RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 PRPF38AQ8NAV1 312 aaKnown RBP8.46□□□□□ -1.06
VPS39-204ENST00000561818 PAGE5Q96GU1 130 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 SGIP1Q9BQI5 828 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 MXD3Q9BW11 206 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 VAT1LQ9HCJ6 419 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 KCNQ5Q9NR82 932 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 PICK1Q9NRD5 415 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 KBTBD4Q9NVX7 518 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 TCEAL9Q9UHQ7 104 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 SERTAD1Q9UHV2 236 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 RWDD2AQ9UIY3 292 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 MTMR7Q9Y216 660 aa8.46□□□□□ -1.06
VPS39-204ENST00000561818 CTDP1Q9Y5B0 961 aaPredicted RBP8.46□□□□□ -1.06
VPS39-204ENST00000561818 SIPA1L1O43166 1804 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 hCG_1642624A0A1W2PR95 340 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 GOLGA6L9A6NEM1 432 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 UNCXA6NJT0 531 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 TMEM232C9JQI7 657 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 NFKBIEO00221 500 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 CYP3A4P08684 503 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 GHRHRQ02643 423 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 TKFCQ3LXA3 575 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 HYIQ5T013 277 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 SV2BQ7L1I2 683 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 NIPA1Q7RTP0 329 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 C4orf32Q8N8J7 132 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 PIBF1Q8WXW3 757 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 DHTKD1Q96HY7 919 aaPredicted RBP8.45□□□□□ -1.06
VPS39-204ENST00000561818 MBOAT7Q96N66 472 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 MTMR9Q96QG7 549 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 WDR18Q9BV38 432 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 ANO3Q9BYT9 981 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 WDR11Q9BZH6 1224 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 UBA5Q9GZZ9 404 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 RANBP17Q9H2T7 1088 aaKnown RBP8.45□□□□□ -1.06
VPS39-204ENST00000561818 EXOC1Q9NV70 894 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 KCND2Q9NZV8 630 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 LRWD1Q9UFC0 647 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 MAN1B1Q9UKM7 699 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 PCDHA12Q9UN75 941 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 SYNRGQ9UMZ2 1314 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 CNTNAP1P78357 1384 aa8.45□□□□□ -1.06
VPS39-204ENST00000561818 USP17L10C9JJH3 530 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 UBE2Q2LH0YL09 131 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 GCOM1H8Y6P7 765 aaPredicted RBP8.44□□□□□ -1.06
VPS39-204ENST00000561818 RAD21O60216 631 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 RHOBTB3O94955 611 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 GDF11O95390 407 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 RPN1P04843 607 aaKnown RBP8.44□□□□□ -1.06
VPS39-204ENST00000561818 ICAM1P05362 532 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 POLR2MP0CAP2 368 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 CDK11BP21127 795 aaKnown RBP8.44□□□□□ -1.06
VPS39-204ENST00000561818 SFPQP23246 707 aaKnown RBP eCLIP8.44□□□□□ -1.06
VPS39-204ENST00000561818 EEF1GP26641 437 aaKnown RBP8.44□□□□□ -1.06
VPS39-204ENST00000561818 ABCD1P33897 745 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 NF2P35240 595 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 COPB2P35606 906 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 CACNB3P54284 484 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 EVX2Q03828 476 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 PAK1Q13153 545 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 PNOCQ13519 176 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 HSP90AA2PQ14568 343 aaPredicted RBP8.44□□□□□ -1.06
VPS39-204ENST00000561818 RASA3Q14644 834 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 NOL9Q5SY16 702 aaKnown RBP8.44□□□□□ -1.06
VPS39-204ENST00000561818 TYW1BQ6NUM6 668 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 PDXDC2PQ6P474 469 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 C11orf57Q6ZUT1 292 aaPredicted RBP8.44□□□□□ -1.06
VPS39-204ENST00000561818 STXBP4Q6ZWJ1 553 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 KCTD1Q719H9 257 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 FCHSD1Q86WN1 690 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 MICALL2Q8IY33 904 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 PDILTQ8N807 584 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 CCDC51Q96ER9 411 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 C12orf42Q96LP6 360 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 C7orf25Q9BPX7 421 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 NAA15Q9BXJ9 866 aaKnown RBP8.44□□□□□ -1.06
VPS39-204ENST00000561818 MAGEC2Q9UBF1 373 aaPredicted RBP8.44□□□□□ -1.06
VPS39-204ENST00000561818 CNOT7Q9UIV1 285 aaKnown RBP8.44□□□□□ -1.06
VPS39-204ENST00000561818 PRR12Q9ULL5 1215 aa8.44□□□□□ -1.06
VPS39-204ENST00000561818 CLRN2A0PK11 232 aa8.43□□□□□ -1.06
VPS39-204ENST00000561818 B4DLN1 442 aa8.43□□□□□ -1.06
VPS39-204ENST00000561818 DKC1O60832 514 aaKnown RBP eCLIP8.43□□□□□ -1.06
VPS39-204ENST00000561818 DTNBO60941 627 aa8.43□□□□□ -1.06
VPS39-204ENST00000561818 ZBED4O75132 1171 aa8.43□□□□□ -1.06
VPS39-204ENST00000561818 STAM2O75886 525 aa8.43□□□□□ -1.06
VPS39-204ENST00000561818 BCRP11274 1271 aa8.43□□□□□ -1.06
VPS39-204ENST00000561818 SCP2P22307 547 aa8.43□□□□□ -1.06
VPS39-204ENST00000561818 GMPSP49915 693 aaPredicted RBP8.43□□□□□ -1.06
VPS39-204ENST00000561818 UBASH3AP57075 661 aa8.43□□□□□ -1.06
VPS39-204ENST00000561818 ARHGAP4P98171 946 aa8.43□□□□□ -1.06
VPS39-204ENST00000561818 LRRC63Q05C16 580 aa8.43□□□□□ -1.06
VPS39-204ENST00000561818 R3HDM1Q15032 1099 aaKnown RBP8.43□□□□□ -1.06
VPS39-204ENST00000561818 EARS2Q5JPH6 523 aaKnown RBP8.43□□□□□ -1.06
VPS39-204ENST00000561818 JAKMIP3Q5VZ66 844 aa8.43□□□□□ -1.06
VPS39-204ENST00000561818 ARHGAP27Q6ZUM4 889 aa8.43□□□□□ -1.06
VPS39-204ENST00000561818 SLC51AQ86UW1 340 aa8.43□□□□□ -1.06
VPS39-204ENST00000561818 ZFPM1Q8IX07 1006 aa8.43□□□□□ -1.06
VPS39-204ENST00000561818 SCYL3Q8IZE3 742 aa8.43□□□□□ -1.06
VPS39-204ENST00000561818 ZC3H15Q8WU90 426 aaKnown RBP8.43□□□□□ -1.06
VPS39-204ENST00000561818 LARP4BQ92615 738 aaKnown RBP8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms