562078 SYNE3Q6ZMZ3 975 aa14.79□□□□□ -0.04
CLK3-206ENST00000562078 PPFIBP1Q86W92 1011 aa14.79□□□□□ -0.04
CLK3-206ENST00000562078 SLC26A6Q9BXS9 759 aa14.79□□□□□ -0.04
CLK3-206ENST00000562078 LEMD3Q9Y2U8 911 aa14.79□□□□□ -0.04
CLK3-206ENST00000562078 LRRC37AA6NMS7 1700 aa14.79□□□□□ -0.04
CLK3-206ENST00000562078 OPLAHO14841 1288 aa14.78□□□□□ -0.04
CLK3-206ENST00000562078 GPSM2P81274 684 aa14.78□□□□□ -0.04
CLK3-206ENST00000562078 ANO1Q5XXA6 986 aa14.78□□□□□ -0.04
CLK3-206ENST00000562078 KRT40Q6A162 431 aa14.78□□□□□ -0.04
CLK3-206ENST00000562078 UBAC1Q9BSL1 405 aa14.78□□□□□ -0.04
CLK3-206ENST00000562078 BAZ2BQ9UIF8 2168 aaKnown RBP14.78□□□□□ -0.04
CLK3-206ENST00000562078 PDS5AQ29RF7 1337 aaKnown RBP14.78□□□□□ -0.04
CLK3-206ENST00000562078 CASP14P31944 242 aa14.78□□□□□ -0.04
CLK3-206ENST00000562078 SLC8A3P57103 927 aa14.78□□□□□ -0.04
CLK3-206ENST00000562078 SHC4Q6S5L8 630 aa14.78□□□□□ -0.04
CLK3-206ENST00000562078 SPDYE1Q8NFV5 336 aaPredicted RBP14.78□□□□□ -0.04
CLK3-206ENST00000562078 AENQ8WTP8 325 aaKnown RBP14.78□□□□□ -0.04
CLK3-206ENST00000562078 MASTLQ96GX5 879 aa14.78□□□□□ -0.04
CLK3-206ENST00000562078 MED15Q96RN5 788 aa14.78□□□□□ -0.04
CLK3-206ENST00000562078 EPN3Q9H201 632 aa14.78□□□□□ -0.04
CLK3-206ENST00000562078 ANAPC4Q9UJX5 808 aa14.78□□□□□ -0.04
CLK3-206ENST00000562078 NID2Q14112 1375 aa14.78□□□□□ -0.04
CLK3-206ENST00000562078 NAV1Q8NEY1 1877 aa14.78□□□□□ -0.04
CLK3-206ENST00000562078 UFL1O94874 794 aa14.77□□□□□ -0.04
CLK3-206ENST00000562078 SNUPNO95149 360 aaKnown RBP14.77□□□□□ -0.04
CLK3-206ENST00000562078 ALDH1B1P30837 517 aa14.77□□□□□ -0.04
CLK3-206ENST00000562078 RTN1Q16799 776 aa14.77□□□□□ -0.04
CLK3-206ENST00000562078 RCSD1Q6JBY9 416 aa14.77□□□□□ -0.04
CLK3-206ENST00000562078 C2CD5Q86YS7 1000 aa14.77□□□□□ -0.04
CLK3-206ENST00000562078 MAB21L3Q8N8X9 362 aa14.77□□□□□ -0.04
CLK3-206ENST00000562078 RNPC3Q96LT9 517 aaKnown RBP14.77□□□□□ -0.04
CLK3-206ENST00000562078 PAGR1Q9BTK6 254 aa14.77□□□□□ -0.04
CLK3-206ENST00000562078 AATFQ9NY61 560 aaKnown RBP eCLIP14.77□□□□□ -0.04
CLK3-206ENST00000562078 GUCA1BQ9UMX6 200 aa14.77□□□□□ -0.04
CLK3-206ENST00000562078 TNKSO95271 1327 aa14.77□□□□□ -0.04
CLK3-206ENST00000562078 MFAP3LO75121 409 aa14.77□□□□□ -0.05
CLK3-206ENST00000562078 ATP1A1P05023 1023 aaKnown RBP14.77□□□□□ -0.05
CLK3-206ENST00000562078 ERVK-24P63145 666 aa14.77□□□□□ -0.05
CLK3-206ENST00000562078 SSRP1Q08945 709 aaKnown RBP14.77□□□□□ -0.05
CLK3-206ENST00000562078 TMC4Q7Z404 712 aa14.77□□□□□ -0.05
CLK3-206ENST00000562078 ESR2Q92731 530 aa14.77□□□□□ -0.05
CLK3-206ENST00000562078 GPR101Q96P66 508 aaPredicted RBP14.77□□□□□ -0.05
CLK3-206ENST00000562078 GGA1Q9UJY5 639 aa14.77□□□□□ -0.05
CLK3-206ENST00000562078 FAM184BQ9ULE4 1060 aa14.77□□□□□ -0.05
CLK3-206ENST00000562078 HPSEQ9Y251 543 aa14.77□□□□□ -0.05
CLK3-206ENST00000562078 STK36Q9NRP7 1315 aa14.77□□□□□ -0.05
CLK3-206ENST00000562078 IRS2Q9Y4H2 1338 aa14.77□□□□□ -0.05
CLK3-206ENST00000562078 A0A1B0GTH6 734 aa14.76□□□□□ -0.05
CLK3-206ENST00000562078 H0YIN7 160 aa14.76□□□□□ -0.05
CLK3-206ENST00000562078 PRDM1O75626 825 aa14.76□□□□□ -0.05
CLK3-206ENST00000562078 APBA1Q02410 837 aa14.76□□□□□ -0.05
CLK3-206ENST00000562078 TRIM29Q14134 588 aa14.76□□□□□ -0.05
CLK3-206ENST00000562078 RBBP5Q15291 538 aaKnown RBP14.76□□□□□ -0.05
CLK3-206ENST00000562078 ZNF654Q8IZM8 581 aa14.76□□□□□ -0.05
CLK3-206ENST00000562078 TSEN2Q8NCE0 465 aaKnown RBP14.76□□□□□ -0.05
CLK3-206ENST00000562078 MAGEC3Q8TD91 643 aa14.76□□□□□ -0.05
CLK3-206ENST00000562078 NUP133Q8WUM0 1156 aa14.76□□□□□ -0.05
CLK3-206ENST00000562078 TBC1D31Q96DN5 1066 aa14.76□□□□□ -0.05
CLK3-206ENST00000562078 SAAL1Q96ER3 474 aa14.76□□□□□ -0.05
CLK3-206ENST00000562078 CCT8L2Q96SF2 557 aa14.76□□□□□ -0.05
CLK3-206ENST00000562078 SLF1Q9BQI6 1058 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms